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The map label for this gene is yhgF [H]

Identifier: 308065953

GI number: 308065953

Start: 3661123

End: 3663453

Strand: Direct

Name: yhgF [H]

Synonym: NA

Alternate gene names: 308065953

Gene position: 3661123-3663453 (Clockwise)

Preceding gene: 16766791

Following gene: 16766793

Centisome position: 75.37

GC content: 58.6

Gene sequence:

>2331_bases
ATGATGAATGATTCTTTCTGCCGCATTATTGCGGGTGAAATCCAGGCAAATGCCGGACAGGTTGAAGCTGCCGTTCGCCT
GCTTGACGAAGGGAACACCGTGCCGTTTATCGCACGTTATCGTAAAGAAATCACCGGCGGTCTGGATGACACGCAGTTGC
GTAACCTGGAAACGCGTCTGGGCTATCTGCGTGAGCTGGAAGACAGGCGTCAGGCCATCCTCAAGTCCATTTCCGAACAA
GGCAAACTGACCGATGAGCTGGCTGGCGCCATCAACGCTACGTTAAGTAAGACCGAGCTCGAAGACCTCTACCTGCCCTA
TAAACCTAAACGCCGCACCCGTGGACAAATCGCCATTGAAGCCGGCCTTGAGCCGCTGGCCGATCTGCTCTGGAACGAGC
CGTCCCACGATCCTGACGTGGAAGCGGCAAAGTACATTGATGGCGACAAAGGCGTGGCGGACACGAAAGCCGCGCTCGAC
GGCGCACGCTACATTCTGATGGAGCGCTTTGCCGAAGACGCCGCATTGCTGGCGAAAGTACGTGATTACCTGTGGAAGAA
CGCCCATCTGGTCGCCACCGTCGTGAGCGGCAAAGAGGAAGAAGGGGCAAAATTCCGCGACTATTTCGACCATCATGAGC
CCATTGCTAACGTCCCGTCTCACCGTGCGCTGGCCATGTTCCGTGGTCGTAACGAAGGCATTCTGCAACTTTCGCTCAAT
GCCGACCCACAGTTTGATGAGCCGCCGAAAGAGAGCTACTGCGAGCAAATCATCATGGACCATCTCGGCCTGCGGCTAAA
TAACGCCCCGGCGGATAGCTGGCGCAAAGGCGTAGTGAGCTGGACGTGGCGTATCAAAGTCTTAATGCACCTCGAAACCG
AACTGATGGGCACCGTGCGCGAACGTGCGGAAGACGAAGCGATTAACGTGTTTGCGCGTAACCTGCACGACCTGCTGATG
