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The map label for this gene is uvrD [H]

Identifier: 16767221

GI number: 16767221

Start: 4155541

End: 4157703

Strand: Direct

Name: uvrD [H]

Synonym: STM3951

Alternate gene names: 16767221

Gene position: 4155541-4157703 (Clockwise)

Preceding gene: 16767220

Following gene: 16767222

Centisome position: 85.55

GC content: 57.84

Gene sequence:

>2163_bases
ATGGACGTTTCTTACCTGCTCGACAGCCTTAATGATAAACAGCGCGAAGCGGTGGCCGCGCCACGTAGCAACATGCTGGT
GCTGGCGGGCGCGGGAAGCGGGAAAACCCGCGTGCTGGTGCACCGTATCGCCTGGTTACTGAGCGTAGAAAACAACTCGC
CATATTCCATCATGGCGGTGACCTTTACCAATAAAGCGGCGGCGGAAATGCGCCATCGTATTGGCCAGTTGATGGGGACC
AGCCAGGGCGGAATGTGGGTAGGGACGTTCCACGGTCTGGCGCACCGCCTGCTGCGCGCGCATCATATGGACGCTAATTT
GCCGCAGGATTTCCAGATTCTCGACAGCGAAGATCAGATGCGTTTGCTTAAACGCCTGATTAAGGCGATGAATCTTGATG
AGAAGCAGTGGCCGCCGCGTCAGGCGATGTGGTACATCAATAGCCAGAAAGACGAAGGGCTACGCCCGCACCATATCCAA
AGCTATGGCAACCCGGTGGAGCAGACCTGGCAGAAGGTGTATCAGGCCTATCAGGAAGCGTGCGATCGCGCTGGTCTGGT
GGATTTTGCCGAGCTACTGCTGCGCGCTCATGAACTATGGCTGAACAAGCCGCACATCCTGCAACACTATCGCGAGCGGT
TTACTAACATCCTGGTGGACGAATTCCAGGATACCAACAACATTCAGTACGCCTGGGTTCGTCTGCTGGCGGGCGATACC
GGTAAGGTGATGATTGTCGGCGACGATGACCAGTCGATCTACGGCTGGCGCGGGGCCCAGGTAGAGAACATCCAGCGCTT
CCTCAATGATTTCCCCGGCGCGCAGACCATTCGTCTGGAGCAGAATTACCGCTCGACCAGCAACATCCTTAGCGCGGCGA
ACGCTCTGATTGAGAATAACAATGGGCGTTTGGGTAAAAAGCTGTGGACTGACGGCGTTGACGGCGAACCGATATCGCTG
TACTGCGCTTTCAACGAACTGGATGAAGCGCGCTTTGTGGTTAACCGTATCAAAACCTGGCAGGACAACGGCGGCGCGCT
TGCGCAATGCGCCATTCTTTATCGCAGCAACGCCCAGTCGCGCGTGCTGGAAGAAGCGTTATTACAGGCCAGTATGCCGT
ACCGCATTTACGGCGGTATGCGCTTCTTCGAACGCCAGGAGATCAAAGATGCGCTCTCTTATCTGCGTTTGATTGCCAAT
CGCAACGATGATGCCGCCTTTGAACGCGTGGTGAATACCCCAACGCGCGGTATCGGCGACCGCACGCTGGACGTGGTGCG
CCAGACCTCGCGCGATCGCCAGCTAACATTGTGGCAGGTGTGCCGTGAATTGTTACAGGAAAAAGCCCTGGCCGGGCGTG
CGGCCAGCGCGCTGCAACGCTTTATGGAACTGATCGACGCCCTGGCGCAGGAAACCGCCGACATGCCGCTGCATGTGCAG
ACTGACCGGGTGATCAAAGATTCCGGCCTGCGCACCATGTATGAGCAAGAAAAAGGCGAGAAAGGCCAGACGCGCATCGA
AAACTTAGAGGAACTGGTGACGGCAACGCGGCAGTTCAGCTACAACGACGAAGATGAAGATTTGATGCCGTTGCAGGCCT
TCCTCTCTCACGCGGCGCTGGAAGCGGGCGAGGGGCAGGCGGATACCTGGCAGGATGCGGTACAGCTGATGACGCTGCAC
TCGGCCAAAGGCCTGGAGTTTCCGCAGGTGTTTATCGTCGGGATGGAAGAGGGGATGTTCCCCAGCCAGATGTCGCTGGA
TGAGGGCGGGCGTTTGGAAGAGGAGCGTCGTCTGGCCTACGTCGGCGTTACCCGTGCCATGCAGAAACTGACGCTAACCT
ATGCCGAAACTCGCCGTCTGTATGGTAAAGAGGTTTATCATCGCCCGTCGCGTTTCATCGGCGAGTTGCCGGAGGAGTGC
GTGGAAGAGGTCCGTCTGCGCGCCACCGTCAGTCGTCCGGTGAGCCATCAACGAATGGGAACGCCGCTGGCGGAAAACGA
CACAGGCTACAAACTCGGCCAACGCGTGCGCCATGCGAAGTTCGGCGAGGGAACTATTGTCAACCTGGAGGGCAGCGGCG
AGCATAGCCGGTTGCAGGTGGCTTTTCAGGGGCAAGGGATCAAATGGCTGGTTGCCGCGTATGCGAAGCTGGAAACGGTT
TGA

Upstream 100 bases:

>100_bases
GGCGGATGGCGCTATGCTTATCCGCCCTACGATAAGTAGCCCCGGTAAGCGAAGCGCCACCGGGCGTTTTTAGTTTTCAT
GTTTTTACGCGGCGGTGCCA

Downstream 100 bases:

>100_bases
CCGACTCTCATAGTGCCGGATGGCGCGTCTTATCCGGCCTACGCGCTGGCTAACATTTTGATTTGTAGGCCGGATAAGGC
GAAGCCGCCATCCGGCGATA

Product: DNA-dependent helicase II

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 720; Mature: 720

Protein sequence:

>720_residues
MDVSYLLDSLNDKQREAVAAPRSNMLVLAGAGSGKTRVLVHRIAWLLSVENNSPYSIMAVTFTNKAAAEMRHRIGQLMGT
SQGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQMRLLKRLIKAMNLDEKQWPPRQAMWYINSQKDEGLRPHHIQ
SYGNPVEQTWQKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPHILQHYRERFTNILVDEFQDTNNIQYAWVRLLAGDT
GKVMIVGDDDQSIYGWRGAQVENIQRFLNDFPGAQTIRLEQNYRSTSNILSAANALIENNNGRLGKKLWTDGVDGEPISL
YCAFNELDEARFVVNRIKTWQDNGGALAQCAILYRSNAQSRVLEEALLQASMPYRIYGGMRFFERQEIKDALSYLRLIAN
RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQVCRELLQEKALAGRAASALQRFMELIDALAQETADMPLHVQ
TDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFSYNDEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLH
SAKGLEFPQVFIVGMEEGMFPSQMSLDEGGRLEEERRLAYVGVTRAMQKLTLTYAETRRLYGKEVYHRPSRFIGELPEEC
VEEVRLRATVSRPVSHQRMGTPLAENDTGYKLGQRVRHAKFGEGTIVNLEGSGEHSRLQVAFQGQGIKWLVAAYAKLETV

Sequences:

>Translated_720_residues
MDVSYLLDSLNDKQREAVAAPRSNMLVLAGAGSGKTRVLVHRIAWLLSVENNSPYSIMAVTFTNKAAAEMRHRIGQLMGT
SQGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQMRLLKRLIKAMNLDEKQWPPRQAMWYINSQKDEGLRPHHIQ
SYGNPVEQTWQKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPHILQHYRERFTNILVDEFQDTNNIQYAWVRLLAGDT
GKVMIVGDDDQSIYGWRGAQVENIQRFLNDFPGAQTIRLEQNYRSTSNILSAANALIENNNGRLGKKLWTDGVDGEPISL
YCAFNELDEARFVVNRIKTWQDNGGALAQCAILYRSNAQSRVLEEALLQASMPYRIYGGMRFFERQEIKDALSYLRLIAN
RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQVCRELLQEKALAGRAASALQRFMELIDALAQETADMPLHVQ
TDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFSYNDEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLH
SAKGLEFPQVFIVGMEEGMFPSQMSLDEGGRLEEERRLAYVGVTRAMQKLTLTYAETRRLYGKEVYHRPSRFIGELPEEC
VEEVRLRATVSRPVSHQRMGTPLAENDTGYKLGQRVRHAKFGEGTIVNLEGSGEHSRLQVAFQGQGIKWLVAAYAKLETV
>Mature_720_residues
MDVSYLLDSLNDKQREAVAAPRSNMLVLAGAGSGKTRVLVHRIAWLLSVENNSPYSIMAVTFTNKAAAEMRHRIGQLMGT
SQGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQMRLLKRLIKAMNLDEKQWPPRQAMWYINSQKDEGLRPHHIQ
SYGNPVEQTWQKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPHILQHYRERFTNILVDEFQDTNNIQYAWVRLLAGDT
GKVMIVGDDDQSIYGWRGAQVENIQRFLNDFPGAQTIRLEQNYRSTSNILSAANALIENNNGRLGKKLWTDGVDGEPISL
YCAFNELDEARFVVNRIKTWQDNGGALAQCAILYRSNAQSRVLEEALLQASMPYRIYGGMRFFERQEIKDALSYLRLIAN
RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQVCRELLQEKALAGRAASALQRFMELIDALAQETADMPLHVQ
TDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFSYNDEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLH
SAKGLEFPQVFIVGMEEGMFPSQMSLDEGGRLEEERRLAYVGVTRAMQKLTLTYAETRRLYGKEVYHRPSRFIGELPEEC
VEEVRLRATVSRPVSHQRMGTPLAENDTGYKLGQRVRHAKFGEGTIVNLEGSGEHSRLQVAFQGQGIKWLVAAYAKLETV

Specific function: Has both ATPase and helicase activities. Unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present. Involved in the post-incision events of nucleotide exc

COG id: COG0210

COG function: function code L; Superfamily I DNA and RNA helicases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 uvrD-like helicase C-terminal domain [H]

Homologues:

Organism=Escherichia coli, GI2367296, Length=720, Percent_Identity=97.7777777777778, Blast_Score=1472, Evalue=0.0,
Organism=Escherichia coli, GI48994965, Length=641, Percent_Identity=37.9095163806552, Blast_Score=389, Evalue=1e-109,
Organism=Escherichia coli, GI1787196, Length=340, Percent_Identity=28.2352941176471, Blast_Score=98, Evalue=2e-21,
Organism=Saccharomyces cerevisiae, GI6322369, Length=734, Percent_Identity=26.7029972752044, Blast_Score=182, Evalue=2e-46,
Organism=Saccharomyces cerevisiae, GI6324477, Length=693, Percent_Identity=22.9437229437229, Blast_Score=129, Evalue=1e-30,

Paralogues:

None

Copy number: 3000 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005753
- InterPro:   IPR013986
- InterPro:   IPR014017
- InterPro:   IPR000212
- InterPro:   IPR014016 [H]

Pfam domain/function: PF00580 UvrD-helicase [H]

EC number: =3.6.4.12 [H]

Molecular weight: Translated: 81982; Mature: 81982

Theoretical pI: Translated: 6.35; Mature: 6.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVSYLLDSLNDKQREAVAAPRSNMLVLAGAGSGKTRVLVHRIAWLLSVENNSPYSIMAV
CCHHHHHHHCCHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHEECCCCCEEEEEE
TFTNKAAAEMRHRIGQLMGTSQGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQM
EECCHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHCCCCCCCCCCEECCCHHHH
RLLKRLIKAMNLDEKQWPPRQAMWYINSQKDEGLRPHHIQSYGNPVEQTWQKVYQAYQEA
HHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHH
CDRAGLVDFAELLLRAHELWLNKPHILQHYRERFTNILVDEFQDTNNIQYAWVRLLAGDT
HHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHEEHHEEEECCC
GKVMIVGDDDQSIYGWRGAQVENIQRFLNDFPGAQTIRLEQNYRSTSNILSAANALIENN
CEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCC
NGRLGKKLWTDGVDGEPISLYCAFNELDEARFVVNRIKTWQDNGGALAQCAILYRSNAQS
CCCCCHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHH
RVLEEALLQASMPYRIYGGMRFFERQEIKDALSYLRLIANRNDDAAFERVVNTPTRGIGD
HHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCH
RTLDVVRQTSRDRQLTLWQVCRELLQEKALAGRAASALQRFMELIDALAQETADMPLHVQ
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
TDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFSYNDEDEDLMPLQAFLSHAAL
CCCHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
EAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMFPSQMSLDEGGRLEEERRLAY
CCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHH
VGVTRAMQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRATVSRPVSHQRMG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCHHHHHHHHHHHHHHHCCCHHHHCC
TPLAENDTGYKLGQRVRHAKFGEGTIVNLEGSGEHSRLQVAFQGQGIKWLVAAYAKLETV
CCCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MDVSYLLDSLNDKQREAVAAPRSNMLVLAGAGSGKTRVLVHRIAWLLSVENNSPYSIMAV
CCHHHHHHHCCHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHEECCCCCEEEEEE
TFTNKAAAEMRHRIGQLMGTSQGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQM
EECCHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHCCCCCCCCCCEECCCHHHH
RLLKRLIKAMNLDEKQWPPRQAMWYINSQKDEGLRPHHIQSYGNPVEQTWQKVYQAYQEA
HHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHH
CDRAGLVDFAELLLRAHELWLNKPHILQHYRERFTNILVDEFQDTNNIQYAWVRLLAGDT
HHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHEEHHEEEECCC
GKVMIVGDDDQSIYGWRGAQVENIQRFLNDFPGAQTIRLEQNYRSTSNILSAANALIENN
CEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCC
NGRLGKKLWTDGVDGEPISLYCAFNELDEARFVVNRIKTWQDNGGALAQCAILYRSNAQS
CCCCCHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHH
RVLEEALLQASMPYRIYGGMRFFERQEIKDALSYLRLIANRNDDAAFERVVNTPTRGIGD
HHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCH
RTLDVVRQTSRDRQLTLWQVCRELLQEKALAGRAASALQRFMELIDALAQETADMPLHVQ
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
TDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFSYNDEDEDLMPLQAFLSHAAL
CCCHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
EAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMFPSQMSLDEGGRLEEERRLAY
CCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHH
VGVTRAMQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRATVSRPVSHQRMG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCHHHHHHHHHHHHHHHCCCHHHHCC
TPLAENDTGYKLGQRVRHAKFGEGTIVNLEGSGEHSRLQVAFQGQGIKWLVAAYAKLETV
CCCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 6379604; 2943729; 1379743; 9278503; 6324092; 2254268; 8419285 [H]