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The map label for this gene is rbn [C]

Identifier: 16767292

GI number: 16767292

Start: 4237342

End: 4238214

Strand: Direct

Name: rbn [C]

Synonym: STM4027

Alternate gene names: 16767292

Gene position: 4237342-4238214 (Clockwise)

Preceding gene: 16767291

Following gene: 16767293

Centisome position: 87.23

GC content: 50.52

Gene sequence:

>873_bases
ATGCTAAAAACCGTTCACCAAAAAGCTGGACGCCATACGCGCCCTGTTCGGGCCTGGCTCAAGCTATTATGGCAGCGTAT
CGATGAGGATAATATGACGACTCTGGCGGGAAACCTCGCCTATGTCTCATTACTCTCCTTAGTACCGCTTATTGCCGTCG
TTTTTGCCCTTTTCGCTGCTTTTCCGATGTTTTCTGATGTCAGCATTCAGTTACGCCATTTTATTTTTGCTAACTTTATG
CCAGCCACCGGAGACGTGATTCAGCGCTATATTGAGCAGTTTGTCGCTAATTCCAACAAAATGACGGCGGTGGGCGCCTG
TGGACTGATTGTGACGGCATTGCTGTTGATGTACGCCATTGATAGCGCCTTAAACACTATCTGGCGCAGCAAACGCACAC
GGCCAAAAGTGTACTCTTTTGCGGTGTACTGGATGATCCTCACGCTCGGCCCGCTTCTCGCTGGCGTCAGCCTGGCGATC
AGCTCCTACCTGCTTTCTTTACGCTGGGCCAGCGATCTGAATACGGTCATCGACAATGTATTGCACATCCTTCCGCTGCT
GCTCTCGTGGATCTCATTCTGGTTACTTTACAGTATTGTCCCAACGACTCGCGTACCGAACCGTGACGCCCTTGTCGGCG
CGTTTGTCGCAGCGTTGCTGTTCGAGGCCGGAAAGAAAGGTTTCGCGCTTTATATCACCATGTTCCCGTCATATCAGCTC
ATTTATGGCGTACTGGCAGTGATCCCTATCCTGTTTGTCTGGGTATACTGGACCTGGTGTATAGTCTTGCTTGGCGCAGA
AATAACTGTCACTCTCGGGGAATACCGAAAACTCAAACAAGCCGCAGAACAAGAAGAAGCTGACCAACCATGA

Upstream 100 bases:

>100_bases
ACGACAATGCCGATAATATAGAAGGGGCCAACCAGTTGGGGATCACCAGTATTCTGGTGAAGGATAAAGCCACCATCCCT
GACTATTTCGCGAAGCTGTT

Downstream 100 bases:

>100_bases
TTGCATTAATTCAACGCGTAACCCGTGCCAGCGTCACCGTGGAGGACGAGGTGACGGGTAAAATCGGCCCAGGACTTTTG
GTGTTATTGGGTGTCGAAAA

Product: ribonuclease BN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 290; Mature: 290

Protein sequence:

>290_residues
MLKTVHQKAGRHTRPVRAWLKLLWQRIDEDNMTTLAGNLAYVSLLSLVPLIAVVFALFAAFPMFSDVSIQLRHFIFANFM
PATGDVIQRYIEQFVANSNKMTAVGACGLIVTALLLMYAIDSALNTIWRSKRTRPKVYSFAVYWMILTLGPLLAGVSLAI
SSYLLSLRWASDLNTVIDNVLHILPLLLSWISFWLLYSIVPTTRVPNRDALVGAFVAALLFEAGKKGFALYITMFPSYQL
IYGVLAVIPILFVWVYWTWCIVLLGAEITVTLGEYRKLKQAAEQEEADQP

Sequences:

>Translated_290_residues
MLKTVHQKAGRHTRPVRAWLKLLWQRIDEDNMTTLAGNLAYVSLLSLVPLIAVVFALFAAFPMFSDVSIQLRHFIFANFM
PATGDVIQRYIEQFVANSNKMTAVGACGLIVTALLLMYAIDSALNTIWRSKRTRPKVYSFAVYWMILTLGPLLAGVSLAI
SSYLLSLRWASDLNTVIDNVLHILPLLLSWISFWLLYSIVPTTRVPNRDALVGAFVAALLFEAGKKGFALYITMFPSYQL
IYGVLAVIPILFVWVYWTWCIVLLGAEITVTLGEYRKLKQAAEQEEADQP
>Mature_290_residues
MLKTVHQKAGRHTRPVRAWLKLLWQRIDEDNMTTLAGNLAYVSLLSLVPLIAVVFALFAAFPMFSDVSIQLRHFIFANFM
PATGDVIQRYIEQFVANSNKMTAVGACGLIVTALLLMYAIDSALNTIWRSKRTRPKVYSFAVYWMILTLGPLLAGVSLAI
SSYLLSLRWASDLNTVIDNVLHILPLLLSWISFWLLYSIVPTTRVPNRDALVGAFVAALLFEAGKKGFALYITMFPSYQL
IYGVLAVIPILFVWVYWTWCIVLLGAEITVTLGEYRKLKQAAEQEEADQP

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0761 family [H]

Homologues:

Organism=Escherichia coli, GI1790319, Length=290, Percent_Identity=93.1034482758621, Blast_Score=548, Evalue=1e-157,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017039
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 32654; Mature: 32654

Theoretical pI: Translated: 9.56; Mature: 9.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKTVHQKAGRHTRPVRAWLKLLWQRIDEDNMTTLAGNLAYVSLLSLVPLIAVVFALFAA
CCCCHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FPMFSDVSIQLRHFIFANFMPATGDVIQRYIEQFVANSNKMTAVGACGLIVTALLLMYAI
HCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
DSALNTIWRSKRTRPKVYSFAVYWMILTLGPLLAGVSLAISSYLLSLRWASDLNTVIDNV
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LHILPLLLSWISFWLLYSIVPTTRVPNRDALVGAFVAALLFEAGKKGFALYITMFPSYQL
HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHH
IYGVLAVIPILFVWVYWTWCIVLLGAEITVTLGEYRKLKQAAEQEEADQP
HHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MLKTVHQKAGRHTRPVRAWLKLLWQRIDEDNMTTLAGNLAYVSLLSLVPLIAVVFALFAA
CCCCHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FPMFSDVSIQLRHFIFANFMPATGDVIQRYIEQFVANSNKMTAVGACGLIVTALLLMYAI
HCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
DSALNTIWRSKRTRPKVYSFAVYWMILTLGPLLAGVSLAISSYLLSLRWASDLNTVIDNV
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LHILPLLLSWISFWLLYSIVPTTRVPNRDALVGAFVAALLFEAGKKGFALYITMFPSYQL
HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHH
IYGVLAVIPILFVWVYWTWCIVLLGAEITVTLGEYRKLKQAAEQEEADQP
HHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA