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The map label for this gene is adiY [H]

Identifier: 16767545

GI number: 16767545

Start: 4537638

End: 4538399

Strand: Reverse

Name: adiY [H]

Synonym: STM4295

Alternate gene names: 16767545

Gene position: 4538399-4537638 (Counterclockwise)

Preceding gene: 16767546

Following gene: 16767544

Centisome position: 93.43

GC content: 43.44

Gene sequence:

>762_bases
ATGAGGATTTGCAGCAACGAACCTTGCATAGTGTTATTAACCGAAAAAGATACATGGTTACGAGTAAATGGTAAGGAGCC
AATCAGCTTAAAAGCGAATCATATGGCCATTCTGGCTTGTGAAAATAACGTTATTGACATTTCATCATTAAATAGCGTGC
TAGTAATACAAGTGAGTCGCAATAATATTAAAGACTATTTACAATTCCTGAATAAAGATCTCTCACACCTTCCCGTCTGG
CAACGCAACGCCGATCCCTTATTGACCGCCAACTGTCTGACGCCGGATATCTTCAGGGTCGCCGCCCGCTACAGCGCGAT
GGAAGCACCGGATGAAATTGTTAGTGAACGTACCCGTGCGCTCCTTTTCACCGTTTTATCCCGCTTTCTTGACCACAAAA
AATTTATTTCTTTGTTAATGCACATGCTGCGCAGCCGCATCAGTGACAGCGTTTACCACATCATTCAGAGCGATATTCAT
AAAGACTGGAATCTGAGCGCCGTTGCCAGTTGCCTGTGCCTGAGTCCAAGCTTGTTAAAGAAAAAGCTCAAAAACGAGAA
TACCAGTTATAGCCAAATAATCACGACCTGCCGAATGCGTTATGCCGTAAACCAATTATTAATGGACGGAAAGAATATCT
CTCAAGTCTCACAGCTGTGTGGGTATAACAGCACATCGTACTTTATTTCCGTGTTTAAAGAGTTTTATGGTATGACCCCC
CTGCATTATGTTAGCCAACATCGGGAACGATCGGCTGCCTAA

Upstream 100 bases:

>100_bases
TTAGTGCAGTTTCAATTCATCACACAATTGACTCAGTCCCCGTTATCTCTCCCGTTTGGCGAGATCCGGTCTTTTATGTT
CATATTCCAGGAGTTCGGGT

Downstream 100 bases:

>100_bases
TTTTTCTACACTCAACGATAAGACACGATAATAGCAGCATTGGCGATAACCCGTCTCCGACATAATTCAGCGGCATTCTG
AGGGGGTATGATACGACGTA

Product: transcriptional activator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 253

Protein sequence:

>253_residues
MRICSNEPCIVLLTEKDTWLRVNGKEPISLKANHMAILACENNVIDISSLNSVLVIQVSRNNIKDYLQFLNKDLSHLPVW
QRNADPLLTANCLTPDIFRVAARYSAMEAPDEIVSERTRALLFTVLSRFLDHKKFISLLMHMLRSRISDSVYHIIQSDIH
KDWNLSAVASCLCLSPSLLKKKLKNENTSYSQIITTCRMRYAVNQLLMDGKNISQVSQLCGYNSTSYFISVFKEFYGMTP
LHYVSQHRERSAA

Sequences:

>Translated_253_residues
MRICSNEPCIVLLTEKDTWLRVNGKEPISLKANHMAILACENNVIDISSLNSVLVIQVSRNNIKDYLQFLNKDLSHLPVW
QRNADPLLTANCLTPDIFRVAARYSAMEAPDEIVSERTRALLFTVLSRFLDHKKFISLLMHMLRSRISDSVYHIIQSDIH
KDWNLSAVASCLCLSPSLLKKKLKNENTSYSQIITTCRMRYAVNQLLMDGKNISQVSQLCGYNSTSYFISVFKEFYGMTP
LHYVSQHRERSAA
>Mature_253_residues
MRICSNEPCIVLLTEKDTWLRVNGKEPISLKANHMAILACENNVIDISSLNSVLVIQVSRNNIKDYLQFLNKDLSHLPVW
QRNADPLLTANCLTPDIFRVAARYSAMEAPDEIVSERTRALLFTVLSRFLDHKKFISLLMHMLRSRISDSVYHIIQSDIH
KDWNLSAVASCLCLSPSLLKKKLKNENTSYSQIITTCRMRYAVNQLLMDGKNISQVSQLCGYNSTSYFISVFKEFYGMTP
LHYVSQHRERSAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790557, Length=253, Percent_Identity=79.8418972332016, Blast_Score=429, Evalue=1e-122,
Organism=Escherichia coli, GI1786778, Length=250, Percent_Identity=58.4, Blast_Score=281, Evalue=3e-77,
Organism=Escherichia coli, GI1789933, Length=232, Percent_Identity=35.7758620689655, Blast_Score=130, Evalue=6e-32,
Organism=Escherichia coli, GI1787776, Length=196, Percent_Identity=35.7142857142857, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1786776, Length=96, Percent_Identity=43.75, Blast_Score=93, Evalue=1e-20,
Organism=Escherichia coli, GI1789932, Length=127, Percent_Identity=40.1574803149606, Blast_Score=89, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 28963; Mature: 28963

Theoretical pI: Translated: 8.89; Mature: 8.89

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRICSNEPCIVLLTEKDTWLRVNGKEPISLKANHMAILACENNVIDISSLNSVLVIQVSR
CCCCCCCCEEEEEECCCCEEEECCCCCCEEECCCEEEEEECCCEEECCCCCCEEEEEECC
NNIKDYLQFLNKDLSHLPVWQRNADPLLTANCLTPDIFRVAARYSAMEAPDEIVSERTRA
CCHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHCCHHHHHHHHHHH
LLFTVLSRFLDHKKFISLLMHMLRSRISDSVYHIIQSDIHKDWNLSAVASCLCLSPSLLK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHH
KKLKNENTSYSQIITTCRMRYAVNQLLMDGKNISQVSQLCGYNSTSYFISVFKEFYGMTP
HHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCH
LHYVSQHRERSAA
HHHHHHHHHHCCC
>Mature Secondary Structure
MRICSNEPCIVLLTEKDTWLRVNGKEPISLKANHMAILACENNVIDISSLNSVLVIQVSR
CCCCCCCCEEEEEECCCCEEEECCCCCCEEECCCEEEEEECCCEEECCCCCCEEEEEECC
NNIKDYLQFLNKDLSHLPVWQRNADPLLTANCLTPDIFRVAARYSAMEAPDEIVSERTRA
CCHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHCCHHHHHHHHHHH
LLFTVLSRFLDHKKFISLLMHMLRSRISDSVYHIIQSDIHKDWNLSAVASCLCLSPSLLK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHH
KKLKNENTSYSQIITTCRMRYAVNQLLMDGKNISQVSQLCGYNSTSYFISVFKEFYGMTP
HHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCH
LHYVSQHRERSAA
HHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]