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The map label for this gene is rhaB [H]

Identifier: 16767313

GI number: 16767313

Start: 4257308

End: 4258777

Strand: Reverse

Name: rhaB [H]

Synonym: STM4047

Alternate gene names: 16767313

Gene position: 4258777-4257308 (Counterclockwise)

Preceding gene: 16767316

Following gene: 16767312

Centisome position: 87.68

GC content: 54.97

Gene sequence:

>1470_bases
ATGACTTTTCGCCATTGTGTCGCGGTTGATCTCGGCGCATCCAGCGGGCGCGTGATGCTGGCGCGTTACGACAGCAAACA
CCGTACCCTGACGCTACGTGAAATTCACCGTTTTGTGAACTGCCTACAAAAAACAGACGGGTTTGACACCTGGGACATCG
ACAGTCTGGAAAAGGATATCCGTCTTGGTCTGAAGAAAGTCTGCAATGAAGGCATTCTTATCGACAGCATCGGCATCGAC
ACCTGGGGCGTCGATTATGTCCTGCTGGATAAACAAGGTCAGCGTGTCGGCCTGCCGGTCTCCTACCGCGATAACCGTAC
CACGGGCATCATGCCGCAAGCGCTGGTCCAGATCGGCAAAAGCGAAATCTATCGCCGCAGCGGGATTCAGTTTCTGCCGT
TTAACACCATCTATCAGCTACGCGCGCTGACGAAACAACAGCCTGAGTTAACGGCGCAGGTCGCTCATGCGCTGCTGATG
CCCGATTATTTCAGCTACCGCCTGACCGGTGAAATGAACTGGGAATACACCAACGCCACGACCACCCAGTTGGTCAATAT
CAATACCGATGACTGGGACGATACCCTGCTGGCGTGGACTGGCGCGAAAAAGAGCTGGTTCGGTCGCCCCTCGCACCCTG
GCAATGTTATCGGCGACTGGATTTGCCCGCAGGGCAACCGTATTCCGGTGGTAGCCGTCGCCAGCCACGATACCGCCAGC
GCCGTTATTGCCTCTCCGCTGGCAAATAAACATAGCGCTTACCTGTCTTCAGGCACCTGGTCATTGATGGGTTTTGAAAG
CAAAATGCCCTACACCACTGATGAGGCGCTGGCCGCCAATATCACCAACGAAGGCGGCGCGGAAGGGCGTTATCGGGTAC
TGAAAAACATTATGGGTTTGTGGCTGCTCCAGCGTGTGCTGAAAGAACGGCGCATTACCGATCTGCCTGCGCTTATCGCC
CAAACAGAAGCGCTGCCGGCCTGCCGTTTCCTGATTAACCCGAATGACGATCGCTTTATCAATCCTGACGATATGCGCGC
TGAAATCCAGGCAGCCTGTCGCGAGACCGACCAGCCCGTTCCCGTCAGCGATGCCGAACTGGCGCGCTGCATTTTCGACA
GTCTGGCGCTGTTGTATGCCGACATTCTGCACGAACAGGCAAATCTGCGCGGCGAAAAATTTACCCAACTGCATATTGTC
GGCGGCGGATGCCAAAACTCGCTACTCAACCAGTTGTGCGCCGATGCATGTGGCATTCGCGTGATGGCCGGGCCGGTTGA
AGCCTCCACCCTTGGCAATATTGGTATTCAGCTTATGACCCTCGACGAATTAAACAACGTCGATGACTTCCGTCAGGTCG
TCAGCGCTAACTACGACCTGACAACCTATATCCCTAATCCTGATAGTGAAATTGCCCGCCACGTTGCGCAGTTTCAACCC
AAACGACAGACAAAGGAGCTTTGCGCATGA

Upstream 100 bases:

>100_bases
TGCCTTGTTGCCAGCGGCTCATTTTCCTGTCAGTAACGAGAAGGTAGGTCTTTGAGGGCTTTTTTAGACTGTGCGCAATG
ACTCTAAGAAGGACCTGATT

Downstream 100 bases:

>100_bases
CCACTCAACTGGAACAAGCCTGGGAACTGGCAAAACAACGTTTCGCCGCAGTAGGTATTGATGTCGAGGAGGCGCTGCGC
CAGCTCGATCGCCTGCCGGT

Product: rhamnulokinase

Products: NA

Alternate protein names: Rhamnulose kinase [H]

Number of amino acids: Translated: 489; Mature: 488

Protein sequence:

>489_residues
MTFRHCVAVDLGASSGRVMLARYDSKHRTLTLREIHRFVNCLQKTDGFDTWDIDSLEKDIRLGLKKVCNEGILIDSIGID
TWGVDYVLLDKQGQRVGLPVSYRDNRTTGIMPQALVQIGKSEIYRRSGIQFLPFNTIYQLRALTKQQPELTAQVAHALLM
PDYFSYRLTGEMNWEYTNATTTQLVNINTDDWDDTLLAWTGAKKSWFGRPSHPGNVIGDWICPQGNRIPVVAVASHDTAS
AVIASPLANKHSAYLSSGTWSLMGFESKMPYTTDEALAANITNEGGAEGRYRVLKNIMGLWLLQRVLKERRITDLPALIA
QTEALPACRFLINPNDDRFINPDDMRAEIQAACRETDQPVPVSDAELARCIFDSLALLYADILHEQANLRGEKFTQLHIV
GGGCQNSLLNQLCADACGIRVMAGPVEASTLGNIGIQLMTLDELNNVDDFRQVVSANYDLTTYIPNPDSEIARHVAQFQP
KRQTKELCA

Sequences:

>Translated_489_residues
MTFRHCVAVDLGASSGRVMLARYDSKHRTLTLREIHRFVNCLQKTDGFDTWDIDSLEKDIRLGLKKVCNEGILIDSIGID
TWGVDYVLLDKQGQRVGLPVSYRDNRTTGIMPQALVQIGKSEIYRRSGIQFLPFNTIYQLRALTKQQPELTAQVAHALLM
PDYFSYRLTGEMNWEYTNATTTQLVNINTDDWDDTLLAWTGAKKSWFGRPSHPGNVIGDWICPQGNRIPVVAVASHDTAS
AVIASPLANKHSAYLSSGTWSLMGFESKMPYTTDEALAANITNEGGAEGRYRVLKNIMGLWLLQRVLKERRITDLPALIA
QTEALPACRFLINPNDDRFINPDDMRAEIQAACRETDQPVPVSDAELARCIFDSLALLYADILHEQANLRGEKFTQLHIV
GGGCQNSLLNQLCADACGIRVMAGPVEASTLGNIGIQLMTLDELNNVDDFRQVVSANYDLTTYIPNPDSEIARHVAQFQP
KRQTKELCA
>Mature_488_residues
TFRHCVAVDLGASSGRVMLARYDSKHRTLTLREIHRFVNCLQKTDGFDTWDIDSLEKDIRLGLKKVCNEGILIDSIGIDT
WGVDYVLLDKQGQRVGLPVSYRDNRTTGIMPQALVQIGKSEIYRRSGIQFLPFNTIYQLRALTKQQPELTAQVAHALLMP
DYFSYRLTGEMNWEYTNATTTQLVNINTDDWDDTLLAWTGAKKSWFGRPSHPGNVIGDWICPQGNRIPVVAVASHDTASA
VIASPLANKHSAYLSSGTWSLMGFESKMPYTTDEALAANITNEGGAEGRYRVLKNIMGLWLLQRVLKERRITDLPALIAQ
TEALPACRFLINPNDDRFINPDDMRAEIQAACRETDQPVPVSDAELARCIFDSLALLYADILHEQANLRGEKFTQLHIVG
GGCQNSLLNQLCADACGIRVMAGPVEASTLGNIGIQLMTLDELNNVDDFRQVVSANYDLTTYIPNPDSEIARHVAQFQPK
RQTKELCA

Specific function: Metabolism of L-rhamnose; second step. [C]

COG id: COG1070

COG function: function code G; Sugar (pentulose and hexulose) kinases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rhamnulokinase family [H]

Homologues:

Organism=Escherichia coli, GI1790338, Length=489, Percent_Identity=80.9815950920245, Blast_Score=840, Evalue=0.0,
Organism=Escherichia coli, GI1789168, Length=411, Percent_Identity=26.2773722627737, Blast_Score=98, Evalue=1e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000577
- InterPro:   IPR018485
- InterPro:   IPR018484
- InterPro:   IPR013449 [H]

Pfam domain/function: PF02782 FGGY_C; PF00370 FGGY_N [H]

EC number: =2.7.1.5 [H]

Molecular weight: Translated: 54579; Mature: 54448

Theoretical pI: Translated: 5.83; Mature: 5.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFRHCVAVDLGASSGRVMLARYDSKHRTLTLREIHRFVNCLQKTDGFDTWDIDSLEKDI
CCCCEEEEEEECCCCCEEEEEEECCCCCEEEHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
RLGLKKVCNEGILIDSIGIDTWGVDYVLLDKQGQRVGLPVSYRDNRTTGIMPQALVQIGK
HHHHHHHCCCCEEEEECCCCCCCCCEEEECCCCCEECCEEEECCCCCCCCCHHHHHHHHH
SEIYRRSGIQFLPFNTIYQLRALTKQQPELTAQVAHALLMPDYFSYRLTGEMNWEYTNAT
HHHHHHCCCEECCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEEEEECEEECCCC
TTQLVNINTDDWDDTLLAWTGAKKSWFGRPSHPGNVIGDWICPQGNRIPVVAVASHDTAS
EEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCHH
AVIASPLANKHSAYLSSGTWSLMGFESKMPYTTDEALAANITNEGGAEGRYRVLKNIMGL
HHHHHHHCCCCHHHHCCCCEEEEEECCCCCCCCCHHHEEECCCCCCCCHHHHHHHHHHHH
WLLQRVLKERRITDLPALIAQTEALPACRFLINPNDDRFINPDDMRAEIQAACRETDQPV
HHHHHHHHHCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCC
PVSDAELARCIFDSLALLYADILHEQANLRGEKFTQLHIVGGGCQNSLLNQLCADACGIR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCE
VMAGPVEASTLGNIGIQLMTLDELNNVDDFRQVVSANYDLTTYIPNPDSEIARHVAQFQP
EEECCCCCCHHCCCCEEEEEHHHCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHCCC
KRQTKELCA
CHHHHHHCC
>Mature Secondary Structure 
TFRHCVAVDLGASSGRVMLARYDSKHRTLTLREIHRFVNCLQKTDGFDTWDIDSLEKDI
CCCEEEEEEECCCCCEEEEEEECCCCCEEEHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
RLGLKKVCNEGILIDSIGIDTWGVDYVLLDKQGQRVGLPVSYRDNRTTGIMPQALVQIGK
HHHHHHHCCCCEEEEECCCCCCCCCEEEECCCCCEECCEEEECCCCCCCCCHHHHHHHHH
SEIYRRSGIQFLPFNTIYQLRALTKQQPELTAQVAHALLMPDYFSYRLTGEMNWEYTNAT
HHHHHHCCCEECCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEEEEECEEECCCC
TTQLVNINTDDWDDTLLAWTGAKKSWFGRPSHPGNVIGDWICPQGNRIPVVAVASHDTAS
EEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCHH
AVIASPLANKHSAYLSSGTWSLMGFESKMPYTTDEALAANITNEGGAEGRYRVLKNIMGL
HHHHHHHCCCCHHHHCCCCEEEEEECCCCCCCCCHHHEEECCCCCCCCHHHHHHHHHHHH
WLLQRVLKERRITDLPALIAQTEALPACRFLINPNDDRFINPDDMRAEIQAACRETDQPV
HHHHHHHHHCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCC
PVSDAELARCIFDSLALLYADILHEQANLRGEKFTQLHIVGGGCQNSLLNQLCADACGIR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCE
VMAGPVEASTLGNIGIQLMTLDELNNVDDFRQVVSANYDLTTYIPNPDSEIARHVAQFQP
EEECCCCCCHHCCCCEEEEEHHHCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHCCC
KRQTKELCA
CHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA