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The map label for this gene is ntaR [H]

Identifier: 39546339

GI number: 39546339

Start: 2379538

End: 2380233

Strand: Direct

Name: ntaR [H]

Synonym: STM2275

Alternate gene names: 39546339

Gene position: 2379538-2380233 (Clockwise)

Preceding gene: 16765597

Following gene: 16765603

Centisome position: 48.99

GC content: 38.51

Gene sequence:

>696_bases
ATGAAAAATAGATTAAAGCGTGACTTTAGTCACATATCAATTGAAATACCCAAATCCATCACCCAGGTGATTAAAGAGAA
AATAAGGGAGATGATTATCCATGGCGATTTCGATCTTGGGCAAGCGATCAGTGAAAATGAACTATCAAATATTCTGATGG
TAAGTAAAACACCAATTCGTGAAGCTTTTATTTGGCTGAGCTATAATGAAAACTTAGTCAACATCATTCCCCGCAGTGGG
ACATTTGTTTTTTCTGTCACCGACGAGGATATCAATGATCTCATCAAAATGAGGGTTATCCTTGAACAGGGCGCAATTCG
TGAAGCGATGGAGAAAAATGCTAACAATGTCATAGTCGAATTAAGCAATATTTTATCGAAGTCAGCAAAAATTAATGCAG
AGCGAGATACGCAAGCTTACCTCAAACTGGATCATGATTTTCATTATGTTTTTGTGAAATATGCCGATAATAAATACATT
TCACAAGCACACCTGTTGATCTCAGCACGTTTATTGGCAATTCGCTACAGACTGGATTTTACCGCTGAATATATCACCAG
CTCTAACCGTGGACATGCCACTATTTTGGATATGTTAAAAAACAACAACGTCGAGGGCGTCTGTAATTTTATCACGCACC
ACATCGGTAGCGGTTTTACAGAACGCGCAAGAAAACTTCTTGCGCTGAAAGCGTAA

Upstream 100 bases:

>100_bases
AATAAAGTATGTAAATTTTCTTATATCTGATATATTAGATCCGTTAATTTTGAATAAATTAATTACAATGGAGCCGGGTT
TAACCATGGAGGAGAAGAAA

Downstream 100 bases:

>100_bases
TAAAGACGGCAGTAGATATAACGCAGCGACTTTGCACCTGCTATACTGCCCCGATAGATCAATAGCGGAATCTCATGTAC
TCATGAACACTGAAAAACCG

Product: regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 231

Protein sequence:

>231_residues
MKNRLKRDFSHISIEIPKSITQVIKEKIREMIIHGDFDLGQAISENELSNILMVSKTPIREAFIWLSYNENLVNIIPRSG
TFVFSVTDEDINDLIKMRVILEQGAIREAMEKNANNVIVELSNILSKSAKINAERDTQAYLKLDHDFHYVFVKYADNKYI
SQAHLLISARLLAIRYRLDFTAEYITSSNRGHATILDMLKNNNVEGVCNFITHHIGSGFTERARKLLALKA

Sequences:

>Translated_231_residues
MKNRLKRDFSHISIEIPKSITQVIKEKIREMIIHGDFDLGQAISENELSNILMVSKTPIREAFIWLSYNENLVNIIPRSG
TFVFSVTDEDINDLIKMRVILEQGAIREAMEKNANNVIVELSNILSKSAKINAERDTQAYLKLDHDFHYVFVKYADNKYI
SQAHLLISARLLAIRYRLDFTAEYITSSNRGHATILDMLKNNNVEGVCNFITHHIGSGFTERARKLLALKA
>Mature_231_residues
MKNRLKRDFSHISIEIPKSITQVIKEKIREMIIHGDFDLGQAISENELSNILMVSKTPIREAFIWLSYNENLVNIIPRSG
TFVFSVTDEDINDLIKMRVILEQGAIREAMEKNANNVIVELSNILSKSAKINAERDTQAYLKLDHDFHYVFVKYADNKYI
SQAHLLISARLLAIRYRLDFTAEYITSSNRGHATILDMLKNNNVEGVCNFITHHIGSGFTERARKLLALKA

Specific function: Probable regulator for the expression of the NTA monooxygenase subunits [H]

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 26480; Mature: 26480

Theoretical pI: Translated: 8.91; Mature: 8.91

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNRLKRDFSHISIEIPKSITQVIKEKIREMIIHGDFDLGQAISENELSNILMVSKTPIR
CCCHHHHHHHHEEEECCHHHHHHHHHHHHHHHHCCCCCHHHHCCHHHHHCEEEEECCCCC
EAFIWLSYNENLVNIIPRSGTFVFSVTDEDINDLIKMRVILEQGAIREAMEKNANNVIVE
CEEEEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
LSNILSKSAKINAERDTQAYLKLDHDFHYVFVKYADNKYISQAHLLISARLLAIRYRLDF
HHHHHHHHHCCCCCCCCEEEEEECCCEEEEEEEECCCCHHHHHHHHHHHHHHHHEEECCC
TAEYITSSNRGHATILDMLKNNNVEGVCNFITHHIGSGFTERARKLLALKA
HHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MKNRLKRDFSHISIEIPKSITQVIKEKIREMIIHGDFDLGQAISENELSNILMVSKTPIR
CCCHHHHHHHHEEEECCHHHHHHHHHHHHHHHHCCCCCHHHHCCHHHHHCEEEEECCCCC
EAFIWLSYNENLVNIIPRSGTFVFSVTDEDINDLIKMRVILEQGAIREAMEKNANNVIVE
CEEEEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
LSNILSKSAKINAERDTQAYLKLDHDFHYVFVKYADNKYISQAHLLISARLLAIRYRLDF
HHHHHHHHHCCCCCCCCEEEEEECCCEEEEEEEECCCCHHHHHHHHHHHHHHHHEEECCC
TAEYITSSNRGHATILDMLKNNNVEGVCNFITHHIGSGFTERARKLLALKA
HHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA