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The map label for this gene is rhaR [H]

Identifier: 16767315

GI number: 16767315

Start: 4260054

End: 4260902

Strand: Direct

Name: rhaR [H]

Synonym: STM4049

Alternate gene names: 16767315

Gene position: 4260054-4260902 (Clockwise)

Preceding gene: 16767314

Following gene: 308065948

Centisome position: 87.7

GC content: 49.71

Gene sequence:

>849_bases
GTGGCAAATCAGTTAATCCTTTTGAAAAAAGATTTTTTTACTGATGAGCAGCAGGCCGTTACGGTTGCCGATCGCTATCC
ACAGGATGTTTTTGCGGAACATACGCATGAGTTTTGTGAACTGGTGATGGTCTGGCGGGGCAATGGCCTACACGTTCTTA
ATGAGCGCCCATACAGAATTACCCGCGGCGATCTGTTTTACATTCGTGCTGAAGACAAACACTCCTATACTTCCGTTAAC
GATCTGGTGCTGCAAAATATTATTTACTGCCCGGAGCGTTTGAAACTCAATGTAAACTGGCAGGCGATGATTCCCGGCTT
TCAGGGAGCGCAGTGGCATCCTCACTGGCGGCTGGGCAGTATGGGAATGAATCAGGCGCGGCAGGTCATTAACCAGCTTG
AACATGAGAGTAATGGACGCGATCCGCTGGCGAATGAGATGGCGGAATTGCTGTTTGGTCAACTGGTGATGACGTTAAAA
CGGCATCGCTACGCGACCGACGATCTTCCGGCAACCTCCCGAGAAACCCTGTTGGATAAATTAATTACCGCTTTGGCTAA
TAGCCTTGAGTGTCCCTTTGCGCTGGATGCGTTTTGCCAGCAGGAACAATGCAGCGAACGGGTGCTGCGGCAGCAGTTTC
GCGCCCAAACCGGGATGACGATTAATCAATATTTACGCCAGGTCCGTATTTGCCACGCGCAGTATCTGCTTCAGCATAGC
CCGCTGATGATTAGCGAGATTTCGATGCAGTGCGGTTTTGAAGATAGTAATTATTTTTCAGTGGTGTTCACGCGGGAAAC
CGGGATGACGCCGAGCCAATGGCGTCATCTCAGTAATCAAAGCGATTAA

Upstream 100 bases:

>100_bases
AATACCGGATGGCGGCTGCGCCTTACCTGGCCTACGGCGGCGAGCGGTAGACAGAATAAGCGTAGCGCCATCCGGCAAGC
ATTCAACATGAGGTGCTGCG

Downstream 100 bases:

>100_bases
CTGGCCATGCCTAAACCGACAATATTCGCCGCGATAATAATTACCACGCAGCCGAGGCTTAATACAGCAACGGGACGGCG
GCCAGCATTTTTCCACTCTT

Product: transcriptional activator RhaR

Products: NA

Alternate protein names: L-rhamnose operon transcriptional activator rhaR [H]

Number of amino acids: Translated: 282; Mature: 281

Protein sequence:

>282_residues
MANQLILLKKDFFTDEQQAVTVADRYPQDVFAEHTHEFCELVMVWRGNGLHVLNERPYRITRGDLFYIRAEDKHSYTSVN
DLVLQNIIYCPERLKLNVNWQAMIPGFQGAQWHPHWRLGSMGMNQARQVINQLEHESNGRDPLANEMAELLFGQLVMTLK
RHRYATDDLPATSRETLLDKLITALANSLECPFALDAFCQQEQCSERVLRQQFRAQTGMTINQYLRQVRICHAQYLLQHS
PLMISEISMQCGFEDSNYFSVVFTRETGMTPSQWRHLSNQSD

Sequences:

>Translated_282_residues
MANQLILLKKDFFTDEQQAVTVADRYPQDVFAEHTHEFCELVMVWRGNGLHVLNERPYRITRGDLFYIRAEDKHSYTSVN
DLVLQNIIYCPERLKLNVNWQAMIPGFQGAQWHPHWRLGSMGMNQARQVINQLEHESNGRDPLANEMAELLFGQLVMTLK
RHRYATDDLPATSRETLLDKLITALANSLECPFALDAFCQQEQCSERVLRQQFRAQTGMTINQYLRQVRICHAQYLLQHS
PLMISEISMQCGFEDSNYFSVVFTRETGMTPSQWRHLSNQSD
>Mature_281_residues
ANQLILLKKDFFTDEQQAVTVADRYPQDVFAEHTHEFCELVMVWRGNGLHVLNERPYRITRGDLFYIRAEDKHSYTSVND
LVLQNIIYCPERLKLNVNWQAMIPGFQGAQWHPHWRLGSMGMNQARQVINQLEHESNGRDPLANEMAELLFGQLVMTLKR
HRYATDDLPATSRETLLDKLITALANSLECPFALDAFCQQEQCSERVLRQQFRAQTGMTINQYLRQVRICHAQYLLQHSP
LMISEISMQCGFEDSNYFSVVFTRETGMTPSQWRHLSNQSD

Specific function: Activates expression of the rhaSR operon in response to L-rhamnose [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HTH araC/xylS-type DNA-binding domains [H]

Homologues:

Organism=Escherichia coli, GI171474011, Length=282, Percent_Identity=80.1418439716312, Blast_Score=482, Evalue=1e-137,
Organism=Escherichia coli, GI1790339, Length=271, Percent_Identity=33.5793357933579, Blast_Score=163, Evalue=1e-41,
Organism=Escherichia coli, GI1788725, Length=242, Percent_Identity=23.9669421487603, Blast_Score=71, Evalue=9e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 32859; Mature: 32728

Theoretical pI: Translated: 6.43; Mature: 6.43

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANQLILLKKDFFTDEQQAVTVADRYPQDVFAEHTHEFCELVMVWRGNGLHVLNERPYRI
CCCCEEEEECCCCCCCHHEEEHHHHCCHHHHHHHHHHHHHEEHEECCCCEEEECCCCCEE
TRGDLFYIRAEDKHSYTSVNDLVLQNIIYCPERLKLNVNWQAMIPGFQGAQWHPHWRLGS
ECCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCCC
MGMNQARQVINQLEHESNGRDPLANEMAELLFGQLVMTLKRHRYATDDLPATSRETLLDK
CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
LITALANSLECPFALDAFCQQEQCSERVLRQQFRAQTGMTINQYLRQVRICHAQYLLQHS
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC
PLMISEISMQCGFEDSNYFSVVFTRETGMTPSQWRHLSNQSD
CHHHHHHHHHCCCCCCCEEEEEEEECCCCCHHHHHHHCCCCC
>Mature Secondary Structure 
ANQLILLKKDFFTDEQQAVTVADRYPQDVFAEHTHEFCELVMVWRGNGLHVLNERPYRI
CCCEEEEECCCCCCCHHEEEHHHHCCHHHHHHHHHHHHHEEHEECCCCEEEECCCCCEE
TRGDLFYIRAEDKHSYTSVNDLVLQNIIYCPERLKLNVNWQAMIPGFQGAQWHPHWRLGS
ECCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCCC
MGMNQARQVINQLEHESNGRDPLANEMAELLFGQLVMTLKRHRYATDDLPATSRETLLDK
CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
LITALANSLECPFALDAFCQQEQCSERVLRQQFRAQTGMTINQYLRQVRICHAQYLLQHS
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC
PLMISEISMQCGFEDSNYFSVVFTRETGMTPSQWRHLSNQSD
CHHHHHHHHHCCCCCCCEEEEEEEECCCCCHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA