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The map label for this gene is yocS [H]

Identifier: 16767445

GI number: 16767445

Start: 4416715

End: 4417656

Strand: Reverse

Name: yocS [H]

Synonym: STM4195

Alternate gene names: 16767445

Gene position: 4417656-4416715 (Counterclockwise)

Preceding gene: 16767446

Following gene: 16767444

Centisome position: 90.95

GC content: 55.31

Gene sequence:

>942_bases
ATGCTCGCCGTCATTACCCGGCTGTTCCCGTTATGGGCGCTGCTGCTCTCTCTCACTGCGTATTACACACCATCCACCTT
TACTCCTGTTGGGCCGTGGGTCGCGACACTACTGATGTTGATTATGTTCGGTATGGGGGTCCATCTTAACGTTGACGACT
TTAAACGCGTGCTCTCCCGACCAGCCCCTGTCGCCGCAGGGATATTCCTGCACTATCTGGTAATGCCGCTCGCGGCATGG
CTGCTGGCGTTGCTGTTTAAGATGCCGCCAGATCTGTCCGCCGGGATGGTACTGGTCGGTAGCGTAGCCAGCGGCACCGC
CTCTAACGTAATGATCTATCTGGCGAAGGGAGACGTCGCGCTCTCAGTCACCATTTCATCGGTCTCCACGCTGGTCGGCG
TGGTCGCCACACCACTACTCACGCGCCTGTACGTCGATGCCCATATTCAAGTCGACGTGATGGGTATGCTGCTGAGCATT
CTACAGATTGTGGTCATTCCAATCACGCTGGGGTTGGTGATTCACCATCTGTTTCCGCGCGTAGTGAAAGTGGTAAAACC
TTATCTGCCAGCATTCTCGATGGTGTGCATTTTGGCAATCATCAGCGCGGTGGTCGCGGGTTCAGCTTCACATATCGCCT
CCGTCGGCTTTATGGTGATCATCGCGGTGATCCTGCATAACACCCTTGGCCTGCTTGGCGGCTACTGGGGTGGACGTCTG
TTCGGTTTTGATGAGTCAACCTGTCGAACGCTGGCGATCGAAGTCGGGATGCAGAACTCTGGTCTTGCTGCTGCATTGGG
TAAAATCTACTTTGGCCCGCTCGCAGCGCTGCCTGGCGCGCTGTTCTCAGTGTGGCACAACCTTTCAGGGTCACTACTGG
CTGGTTACTGGTCCGGGAAACCGATTGTTGAAAAATCGGGCGAAACGGCAAAGGTAAATTAA

Upstream 100 bases:

>100_bases
TTGTTTGAATAATCTTCCTTCACGCGATAAACAATAACTATGGTCTGGCTCGATCCTGACCCGTTGATAACAAACACAAC
ATACTTGCAAGGAAAACAAC

Downstream 100 bases:

>100_bases
AATATTGCCGGGTGGCGCAAGCTTACCCGGCTTACACGCTATCCGCCCGTTGCGTATTGCCGTAGACTAAATGCATCGGC
TAACTGAGGGCACCCGTATG

Product: Na+-dependent transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MLAVITRLFPLWALLLSLTAYYTPSTFTPVGPWVATLLMLIMFGMGVHLNVDDFKRVLSRPAPVAAGIFLHYLVMPLAAW
LLALLFKMPPDLSAGMVLVGSVASGTASNVMIYLAKGDVALSVTISSVSTLVGVVATPLLTRLYVDAHIQVDVMGMLLSI
LQIVVIPITLGLVIHHLFPRVVKVVKPYLPAFSMVCILAIISAVVAGSASHIASVGFMVIIAVILHNTLGLLGGYWGGRL
FGFDESTCRTLAIEVGMQNSGLAAALGKIYFGPLAALPGALFSVWHNLSGSLLAGYWSGKPIVEKSGETAKVN

Sequences:

>Translated_313_residues
MLAVITRLFPLWALLLSLTAYYTPSTFTPVGPWVATLLMLIMFGMGVHLNVDDFKRVLSRPAPVAAGIFLHYLVMPLAAW
LLALLFKMPPDLSAGMVLVGSVASGTASNVMIYLAKGDVALSVTISSVSTLVGVVATPLLTRLYVDAHIQVDVMGMLLSI
LQIVVIPITLGLVIHHLFPRVVKVVKPYLPAFSMVCILAIISAVVAGSASHIASVGFMVIIAVILHNTLGLLGGYWGGRL
FGFDESTCRTLAIEVGMQNSGLAAALGKIYFGPLAALPGALFSVWHNLSGSLLAGYWSGKPIVEKSGETAKVN
>Mature_313_residues
MLAVITRLFPLWALLLSLTAYYTPSTFTPVGPWVATLLMLIMFGMGVHLNVDDFKRVLSRPAPVAAGIFLHYLVMPLAAW
LLALLFKMPPDLSAGMVLVGSVASGTASNVMIYLAKGDVALSVTISSVSTLVGVVATPLLTRLYVDAHIQVDVMGMLLSI
LQIVVIPITLGLVIHHLFPRVVKVVKPYLPAFSMVCILAIISAVVAGSASHIASVGFMVIIAVILHNTLGLLGGYWGGRL
FGFDESTCRTLAIEVGMQNSGLAAALGKIYFGPLAALPGALFSVWHNLSGSLLAGYWSGKPIVEKSGETAKVN

Specific function: Unknown

COG id: COG0385

COG function: function code R; Predicted Na+-dependent transporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:bile acid symporter family [H]

Homologues:

Organism=Homo sapiens, GI4506973, Length=246, Percent_Identity=29.2682926829268, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI4506971, Length=293, Percent_Identity=26.962457337884, Blast_Score=82, Evalue=9e-16,
Organism=Homo sapiens, GI215422368, Length=242, Percent_Identity=30.1652892561983, Blast_Score=78, Evalue=9e-15,
Organism=Homo sapiens, GI215422370, Length=242, Percent_Identity=30.1652892561983, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI9790143, Length=242, Percent_Identity=30.1652892561983, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI58219066, Length=239, Percent_Identity=25.5230125523013, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI37537552, Length=251, Percent_Identity=25.0996015936255, Blast_Score=74, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004710
- InterPro:   IPR002657 [H]

Pfam domain/function: PF01758 SBF [H]

EC number: NA

Molecular weight: Translated: 33154; Mature: 33154

Theoretical pI: Translated: 9.51; Mature: 9.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAVITRLFPLWALLLSLTAYYTPSTFTPVGPWVATLLMLIMFGMGVHLNVDDFKRVLSR
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCC
PAPVAAGIFLHYLVMPLAAWLLALLFKMPPDLSAGMVLVGSVASGTASNVMIYLAKGDVA
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCEEEEEEECCEE
LSVTISSVSTLVGVVATPLLTRLYVDAHIQVDVMGMLLSILQIVVIPITLGLVIHHLFPR
EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VVKVVKPYLPAFSMVCILAIISAVVAGSASHIASVGFMVIIAVILHNTLGLLGGYWGGRL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
FGFDESTCRTLAIEVGMQNSGLAAALGKIYFGPLAALPGALFSVWHNLSGSLLAGYWSGK
ECCCCHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCC
PIVEKSGETAKVN
CCCCCCCCCCCCC
>Mature Secondary Structure
MLAVITRLFPLWALLLSLTAYYTPSTFTPVGPWVATLLMLIMFGMGVHLNVDDFKRVLSR
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCC
PAPVAAGIFLHYLVMPLAAWLLALLFKMPPDLSAGMVLVGSVASGTASNVMIYLAKGDVA
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCEEEEEEECCEE
LSVTISSVSTLVGVVATPLLTRLYVDAHIQVDVMGMLLSILQIVVIPITLGLVIHHLFPR
EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VVKVVKPYLPAFSMVCILAIISAVVAGSASHIASVGFMVIIAVILHNTLGLLGGYWGGRL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
FGFDESTCRTLAIEVGMQNSGLAAALGKIYFGPLAALPGALFSVWHNLSGSLLAGYWSGK
ECCCCHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCC
PIVEKSGETAKVN
CCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]