| Definition | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 chromosome, complete genome. |
|---|---|
| Accession | NC_003197 |
| Length | 4,857,432 |
Click here to switch to the map view.
The map label for this gene is stjB [H]
Identifier: 16767813
GI number: 16767813
Start: 4826467
End: 4828875
Strand: Reverse
Name: stjB [H]
Synonym: STM4572
Alternate gene names: 16767813
Gene position: 4828875-4826467 (Counterclockwise)
Preceding gene: 16767814
Following gene: 16767812
Centisome position: 99.41
GC content: 49.36
Gene sequence:
>2409_bases GTGAAGTATTTAAAACTGCCGCTATACATCAAAACTGCGCTTTATTGCTCACTGGCAACCACGACGTTTTCAGCTCTGGC GGAGGAGCTGAATTTTGACATGGGTATTCTCACCTCCAGAGGCATTAGCCCCAACGTCGCACAATATTTTTCCCGCGCGC CGCGCTTTCTACCAGGCAGCCACACCGTCATGGTAAAGATCAATGGCGTAAATAGAGGGTCGTTGGTCGCGCGTTTCGAC ACAGAAGGCCAGCTTTGCGTGGATGACGATTTCCTCAGCGCCAGCGGGCTCGTTTCGCTTAATATCAGCGCCAAAGAAAC CTGCCATAGCCTACAAGAAGATTATCCCTCAGCGATTATTACCCCACTGCCAAACAGTGAATCGCTGGAGCTTTTTGTTC CGGCACAGGCTCTGGATAATAACTTACTATCGCTAAACAACGTGATTAAAGGCGGCACCGCCGGGTTATTTAACTATAAC CTGTACGCCAGTCGCAGCGAGTCATCCGGTAGCGATAGCCGAAACTATGCCCAGGCAAACCTTGAAGCTGGCTTAAACTT CGCGGAATGGACGCTGCGCAGCCGCTACATGCTGACGAATAATGATGGAGAATACCGTACCGATAGTCTATATACCTATG CGGAGCACGTATTTCAGGCACAAAAAATGCGTGCGCAAGTTGGGCAGATCAACGTCAACTCCAGTCTATTCAGTGGCGCG CCGATCAACGGCGTACAGCTTATCCCTGAACAAGGGCTGGCACAGGATACACAAGGCGTAACCATTAACGGTATTGCCCG AACCCACCAGGCTCGCGTTGAAGTTCGTCAGTCCGGACAGATTATTTATACCGCACCAGTGAACGCTGGGGCATTTACCC TTGAAAATGTCCCCATCATACGCAGCAATACCGACCTTAACGTCAGCGTCGTTGAAACCGATGGCTCAACGACAACCTTC ACGGTGCCGGCAGTATCCTTTAATTTACGCGAACTCACGCCCGCAGGCTTAACAATGTCCATAGGGCGCATACGTGATAC CACCAGCGACTATTCGCTCCCCTGGATCTATAACATCAGCGATGGTTGGAAACTGAGTGAAAACTGGCTGGCGCAGGCGT CTGGCGTACTGGCACAAGACTATCAAGCGGCAGGAGGGATGCTGCAATGGCTTCCAACCAATAAATGGACGTTTTCCGGC TCAATGCTGGGCAGTAAAGCGTCCTTTGGCGAATCTCTGCAGGGTGCGAAAAGTGAACTACGCGCCAGCATGGCGCTGCC CGGGGAAATTAGACTTGACGTCAGTACCGCCCGCTACAGCGACGGATATCGTGAGTTAACGGATGCGCTCAATAAAGATG CTTACGAATATCAAAGTAGCTCCAGTGCTAATATTGCCTGGAACCATAATCTGTTAGGTACCTTCTCTCTGGGTTATTAC ACTTATCAGGCTACGGATAATGACAACGACTCTCGCAGTATAATGGCTTCCTGGGGCAAAACGTTTAAATATGCCTCAAT TACCGCTAACTGGCAGCACGCTGTTAATCAGGATGATGAGAATCATAACGACAGTAATGATGATGATATGTTTTACATCA ACATCAGCATTCCACTAGGTGAGCAGCGCGTCGGCGCTTATATGCGTAATCAAGGTGATAAAACAACCTACGGGCTACAA AATAATGGTTCGCTGAGTAAAGATACCCATTACTATATTTCTGCGGATCGTGATGCAAAAAACCAGCAAAATAGCTTCAA CGGTAATCTCAATAGCAATCTTCATTACACTCAACTCAGCGTGGGCGGCGGCACTGATGGCGATAATTACCGCAACTATA ACGCAACCTTCAGCGGAGGCATCGCTGCACACGAACATGGCATAACGTTCTCGCCTTATACAATCAAAAATACCTTTGCT ATCGCACGCCTGAGTGAACCAGAAAGCGGCATTGAAATCGCCACGCCACAGGGGCGAATCTGGACTGACCACTGGGGGCA AGCCGTCATTCCGGGGCTAACTGAATGGCGGAAATCCCGCGTAGAGGTTAATGCGAATACGCTACCAAAGAGTATGGAAC TGGCAAACGGTATTAAGAATATTACCGTCGCGCACAGCGCTTTTCGGGTACTGGATTTCAACGTGCTGAATACACGCCGT GTGATGCTGGCAGTAAAGCGTCCGGATGGCTCATGGCTACCTAAAGGCACCAGCATTGTAGATGAAAAAAATAACTATTT GGTCAGCGCTGTCGACAGCGGACGCGTATTTATCACCGATGTTGGGGATAATCCTGCGTTATATGCCGCTGATGATGATA TGAATCGTCTGTGTCGCATCCACTACACGCTGCAGAAAACCCAGGATAAAGAGGCATTTTATGAAACGGCAAAGGGAGTC TGTCAATGA
Upstream 100 bases:
>100_bases TTTGCTGCTGATACATCCGTACGTTTTTATCCTGCCAGCCGTTACGGCATTGAAGTCCCCAGCTTTACCTCACCGCTGGT GCCGTAATGAGAGCTAGCAC
Downstream 100 bases:
>100_bases AATCCAACAGCAAATGGTTGGGGATTGCTATATGTTGTATCTTCACCGCACTACTCCCCCCATCAGCCCGGGCCGACGAT GACTGCCAAATAACGTTTTC
Product: fimbrial usher protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 802; Mature: 802
Protein sequence:
>802_residues MKYLKLPLYIKTALYCSLATTTFSALAEELNFDMGILTSRGISPNVAQYFSRAPRFLPGSHTVMVKINGVNRGSLVARFD TEGQLCVDDDFLSASGLVSLNISAKETCHSLQEDYPSAIITPLPNSESLELFVPAQALDNNLLSLNNVIKGGTAGLFNYN LYASRSESSGSDSRNYAQANLEAGLNFAEWTLRSRYMLTNNDGEYRTDSLYTYAEHVFQAQKMRAQVGQINVNSSLFSGA PINGVQLIPEQGLAQDTQGVTINGIARTHQARVEVRQSGQIIYTAPVNAGAFTLENVPIIRSNTDLNVSVVETDGSTTTF TVPAVSFNLRELTPAGLTMSIGRIRDTTSDYSLPWIYNISDGWKLSENWLAQASGVLAQDYQAAGGMLQWLPTNKWTFSG SMLGSKASFGESLQGAKSELRASMALPGEIRLDVSTARYSDGYRELTDALNKDAYEYQSSSSANIAWNHNLLGTFSLGYY TYQATDNDNDSRSIMASWGKTFKYASITANWQHAVNQDDENHNDSNDDDMFYINISIPLGEQRVGAYMRNQGDKTTYGLQ NNGSLSKDTHYYISADRDAKNQQNSFNGNLNSNLHYTQLSVGGGTDGDNYRNYNATFSGGIAAHEHGITFSPYTIKNTFA IARLSEPESGIEIATPQGRIWTDHWGQAVIPGLTEWRKSRVEVNANTLPKSMELANGIKNITVAHSAFRVLDFNVLNTRR VMLAVKRPDGSWLPKGTSIVDEKNNYLVSAVDSGRVFITDVGDNPALYAADDDMNRLCRIHYTLQKTQDKEAFYETAKGV CQ
Sequences:
>Translated_802_residues MKYLKLPLYIKTALYCSLATTTFSALAEELNFDMGILTSRGISPNVAQYFSRAPRFLPGSHTVMVKINGVNRGSLVARFD TEGQLCVDDDFLSASGLVSLNISAKETCHSLQEDYPSAIITPLPNSESLELFVPAQALDNNLLSLNNVIKGGTAGLFNYN LYASRSESSGSDSRNYAQANLEAGLNFAEWTLRSRYMLTNNDGEYRTDSLYTYAEHVFQAQKMRAQVGQINVNSSLFSGA PINGVQLIPEQGLAQDTQGVTINGIARTHQARVEVRQSGQIIYTAPVNAGAFTLENVPIIRSNTDLNVSVVETDGSTTTF TVPAVSFNLRELTPAGLTMSIGRIRDTTSDYSLPWIYNISDGWKLSENWLAQASGVLAQDYQAAGGMLQWLPTNKWTFSG SMLGSKASFGESLQGAKSELRASMALPGEIRLDVSTARYSDGYRELTDALNKDAYEYQSSSSANIAWNHNLLGTFSLGYY TYQATDNDNDSRSIMASWGKTFKYASITANWQHAVNQDDENHNDSNDDDMFYINISIPLGEQRVGAYMRNQGDKTTYGLQ NNGSLSKDTHYYISADRDAKNQQNSFNGNLNSNLHYTQLSVGGGTDGDNYRNYNATFSGGIAAHEHGITFSPYTIKNTFA IARLSEPESGIEIATPQGRIWTDHWGQAVIPGLTEWRKSRVEVNANTLPKSMELANGIKNITVAHSAFRVLDFNVLNTRR VMLAVKRPDGSWLPKGTSIVDEKNNYLVSAVDSGRVFITDVGDNPALYAADDDMNRLCRIHYTLQKTQDKEAFYETAKGV CQ >Mature_802_residues MKYLKLPLYIKTALYCSLATTTFSALAEELNFDMGILTSRGISPNVAQYFSRAPRFLPGSHTVMVKINGVNRGSLVARFD TEGQLCVDDDFLSASGLVSLNISAKETCHSLQEDYPSAIITPLPNSESLELFVPAQALDNNLLSLNNVIKGGTAGLFNYN LYASRSESSGSDSRNYAQANLEAGLNFAEWTLRSRYMLTNNDGEYRTDSLYTYAEHVFQAQKMRAQVGQINVNSSLFSGA PINGVQLIPEQGLAQDTQGVTINGIARTHQARVEVRQSGQIIYTAPVNAGAFTLENVPIIRSNTDLNVSVVETDGSTTTF TVPAVSFNLRELTPAGLTMSIGRIRDTTSDYSLPWIYNISDGWKLSENWLAQASGVLAQDYQAAGGMLQWLPTNKWTFSG SMLGSKASFGESLQGAKSELRASMALPGEIRLDVSTARYSDGYRELTDALNKDAYEYQSSSSANIAWNHNLLGTFSLGYY TYQATDNDNDSRSIMASWGKTFKYASITANWQHAVNQDDENHNDSNDDDMFYINISIPLGEQRVGAYMRNQGDKTTYGLQ NNGSLSKDTHYYISADRDAKNQQNSFNGNLNSNLHYTQLSVGGGTDGDNYRNYNATFSGGIAAHEHGITFSPYTIKNTFA IARLSEPESGIEIATPQGRIWTDHWGQAVIPGLTEWRKSRVEVNANTLPKSMELANGIKNITVAHSAFRVLDFNVLNTRR VMLAVKRPDGSWLPKGTSIVDEKNNYLVSAVDSGRVFITDVGDNPALYAADDDMNRLCRIHYTLQKTQDKEAFYETAKGV CQ
Specific function: Involved in the export and assembly of a fimbrial subunit across the outer membrane [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the fimbrial export usher family [H]
Homologues:
Organism=Escherichia coli, GI1789610, Length=777, Percent_Identity=40.02574002574, Blast_Score=584, Evalue=1e-168, Organism=Escherichia coli, GI1789533, Length=813, Percent_Identity=26.5682656826568, Blast_Score=154, Evalue=2e-38, Organism=Escherichia coli, GI1786744, Length=815, Percent_Identity=24.6625766871166, Blast_Score=120, Evalue=3e-28, Organism=Escherichia coli, GI1786332, Length=887, Percent_Identity=22.7733934611048, Blast_Score=107, Evalue=3e-24, Organism=Escherichia coli, GI1788427, Length=842, Percent_Identity=23.396674584323, Blast_Score=100, Evalue=6e-22, Organism=Escherichia coli, GI1787172, Length=837, Percent_Identity=21.6248506571087, Blast_Score=95, Evalue=2e-20, Organism=Escherichia coli, GI1790772, Length=304, Percent_Identity=26.3157894736842, Blast_Score=85, Evalue=2e-17, Organism=Escherichia coli, GI87081778, Length=185, Percent_Identity=32.4324324324324, Blast_Score=68, Evalue=2e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000015 - InterPro: IPR018030 [H]
Pfam domain/function: PF00577 Usher [H]
EC number: NA
Molecular weight: Translated: 88363; Mature: 88363
Theoretical pI: Translated: 5.31; Mature: 5.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKYLKLPLYIKTALYCSLATTTFSALAEELNFDMGILTSRGISPNVAQYFSRAPRFLPGS CCEEEECCEEEHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHCCCCCCCC HTVMVKINGVNRGSLVARFDTEGQLCVDDDFLSASGLVSLNISAKETCHSLQEDYPSAII CEEEEEEECCCCCCEEEEECCCCCEEECCCCCCCCCEEEEECCHHHHHHHHHHHCCCEEE TPLPNSESLELFVPAQALDNNLLSLNNVIKGGTAGLFNYNLYASRSESSGSDSRNYAQAN ECCCCCCCEEEEEEHHHHCCCCEEHHHHHCCCCCEEEEEEEEEECCCCCCCCCCHHEEEH LEAGLNFAEWTLRSRYMLTNNDGEYRTDSLYTYAEHVFQAQKMRAQVGQINVNSSLFSGA HHHCCCHHHHHEECEEEEECCCCCEECCHHHHHHHHHHHHHHHHHHHCEEEECCCCCCCC PINGVQLIPEQGLAQDTQGVTINGIARTHQARVEVRQSGQIIYTAPVNAGAFTLENVPII CCCCEEECCCCCCCCCCCCEEEEEEHHHHHHHHHHCCCCCEEEEECCCCCEEEECCCEEE RSNTDLNVSVVETDGSTTTFTVPAVSFNLRELTPAGLTMSIGRIRDTTSDYSLPWIYNIS ECCCCEEEEEEEECCCEEEEEEEEEEEEHHHCCCCCCEEEECCEECCCCCCCCCEEEECC DGWKLSENWLAQASGVLAQDYQAAGGMLQWLPTNKWTFSGSMLGSKASFGESLQGAKSEL CCCEECHHHHHHHCCCHHHHHHHCCCEEEEECCCCEEECCCCCCCCCCCCHHHHHHHHHH RASMALPGEIRLDVSTARYSDGYRELTDALNKDAYEYQSSSSANIAWNHNLLGTFSLGYY HHHHCCCCEEEEEEEHHHCCCCHHHHHHHHCCCHHHHCCCCCCEEEECCCEEEEEEEEEE TYQATDNDNDSRSIMASWGKTFKYASITANWQHAVNQDDENHNDSNDDDMFYINISIPLG EEEECCCCCCCHHHHHHCCCCEEEEEEEECHHHHCCCCCCCCCCCCCCCEEEEEEEECCC EQRVGAYMRNQGDKTTYGLQNNGSLSKDTHYYISADRDAKNQQNSFNGNLNSNLHYTQLS HHHHHHHHHCCCCCEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEE VGGGTDGDNYRNYNATFSGGIAAHEHGITFSPYTIKNTFAIARLSEPESGIEIATPQGRI ECCCCCCCCCCCCCCEECCCEEEECCCCEECCEEECCEEEEEEECCCCCCCEEECCCCCE WTDHWGQAVIPGLTEWRKSRVEVNANTLPKSMELANGIKNITVAHSAFRVLDFNVLNTRR ECCCCCCCCCCCHHHHHHCEEEECCCCCCCHHHHHCCCCCEEEHHHEEEEEEEEEECCEE VMLAVKRPDGSWLPKGTSIVDEKNNYLVSAVDSGRVFITDVGDNPALYAADDDMNRLCRI EEEEEECCCCCCCCCCCEEEECCCCEEEEEECCCEEEEEECCCCCEEEECCCCCCCEEEE HYTLQKTQDKEAFYETAKGVCQ EEEECCCCCHHHHHHHHHHCCC >Mature Secondary Structure MKYLKLPLYIKTALYCSLATTTFSALAEELNFDMGILTSRGISPNVAQYFSRAPRFLPGS CCEEEECCEEEHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHCCCCCCCC HTVMVKINGVNRGSLVARFDTEGQLCVDDDFLSASGLVSLNISAKETCHSLQEDYPSAII CEEEEEEECCCCCCEEEEECCCCCEEECCCCCCCCCEEEEECCHHHHHHHHHHHCCCEEE TPLPNSESLELFVPAQALDNNLLSLNNVIKGGTAGLFNYNLYASRSESSGSDSRNYAQAN ECCCCCCCEEEEEEHHHHCCCCEEHHHHHCCCCCEEEEEEEEEECCCCCCCCCCHHEEEH LEAGLNFAEWTLRSRYMLTNNDGEYRTDSLYTYAEHVFQAQKMRAQVGQINVNSSLFSGA HHHCCCHHHHHEECEEEEECCCCCEECCHHHHHHHHHHHHHHHHHHHCEEEECCCCCCCC PINGVQLIPEQGLAQDTQGVTINGIARTHQARVEVRQSGQIIYTAPVNAGAFTLENVPII CCCCEEECCCCCCCCCCCCEEEEEEHHHHHHHHHHCCCCCEEEEECCCCCEEEECCCEEE RSNTDLNVSVVETDGSTTTFTVPAVSFNLRELTPAGLTMSIGRIRDTTSDYSLPWIYNIS ECCCCEEEEEEEECCCEEEEEEEEEEEEHHHCCCCCCEEEECCEECCCCCCCCCEEEECC DGWKLSENWLAQASGVLAQDYQAAGGMLQWLPTNKWTFSGSMLGSKASFGESLQGAKSEL CCCEECHHHHHHHCCCHHHHHHHCCCEEEEECCCCEEECCCCCCCCCCCCHHHHHHHHHH RASMALPGEIRLDVSTARYSDGYRELTDALNKDAYEYQSSSSANIAWNHNLLGTFSLGYY HHHHCCCCEEEEEEEHHHCCCCHHHHHHHHCCCHHHHCCCCCCEEEECCCEEEEEEEEEE TYQATDNDNDSRSIMASWGKTFKYASITANWQHAVNQDDENHNDSNDDDMFYINISIPLG EEEECCCCCCCHHHHHHCCCCEEEEEEEECHHHHCCCCCCCCCCCCCCCEEEEEEEECCC EQRVGAYMRNQGDKTTYGLQNNGSLSKDTHYYISADRDAKNQQNSFNGNLNSNLHYTQLS HHHHHHHHHCCCCCEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEE VGGGTDGDNYRNYNATFSGGIAAHEHGITFSPYTIKNTFAIARLSEPESGIEIATPQGRI ECCCCCCCCCCCCCCEECCCEEEECCCCEECCEEECCEEEEEEECCCCCCCEEECCCCCE WTDHWGQAVIPGLTEWRKSRVEVNANTLPKSMELANGIKNITVAHSAFRVLDFNVLNTRR ECCCCCCCCCCCHHHHHHCEEEECCCCCCCHHHHHCCCCCEEEHHHEEEEEEEEEECCEE VMLAVKRPDGSWLPKGTSIVDEKNNYLVSAVDSGRVFITDVGDNPALYAADDDMNRLCRI EEEEEECCCCCCCCCCCEEEECCCCEEEEEECCCEEEEEECCCCCEEEECCCCCCCEEEE HYTLQKTQDKEAFYETAKGVCQ EEEECCCCCHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]