| Definition | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 chromosome, complete genome. |
|---|---|
| Accession | NC_003197 |
| Length | 4,857,432 |
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The map label for this gene is yigP [H]
Identifier: 16767241
GI number: 16767241
Start: 4178056
End: 4178661
Strand: Direct
Name: yigP [H]
Synonym: STM3971
Alternate gene names: 16767241
Gene position: 4178056-4178661 (Clockwise)
Preceding gene: 16767240
Following gene: 16767242
Centisome position: 86.01
GC content: 54.46
Gene sequence:
>606_bases ATGCCTTTTAAACCCTTAGTGACCGCAGGAATTGAAGGTCTCCTCAATACGTTTCTGTATCGTTCGCCAGCGCTGAAATC AGCCAGAACGCGCTTACAGGGAAAAGTACTGTGTGTGAAACTAAAGGGATTTTCGATGCCATTAGTCCTGGTATTCAGTG AACGCCAGGTTGATGTGCTGGGGGCATGGGAAGGCGAAGCGGACTGTACGGTAATCACTCAAGCTAGCGTTTTGCCAAAA CTACGCGATCGTCAGCAGTTGGCCACGCTTATTCGCAGCGGCGAACTGGAAGTGCAGGGCGATATTCAGGTCGTGCAAAA TTTTGTGGCGCTCGCCGATCTCGCCGAATTCGATCCTGCGGAGCTGTTGGCGCCATACACGGGTGATATTGCGGCGGAAA GTATCGGTAAGGTCGTGCGTGGCGGGGCTAAATTCCTGCGCCACGGGTTTCAACGCCAGCAGCGTTATGCCGCTGAAGCG ATCACTGAAGAGTGGCGTATGGCGCCTGGCCCGCTGGAAGTCGCATGGTTTGCCGAAGAAACCGCGGCTGTTGAGCGCGC CGTAGATTCTCTGACCACACGGCTGGAAAAACTGGAGGCCAAATGA
Upstream 100 bases:
>100_bases AGCCATGATGCAGGACGCCGGATTTGAGAGCGTGGATTATTACAATCTGACGGCGGGCGTTGTGGCATTGCACCGTGGTT ATAAATTCTAGGAGGGTGGA
Downstream 100 bases:
>100_bases CGCCAGGTGAAGTACGGCGCCTATATTTCATCATCCGCACGTTTTTAAGCTACGGCCTTGATGAACTCATCCCCCGAATG CGTCTTACACTGCCACTCCG
Product: inner membrane protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 201; Mature: 200
Protein sequence:
>201_residues MPFKPLVTAGIEGLLNTFLYRSPALKSARTRLQGKVLCVKLKGFSMPLVLVFSERQVDVLGAWEGEADCTVITQASVLPK LRDRQQLATLIRSGELEVQGDIQVVQNFVALADLAEFDPAELLAPYTGDIAAESIGKVVRGGAKFLRHGFQRQQRYAAEA ITEEWRMAPGPLEVAWFAEETAAVERAVDSLTTRLEKLEAK
Sequences:
>Translated_201_residues MPFKPLVTAGIEGLLNTFLYRSPALKSARTRLQGKVLCVKLKGFSMPLVLVFSERQVDVLGAWEGEADCTVITQASVLPK LRDRQQLATLIRSGELEVQGDIQVVQNFVALADLAEFDPAELLAPYTGDIAAESIGKVVRGGAKFLRHGFQRQQRYAAEA ITEEWRMAPGPLEVAWFAEETAAVERAVDSLTTRLEKLEAK >Mature_200_residues PFKPLVTAGIEGLLNTFLYRSPALKSARTRLQGKVLCVKLKGFSMPLVLVFSERQVDVLGAWEGEADCTVITQASVLPKL RDRQQLATLIRSGELEVQGDIQVVQNFVALADLAEFDPAELLAPYTGDIAAESIGKVVRGGAKFLRHGFQRQQRYAAEAI TEEWRMAPGPLEVAWFAEETAAVERAVDSLTTRLEKLEAK
Specific function: Unknown
COG id: COG3165
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI2367308, Length=201, Percent_Identity=86.5671641791045, Blast_Score=353, Evalue=6e-99,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003033 [H]
Pfam domain/function: PF02036 SCP2 [H]
EC number: NA
Molecular weight: Translated: 22143; Mature: 22012
Theoretical pI: Translated: 5.42; Mature: 5.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPFKPLVTAGIEGLLNTFLYRSPALKSARTRLQGKVLCVKLKGFSMPLVLVFSERQVDVL CCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCEEEEEECCCCCCEEEEECCCCEEEE GAWEGEADCTVITQASVLPKLRDRQQLATLIRSGELEVQGDIQVVQNFVALADLAEFDPA ECCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHCCCHH ELLAPYTGDIAAESIGKVVRGGAKFLRHGFQRQQRYAAEAITEEWRMAPGPLEVAWFAEE HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHH TAAVERAVDSLTTRLEKLEAK HHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure PFKPLVTAGIEGLLNTFLYRSPALKSARTRLQGKVLCVKLKGFSMPLVLVFSERQVDVL CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCEEEEEECCCCCCEEEEECCCCEEEE GAWEGEADCTVITQASVLPKLRDRQQLATLIRSGELEVQGDIQVVQNFVALADLAEFDPA ECCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHCCCHH ELLAPYTGDIAAESIGKVVRGGAKFLRHGFQRQQRYAAEAITEEWRMAPGPLEVAWFAEE HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHH TAAVERAVDSLTTRLEKLEAK HHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1379743; 9278503 [H]