GCAGCCCCCGCAGGCCTGCGCGCCACGATGGGCCTTGATCCTGGCCTGCGTACCGGCGTAAAAGTCGCTGTCGTTGACGG
CACCGGCAAGCTGGTGGCGACGGATACCATTTATCCGCATACCGGTCAGGCGGCCAAAGCGGCTACCGTGATCGCCGCGC
TGTGCGAAAAATACCACGTCGAACTGGTCGCGATTGGCAACGGTACGGCCTCGCGTGAAACCGAACGCTTCTATCTCGAC
GTACAAAAACAGTTCCCGAACGTGACGGCGCAGAAAGTGATCGTCAGCGAAGCGGGGGCGTCCGTGTATTCCGCTTCTGA
GCTGGCGGCGCAGGAGTTTCCGGATCTCGACGTCTCCCTGCGCGGCGCGGTCTCTATCGCGCGTCGTCTACAGGATCCGC
TGGCGGAACTGGTGAAAATCGATCCGAAATCCATCGGCGTCGGCCAATATCAACACGATGTCAGCCAGACCCAGTTGGCC
CGTAAACTGGATGCGGTGGTCGAAGACTGCGTAAACGCCGTCGGCGTCGATTTGAATACCGCCTCCGTGCCGCTGCTGAC
CCGCGTCGCGGGCTTAACGCGCATGATGGCGCAAAACATCGTCGCCTGGCGCGATGAGAACGGTCAGTTCCAGAACCGCC
AGCAACTGTTGAAGGTGAGCCGTCTGGGGCCGAAAGCGTTTGAGCAGTGCGCGGGCTTCCTGCGTATTAACCACGGCGAT
AACCCGCTGGATGCGTCCACCGTCCACCCGGAAGCCTATCCGGTTGTCGAACGCATTCTGGCGGCGACGCAGCAAGCGCT
AAAAGATCTGATGGGCAACAGCAACGAATTGCGCCACCTCAAGGCCGCTGATTTTACCGACGATAAATTCGGCGTGCCGA
CCGTGAGCGATATCATCAAAGAGCTGGAAAAACCGGGCCGCGACCCGCGTCCTGAATTTAAAACCGCGCAATTCGCCGAT
GGCGTTGAAACCATGAACGACCTGCTACCGGGGATGATTCTGGAAGGGGCGGTCACTAACGTCACCAATTTCGGCGCGTT
TGTCGATATCGGCGTTCATCAGGATGGCCTGGTCCACATCTCTTCCCTGTCGACTAAGTTCGTCGACGATCCACACACCG
TGGTAAAAGCTGGCGACATCGTGAAGGTGAAAGTGCTGGAAGTGGATCTGCAACGTAAGCGTATTGCGCTGACGATGCGT
CTGGACGAACAGCCCGGCGAAACCGCCGCTCGCCGCGGCGGCGGCGCCGATCGCGCTCAGGGCAACCGCCCGGCATCAAA
AGCGGCGAAACCGCGCGGTCGTGACGCCCAGCCAGCCGGTAACAGCGCCATGATGGACGCGCTGGCAGCCGCAATGGGAA
AAAAACGCTAA

Upstream 100 bases:
NA

Downstream 100 bases:
NA

Product: RNase R

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 776; Mature: 776

Protein sequence:
NA

Sequences:

>Translated_776_residues
MMNDSFCRIIAGEIQANAGQVEAAVRLLDEGNTVPFIARYRKEITGGLDDTQLRNLETRLGYLRELEDRRQAILKSISEQ
GKLTDELAGAINATLSKTELEDLYLPYKPKRRTRGQIAIEAGLEPLADLLWNEPSHDPDVEAAKYIDGDKGVADTKAALD
GARYILMERFAEDAALLAKVRDYLWKNAHLVATVVSGKEEEGAKFRDYFDHHEPIANVPSHRALAMFRGRNEGILQLSLN
ADPQFDEPPKESYCEQIIMDHLGLRLNNAPADSWRKGVVSWTWRIKVLMHLETELMGTVRERAEDEAINVFARNLHDLLM
AAPAGLRATMGLDPGLRTGVKVAVVDGTGKLVATDTIYPHTGQAAKAATVIAALCEKYHVELVAIGNGTASRETERFYLD
VQKQFPNVTAQKVIVSEAGASVYSASELAAQEFPDLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQTQLA
RKLDAVVEDCVNAVGVDLNTASVPLLTRVAGLTRMMAQNIVAWRDENGQFQNRQQLLKVSRLGPKAFEQCAGFLRINHGD
NPLDASTVHPEAYPVVERILAATQQALKDLMGNSNELRHLKAADFTDDKFGVPTVSDIIKELEKPGRDPRPEFKTAQFAD
GVETMNDLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSTKFVDDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR
LDEQPGETAARRGGGADRAQGNRPASKAAKPRGRDAQPAGNSAMMDALAAAMGKKR
>Mature_776_residues
MMNDSFCRIIAGEIQANAGQVEAAVRLLDEGNTVPFIARYRKEITGGLDDTQLRNLETRLGYLRELEDRRQAILKSISEQ
GKLTDELAGAINATLSKTELEDLYLPYKPKRRTRGQIAIEAGLEPLADLLWNEPSHDPDVEAAKYIDGDKGVADTKAALD
GARYILMERFAEDAALLAKVRDYLWKNAHLVATVVSGKEEEGAKFRDYFDHHEPIANVPSHRALAMFRGRNEGILQLSLN
ADPQFDEPPKESYCEQIIMDHLGLRLNNAPADSWRKGVVSWTWRIKVLMHLETELMGTVRERAEDEAINVFARNLHDLLM
AAPAGLRATMGLDPGLRTGVKVAVVDGTGKLVATDTIYPHTGQAAKAATVIAALCEKYHVELVAIGNGTASRETERFYLD
VQKQFPNVTAQKVIVSEAGASVYSASELAAQEFPDLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQTQLA
RKLDAVVEDCVNAVGVDLNTASVPLLTRVAGLTRMMAQNIVAWRDENGQFQNRQQLLKVSRLGPKAFEQCAGFLRINHGD
NPLDASTVHPEAYPVVERILAATQQALKDLMGNSNELRHLKAADFTDDKFGVPTVSDIIKELEKPGRDPRPEFKTAQFAD
GVETMNDLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSTKFVDDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR
LDEQPGETAARRGGGADRAQGNRPASKAAKPRGRDAQPAGNSAMMDALAAAMGKKR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI221136781, Length=776, Percent_Identity=34.7938144329897, Blast_Score=402, Evalue=1e-112,
Organism=Homo sapiens, GI27597090, Length=705, Percent_Identity=22.8368794326241, Blast_Score=96, Evalue=1e-19,
Organism=Escherichia coli, GI87082262, Length=776, Percent_Identity=94.0721649484536, Blast_Score=1462, Evalue=0.0,
Organism=Escherichia coli, GI1787140, Length=89, Percent_Identity=41.5730337078652, Blast_Score=69, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI17511129, Length=720, Percent_Identity=27.2222222222222, Blast_Score=218, Evalue=9e-57,
Organism=Caenorhabditis elegans, GI17552892, Length=294, Percent_Identity=28.2312925170068, Blast_Score=86, Evalue=8e-17,
Organism=Saccharomyces cerevisiae, GI6321552, Length=229, Percent_Identity=26.6375545851528, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI62484314, Length=770, Percent_Identity=31.1688311688312, Blast_Score=348, Evalue=6e-96,
Organism=Drosophila melanogaster, GI24640080, Length=448, Percent_Identity=23.4375, Blast_Score=93, Evalue=7e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR022967
- InterPro:   IPR018974
- InterPro:   IPR023097 [H]

Pfam domain/function: PF00575 S1; PF09371 Tex_N [H]

EC number: NA

Molecular weight: Translated: 84996; Mature: 84996

Theoretical pI: Translated: 6.00; Mature: 6.00

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMNDSFCRIIAGEIQANAGQVEAAVRLLDEGNTVPFIARYRKEITGGLDDTQLRNLETRL
CCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHH
GYLRELEDRRQAILKSISEQGKLTDELAGAINATLSKTELEDLYLPYKPKRRTRGQIAIE
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEE
AGLEPLADLLWNEPSHDPDVEAAKYIDGDKGVADTKAALDGARYILMERFAEDAALLAKV
CCCHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
RDYLWKNAHLVATVVSGKEEEGAKFRDYFDHHEPIANVPSHRALAMFRGRNEGILQLSLN
HHHHHCCCEEEEEEECCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCEEEEEEC
ADPQFDEPPKESYCEQIIMDHLGLRLNNAPADSWRKGVVSWTWRIKVLMHLETELMGTVR
CCCCCCCCCHHHHHHHHHHHHHCCEECCCCCHHHHCCCEEEEEEEEEHHHHHHHHHHHHH
ERAEDEAINVFARNLHDLLMAAPAGLRATMGLDPGLRTGVKVAVVDGTGKLVATDTIYPH
HHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCEEEEEECCCCEEEECCCCCC
TGQAAKAATVIAALCEKYHVELVAIGNGTASRETERFYLDVQKQFPNVTAQKVIVSEAGA
CCCHHHHHHHHHHHHHHHCEEEEEECCCCCCCCCHHHEEEHHHHCCCCHHHHHHHHHCCC
SVYSASELAAQEFPDLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQTQLA
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
RKLDAVVEDCVNAVGVDLNTASVPLLTRVAGLTRMMAQNIVAWRDENGQFQNRQQLLKVS
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHH
RLGPKAFEQCAGFLRINHGDNPLDASTVHPEAYPVVERILAATQQALKDLMGNSNELRHL
HCCHHHHHHHHCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHCEE
KAADFTDDKFGVPTVSDIIKELEKPGRDPRPEFKTAQFADGVETMNDLLPGMILEGAVTN
ECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHH
VTNFGAFVDIGVHQDGLVHISSLSTKFVDDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR
HHHCCCEEEECCCCCCCEEEECCCHHCCCCCHHHEECCCEEEEEEEEEECCCCEEEEEEE
LDEQPGETAARRGGGADRAQGNRPASKAAKPRGRDAQPAGNSAMMDALAAAMGKKR
ECCCCCHHHHHCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
>Mature Secondary Structure
MMNDSFCRIIAGEIQANAGQVEAAVRLLDEGNTVPFIARYRKEITGGLDDTQLRNLETRL
CCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHH
GYLRELEDRRQAILKSISEQGKLTDELAGAINATLSKTELEDLYLPYKPKRRTRGQIAIE
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEE
AGLEPLADLLWNEPSHDPDVEAAKYIDGDKGVADTKAALDGARYILMERFAEDAALLAKV
CCCHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
RDYLWKNAHLVATVVSGKEEEGAKFRDYFDHHEPIANVPSHRALAMFRGRNEGILQLSLN
HHHHHCCCEEEEEEECCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCEEEEEEC
ADPQFDEPPKESYCEQIIMDHLGLRLNNAPADSWRKGVVSWTWRIKVLMHLETELMGTVR
CCCCCCCCCHHHHHHHHHHHHHCCEECCCCCHHHHCCCEEEEEEEEEHHHHHHHHHHHHH
ERAEDEAINVFARNLHDLLMAAPAGLRATMGLDPGLRTGVKVAVVDGTGKLVATDTIYPH
HHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCEEEEEECCCCEEEECCCCCC
TGQAAKAATVIAALCEKYHVELVAIGNGTASRETERFYLDVQKQFPNVTAQKVIVSEAGA
CCCHHHHHHHHHHHHHHHCEEEEEECCCCCCCCCHHHEEEHHHHCCCCHHHHHHHHHCCC
SVYSASELAAQEFPDLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQTQLA
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
RKLDAVVEDCVNAVGVDLNTASVPLLTRVAGLTRMMAQNIVAWRDENGQFQNRQQLLKVS
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHH
RLGPKAFEQCAGFLRINHGDNPLDASTVHPEAYPVVERILAATQQALKDLMGNSNELRHL
HCCHHHHHHHHCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHCEE
KAADFTDDKFGVPTVSDIIKELEKPGRDPRPEFKTAQFADGVETMNDLLPGMILEGAVTN
ECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHH
VTNFGAFVDIGVHQDGLVHISSLSTKFVDDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR
HHHCCCEEEECCCCCCCEEEECCCHHCCCCCHHHEECCCEEEEEEEEEECCCCEEEEEEE
LDEQPGETAARRGGGADRAQGNRPASKAAKPRGRDAQPAGNSAMMDALAAAMGKKR
ECCCCCHHHHHCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503; 10493123 [H]