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The map label for this gene is ompL [H]

Identifier: 16767281

GI number: 16767281

Start: 4225010

End: 4225702

Strand: Reverse

Name: ompL [H]

Synonym: STM4016

Alternate gene names: 16767281

Gene position: 4225702-4225010 (Counterclockwise)

Preceding gene: 16767282

Following gene: 16767280

Centisome position: 86.99

GC content: 39.54

Gene sequence:

>693_bases
ATGAAATCTCTGAATACTCTAGTGATATTAACTTCAGTAATATCCACCTCTGTTTTTGCTGGCGCTTATGTAGAAAACCG
TGAGGCCTATAACCTGGCGTCTGACCAAATGGAGTTTATGCTGCGCGTCGGCTATAACTCCGATATGGGGGCCGGAATTA
TGTTGACCAATACCTATACGCTACAGCGTGATGATGAATTAAAGCACGGTTATAATGAGATTGAGGGCTGGTATCCATTA
TTTAAACCTACAGATAAATTAACCATCCAGCCTGGGGGGTTAATAAACGACAAAAGCATTGGTTCCGGCGGCGCCGTCTA
TCTGGATGTTAACTATAAATTTACCCCGTGGTTTAATCTTACGGTACGTAACCGATATAATCACAATAATTATAGTTCAA
CCGATTTGAATGGCGAACTGGATAATAATGACAGCTATGAAATCGGTAACTATTGGAATTTTATCATTACCGATAAATTT
TCTTATACCTTTGAACCACACTATTTTTATAACGTTAATGATTTTAATAGTAGTAATGGTACGAAGCATCATTGGGAAAT
CACTAATACCTTCCGTTATCGTATCAATGAACACTGGTTGCCCTACTTTGAATTACGCTGGTTAGATCGTAACGTGGGCC
CCTACCATAGAGAGCAAAACCAGATTCGTATCGGGGCGAAGTATTTCTTCTGA

Upstream 100 bases:

>100_bases
AATAAACAAAGTATTTCTACTGTAAATAATTAAACGACGCTTGCCGCTTTATCCATCCCGATGGATGGCGGCTTCCCTAT
ATTTGAAAAATGGATTTATT

Downstream 100 bases:

>100_bases
TATTATTGCCTCTATTTTACGAATCAGCATCACAGCGGGTAGTTGTTCTGCCCGCTCATTCATCCTGAATCAGACTCCCG
ATATCCCGCCCCTAAGCGCC

Product: outer membrane porin L

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MKSLNTLVILTSVISTSVFAGAYVENREAYNLASDQMEFMLRVGYNSDMGAGIMLTNTYTLQRDDELKHGYNEIEGWYPL
FKPTDKLTIQPGGLINDKSIGSGGAVYLDVNYKFTPWFNLTVRNRYNHNNYSSTDLNGELDNNDSYEIGNYWNFIITDKF
SYTFEPHYFYNVNDFNSSNGTKHHWEITNTFRYRINEHWLPYFELRWLDRNVGPYHREQNQIRIGAKYFF

Sequences:

>Translated_230_residues
MKSLNTLVILTSVISTSVFAGAYVENREAYNLASDQMEFMLRVGYNSDMGAGIMLTNTYTLQRDDELKHGYNEIEGWYPL
FKPTDKLTIQPGGLINDKSIGSGGAVYLDVNYKFTPWFNLTVRNRYNHNNYSSTDLNGELDNNDSYEIGNYWNFIITDKF
SYTFEPHYFYNVNDFNSSNGTKHHWEITNTFRYRINEHWLPYFELRWLDRNVGPYHREQNQIRIGAKYFF
>Mature_230_residues
MKSLNTLVILTSVISTSVFAGAYVENREAYNLASDQMEFMLRVGYNSDMGAGIMLTNTYTLQRDDELKHGYNEIEGWYPL
FKPTDKLTIQPGGLINDKSIGSGGAVYLDVNYKFTPWFNLTVRNRYNHNNYSSTDLNGELDNNDSYEIGNYWNFIITDKF
SYTFEPHYFYNVNDFNSSNGTKHHWEITNTFRYRINEHWLPYFELRWLDRNVGPYHREQNQIRIGAKYFF

Specific function: Outer membrane channel protein that allows an efficient diffusion of low-molecular-weight solutes such as small sugars and tetraglycine. However, the specific substrate recognized by the ompL channel is unknown [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the oligogalacturonate-specific porin kdgM (TC 1.B.35) family. OmpL subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790307, Length=230, Percent_Identity=88.2608695652174, Blast_Score=427, Evalue=1e-121,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009331 [H]

Pfam domain/function: PF06178 KdgM [H]

EC number: NA

Molecular weight: Translated: 27105; Mature: 27105

Theoretical pI: Translated: 5.88; Mature: 5.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSLNTLVILTSVISTSVFAGAYVENREAYNLASDQMEFMLRVGYNSDMGAGIMLTNTYT
CCCCHHHHHHHHHHHHHHHHCEEECCCCCCCCCHHHEEEEEEECCCCCCCCCEEEEEEEE
LQRDDELKHGYNEIEGWYPLFKPTDKLTIQPGGLINDKSIGSGGAVYLDVNYKFTPWFNL
ECCCCHHHCCHHHCCCEECCCCCCCEEEECCCCEECCCCCCCCCEEEEEECEEECCEEEE
TVRNRYNHNNYSSTDLNGELDNNDSYEIGNYWNFIITDKFSYTFEPHYFYNVNDFNSSNG
EEEECCCCCCCCCCCCCCEECCCCCEEECCEEEEEEEECEEEEECCEEEEEECCCCCCCC
TKHHWEITNTFRYRINEHWLPYFELRWLDRNVGPYHREQNQIRIGAKYFF
CEEEEEEEEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCEEEEEEEECC
>Mature Secondary Structure
MKSLNTLVILTSVISTSVFAGAYVENREAYNLASDQMEFMLRVGYNSDMGAGIMLTNTYT
CCCCHHHHHHHHHHHHHHHHCEEECCCCCCCCCHHHEEEEEEECCCCCCCCCEEEEEEEE
LQRDDELKHGYNEIEGWYPLFKPTDKLTIQPGGLINDKSIGSGGAVYLDVNYKFTPWFNL
ECCCCHHHCCHHHCCCEECCCCCCCEEEECCCCEECCCCCCCCCEEEEEECEEECCEEEE
TVRNRYNHNNYSSTDLNGELDNNDSYEIGNYWNFIITDKFSYTFEPHYFYNVNDFNSSNG
EEEECCCCCCCCCCCCCCEECCCCCEEECCEEEEEEEECEEEEECCEEEEEECCCCCCCC
TKHHWEITNTFRYRINEHWLPYFELRWLDRNVGPYHREQNQIRIGAKYFF
CEEEEEEEEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]