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The map label for this gene is yjcO [H]

Identifier: 16767534

GI number: 16767534

Start: 4524484

End: 4525173

Strand: Reverse

Name: yjcO [H]

Synonym: STM4284

Alternate gene names: 16767534

Gene position: 4525173-4524484 (Counterclockwise)

Preceding gene: 16767535

Following gene: 16767525

Centisome position: 93.16

GC content: 52.75

Gene sequence:

>690_bases
ATGAAACTACTTCTTGCATTGATGTTGTTTATGACATTCTTTGCCCATGCCGCAGATCCTGAGCCGGGTAGCCAGTATTT
GCAGGCAGCAGAGGCAGGTGACAGACGCGCACAATATTTTCTGGCCGACAGTTGGTTGAGCTATGGCGATTTGAACAAAG
CTGAATACTGGGCGCAAAAAGCCGCCGACAGTGGCGACGCCGACGCCTGCGCGCTACTGGCGCAAATCAAAATCACTAAT
CCGGTAAGCCTGGATTATCCCGACGCGAAAAAGCTGGCTGAAAAGGCGGCTAACGCGGGCAGTAAAGCGGGAGAAATTAC
GCTGGCGCGGATCCTGGTCAACACCCAGGCCGGGCGCCCGGACTACCCAAAAGCCATCTCGCTGCTGCAAAAGGCCTCTG
AAGATCTGGATAACGACTCCGCGGTGGATGCGCAAATGTTGCTTGGCCTGATTTACGCCAACGGCGTGGGCATTGCCGCC
GATGATGAAAAAGCCGCCTGGTATTTCAAACGCAGTTCCGCCATTTCCCGTACCGGCTATTCAGAATACTGGGCGGGAAT
GATGTTTTTAAACGGTGAACCGGGCTTTATTGAAAAGAATAAGCAGAAGGCGTTGCACTGGTTGAATCTAAGCTGTCTGG
AAGGGTTTGATACCGGTTGCGAAGAGTTCGAAACGCTAACGAATGGCTGA

Upstream 100 bases:

>100_bases
CATCAGGCATTTTCCCTATAACAGCCTCCGCCCGGAGGCTGTTTTTTTATCCATACGATCTCTTTATACTGTCTTTTCCG
TACCCTAAATAAAACTCAAA

Downstream 100 bases:

>100_bases
TGTTTATTGCCTGATGAACGTAGTCGTTGTAGGCCTGATAAGCGTAGCGCCATCAGGCAACCCGGAGTAGGTTGCCGGGT
GGCAGCGTGAACGCCTTATC

Product: TPR repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 229

Protein sequence:

>229_residues
MKLLLALMLFMTFFAHAADPEPGSQYLQAAEAGDRRAQYFLADSWLSYGDLNKAEYWAQKAADSGDADACALLAQIKITN
PVSLDYPDAKKLAEKAANAGSKAGEITLARILVNTQAGRPDYPKAISLLQKASEDLDNDSAVDAQMLLGLIYANGVGIAA
DDEKAAWYFKRSSAISRTGYSEYWAGMMFLNGEPGFIEKNKQKALHWLNLSCLEGFDTGCEEFETLTNG

Sequences:

>Translated_229_residues
MKLLLALMLFMTFFAHAADPEPGSQYLQAAEAGDRRAQYFLADSWLSYGDLNKAEYWAQKAADSGDADACALLAQIKITN
PVSLDYPDAKKLAEKAANAGSKAGEITLARILVNTQAGRPDYPKAISLLQKASEDLDNDSAVDAQMLLGLIYANGVGIAA
DDEKAAWYFKRSSAISRTGYSEYWAGMMFLNGEPGFIEKNKQKALHWLNLSCLEGFDTGCEEFETLTNG
>Mature_229_residues
MKLLLALMLFMTFFAHAADPEPGSQYLQAAEAGDRRAQYFLADSWLSYGDLNKAEYWAQKAADSGDADACALLAQIKITN
PVSLDYPDAKKLAEKAANAGSKAGEITLARILVNTQAGRPDYPKAISLLQKASEDLDNDSAVDAQMLLGLIYANGVGIAA
DDEKAAWYFKRSSAISRTGYSEYWAGMMFLNGEPGFIEKNKQKALHWLNLSCLEGFDTGCEEFETLTNG

Specific function: Unknown

COG id: COG0790

COG function: function code R; FOG: TPR repeat, SEL1 subfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1790515, Length=229, Percent_Identity=88.646288209607, Blast_Score=421, Evalue=1e-119,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006597
- InterPro:   IPR011990 [H]

Pfam domain/function: PF08238 Sel1 [H]

EC number: NA

Molecular weight: Translated: 24972; Mature: 24972

Theoretical pI: Translated: 4.46; Mature: 4.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLLLALMLFMTFFAHAADPEPGSQYLQAAEAGDRRAQYFLADSWLSYGDLNKAEYWAQK
CHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHH
AADSGDADACALLAQIKITNPVSLDYPDAKKLAEKAANAGSKAGEITLARILVNTQAGRP
HCCCCCHHHHHHHHHHEECCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCC
DYPKAISLLQKASEDLDNDSAVDAQMLLGLIYANGVGIAADDEKAAWYFKRSSAISRTGY
CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEECCCCCHHEEEHHCCHHHHCCC
SEYWAGMMFLNGEPGFIEKNKQKALHWLNLSCLEGFDTGCEEFETLTNG
HHHHCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCC
>Mature Secondary Structure
MKLLLALMLFMTFFAHAADPEPGSQYLQAAEAGDRRAQYFLADSWLSYGDLNKAEYWAQK
CHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHH
AADSGDADACALLAQIKITNPVSLDYPDAKKLAEKAANAGSKAGEITLARILVNTQAGRP
HCCCCCHHHHHHHHHHEECCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCC
DYPKAISLLQKASEDLDNDSAVDAQMLLGLIYANGVGIAADDEKAAWYFKRSSAISRTGY
CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEECCCCCHHEEEHHCCHHHHCCC
SEYWAGMMFLNGEPGFIEKNKQKALHWLNLSCLEGFDTGCEEFETLTNG
HHHHCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]