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The map label for this gene is ygiK [H]

Identifier: 16767318

GI number: 16767318

Start: 4263393

End: 4264700

Strand: Reverse

Name: ygiK [H]

Synonym: STM4052

Alternate gene names: 16767318

Gene position: 4264700-4263393 (Counterclockwise)

Preceding gene: 16767319

Following gene: 16767316

Centisome position: 87.8

GC content: 52.37

Gene sequence:

>1308_bases
ATGATTGACCCTATTTTTGCGTCCTGTACGCTAATTGCCGTCTTTGTTGTTTTACTGGCCATGGGCGCGCCTATCGGGAT
CTGCATCGTTATCGCCTCTTTCAGCACCATGATGCTGGTACTGCCTTTCGATATTTCGATGTTCGCCACCGCGCAAAAAA
TGTTCTCCAGCCTGGACAGTTTTGCCTTGCTGGCCGTGCCGTTCTTCGTTTTGTCCGGGGTGATCATGAATAGCGGGGGA
ATTGCCGCCCGGCTGGTCAATTTTGCCAAACTGTTTACTGGCAAACTGCCCGGCTCGCTCTCTTATACCAACATCGTCGG
CAATATGATGTTCGGTGCAATTTCCGGATCGGCGATTGCCGCCTCAACCTCCATCGGCGGCGTGATGGTGCCGATGAGCG
CGCGCGAAGGTTACGATCGCGGCTTTGCGGCCGCGGTGAATATCGCCTCCGCGCCGACGGGAATGTTAATTCCGCCCACC
ACGGCTTTTATCCTTTACGCGCTGGCAAGCGGGGGAACATCGATTGCCGCTCTGTTCGCCGGCGGTCTGGTCGCGGGAGT
GCTGTGGGGCGTTGGCTGTATGCTGGTCACGCTGGTGGTCGCTAAGCGTCGAAATTATCGGGTTTTCTTCACCGTCCAAA
AAGGTATGGCGCTAAAAGTTGCCGTTGAGGCCATTCCCAGCCTGCTGCTGATCGTGATTATTGTCGGCGGCATTGTGCAG
GGGATTTTCACCGCCATTGAAGCCTCCGCGATTGCCGTGGTGTATACGTTATTGCTGACGATGGTGTTTTACCGCACGCT
GAAAATTAAGGATTTGCCTTCGATTTTGCTCCAGACAGTGGTAATGACCGGGGTCATCATGTTCCTGCTGGCAACCTCTT
CGGCGATGTCCTTCTCGATGTCGATCACCAATATTCCTGCGGCGCTGAGCGATATGATCCTCGGTATTTCCGCCAATAAA
CTGGTTATCCTGTTAGTCATTACCGTCTTTTTGTTGATTATCGGCGCATTTATGGATATTGGTCCGGCCATTCTGATTTT
TACCCCGATTCTGCTGCCAATCATGGCTAAACTGGGCGTCGATCCGGTGCATTTCGGCATTATCATGATCTATAACCTGG
CGATTGGCACCATTACGCCGCCAGTTGGCAGTGGTTTATATGTCGGGGCGAGCGTCGGTAAGGTCAAAGTTGAGGAAGTG
ATTAAACCGTTGCTGCCTTTTTACGGCGCGATTATCGGCGTTCTGTTATTAATTACCTACATTCCGGAAATCACACTGTT
CTTACCCCGTCTACTGGGCATCATGTAA

Upstream 100 bases:

>100_bases
GGCGTACTGATCATCCTCTATGGGCTGCTGAATATCGTTGACGCCCTGAAAGCTATCCATTCCGCCACGGATACCACTGA
GCACACTCTGGAGAAATCAC

Downstream 100 bases:

>100_bases
GCGCATAGTTTCCTGCACATCTCGTTGCCGGATGGCGATTCGCGTCTTATCCGGCCAACGCGCGATAATAATTATCCGCA
GGTCATCACCAGGTAAAAAA

Product: C4-dicarboxylate transport system

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 435; Mature: 435

Protein sequence:

>435_residues
MIDPIFASCTLIAVFVVLLAMGAPIGICIVIASFSTMMLVLPFDISMFATAQKMFSSLDSFALLAVPFFVLSGVIMNSGG
IAARLVNFAKLFTGKLPGSLSYTNIVGNMMFGAISGSAIAASTSIGGVMVPMSAREGYDRGFAAAVNIASAPTGMLIPPT
TAFILYALASGGTSIAALFAGGLVAGVLWGVGCMLVTLVVAKRRNYRVFFTVQKGMALKVAVEAIPSLLLIVIIVGGIVQ
GIFTAIEASAIAVVYTLLLTMVFYRTLKIKDLPSILLQTVVMTGVIMFLLATSSAMSFSMSITNIPAALSDMILGISANK
LVILLVITVFLLIIGAFMDIGPAILIFTPILLPIMAKLGVDPVHFGIIMIYNLAIGTITPPVGSGLYVGASVGKVKVEEV
IKPLLPFYGAIIGVLLLITYIPEITLFLPRLLGIM

Sequences:

>Translated_435_residues
MIDPIFASCTLIAVFVVLLAMGAPIGICIVIASFSTMMLVLPFDISMFATAQKMFSSLDSFALLAVPFFVLSGVIMNSGG
IAARLVNFAKLFTGKLPGSLSYTNIVGNMMFGAISGSAIAASTSIGGVMVPMSAREGYDRGFAAAVNIASAPTGMLIPPT
TAFILYALASGGTSIAALFAGGLVAGVLWGVGCMLVTLVVAKRRNYRVFFTVQKGMALKVAVEAIPSLLLIVIIVGGIVQ
GIFTAIEASAIAVVYTLLLTMVFYRTLKIKDLPSILLQTVVMTGVIMFLLATSSAMSFSMSITNIPAALSDMILGISANK
LVILLVITVFLLIIGAFMDIGPAILIFTPILLPIMAKLGVDPVHFGIIMIYNLAIGTITPPVGSGLYVGASVGKVKVEEV
IKPLLPFYGAIIGVLLLITYIPEITLFLPRLLGIM
>Mature_435_residues
MIDPIFASCTLIAVFVVLLAMGAPIGICIVIASFSTMMLVLPFDISMFATAQKMFSSLDSFALLAVPFFVLSGVIMNSGG
IAARLVNFAKLFTGKLPGSLSYTNIVGNMMFGAISGSAIAASTSIGGVMVPMSAREGYDRGFAAAVNIASAPTGMLIPPT
TAFILYALASGGTSIAALFAGGLVAGVLWGVGCMLVTLVVAKRRNYRVFFTVQKGMALKVAVEAIPSLLLIVIIVGGIVQ
GIFTAIEASAIAVVYTLLLTMVFYRTLKIKDLPSILLQTVVMTGVIMFLLATSSAMSFSMSITNIPAALSDMILGISANK
LVILLVITVFLLIIGAFMDIGPAILIFTPILLPIMAKLGVDPVHFGIIMIYNLAIGTITPPVGSGLYVGASVGKVKVEEV
IKPLLPFYGAIIGVLLLITYIPEITLFLPRLLGIM

Specific function: Unknown

COG id: COG1593

COG function: function code G; TRAP-type C4-dicarboxylate transport system, large permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yiaN/ygiK family [H]

Homologues:

Organism=Escherichia coli, GI48994950, Length=423, Percent_Identity=33.3333333333333, Blast_Score=206, Evalue=2e-54,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010656
- InterPro:   IPR004681 [H]

Pfam domain/function: PF06808 DctM [H]

EC number: NA

Molecular weight: Translated: 45524; Mature: 45524

Theoretical pI: Translated: 9.62; Mature: 9.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
5.5 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
5.5 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDPIFASCTLIAVFVVLLAMGAPIGICIVIASFSTMMLVLPFDISMFATAQKMFSSLDS
CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
FALLAVPFFVLSGVIMNSGGIAARLVNFAKLFTGKLPGSLSYTNIVGNMMFGAISGSAIA
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHE
ASTSIGGVMVPMSAREGYDRGFAAAVNIASAPTGMLIPPTTAFILYALASGGTSIAALFA
ECCCCCCEEEECCCCCCCCCCHHHHEECCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHH
GGLVAGVLWGVGCMLVTLVVAKRRNYRVFFTVQKGMALKVAVEAIPSLLLIVIIVGGIVQ
HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHH
GIFTAIEASAIAVVYTLLLTMVFYRTLKIKDLPSILLQTVVMTGVIMFLLATSSAMSFSM
HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE
SITNIPAALSDMILGISANKLVILLVITVFLLIIGAFMDIGPAILIFTPILLPIMAKLGV
EHHHCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCC
DPVHFGIIMIYNLAIGTITPPVGSGLYVGASVGKVKVEEVIKPLLPFYGAIIGVLLLITY
CHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHH
IPEITLFLPRLLGIM
HHHHHHHHHHHHCCC
>Mature Secondary Structure
MIDPIFASCTLIAVFVVLLAMGAPIGICIVIASFSTMMLVLPFDISMFATAQKMFSSLDS
CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
FALLAVPFFVLSGVIMNSGGIAARLVNFAKLFTGKLPGSLSYTNIVGNMMFGAISGSAIA
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHE
ASTSIGGVMVPMSAREGYDRGFAAAVNIASAPTGMLIPPTTAFILYALASGGTSIAALFA
ECCCCCCEEEECCCCCCCCCCHHHHEECCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHH
GGLVAGVLWGVGCMLVTLVVAKRRNYRVFFTVQKGMALKVAVEAIPSLLLIVIIVGGIVQ
HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHH
GIFTAIEASAIAVVYTLLLTMVFYRTLKIKDLPSILLQTVVMTGVIMFLLATSSAMSFSM
HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE
SITNIPAALSDMILGISANKLVILLVITVFLLIIGAFMDIGPAILIFTPILLPIMAKLGV
EHHHCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCC
DPVHFGIIMIYNLAIGTITPPVGSGLYVGASVGKVKVEEVIKPLLPFYGAIIGVLLLITY
CHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHH
IPEITLFLPRLLGIM
HHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11677609 [H]