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The map label for this gene is trkD [H]

Identifier: 16767164

GI number: 16767164

Start: 4089594

End: 4091462

Strand: Direct

Name: trkD [H]

Synonym: STM3880

Alternate gene names: 16767164

Gene position: 4089594-4091462 (Clockwise)

Preceding gene: 16767161

Following gene: 16767165

Centisome position: 84.19

GC content: 53.18

Gene sequence:

>1869_bases
ATGAGCACTGATAATAAGCAATCGTTGCCTGCGATTACCCTCGCAGCTATTGGGGTTGTCTACGGTGATATTGGTACCAG
CCCGCTTTATACGCTTCGTGAATGTTTGTCCGGTCAGTTTGGTTTTGGCGTTGAACGAGATGCCGTATTTGGTTTTCTGT
CGCTGATCTTCTGGCTACTCATCTTTGTGGTTTCCATCAAATATCTCACCTTCGTGATGCGCGCCGATAACGCGGGTGAA
GGTGGAATTTTGACGCTGATGTCGCTTGCCGGGCGTAATACCTCGGCGCGCACCACATCCATGTTAGTTATCATGGGACT
GATAGGCGGCAGCTTTTTCTATGGCGAAGTGGTGATTACGCCGGCGATTTCGGTGATGTCGGCGATTGAAGGCCTGGAGA
TTGTCGCGCCGCAGCTGGATACCTGGATTGTCCCGCTCTCCATTATTGTGCTGACTCTGTTGTTTATGATTCAGAAGCAC
GGTACGGGAATGGTAGGGAAACTCTTTGCGCCGATCATGCTGACCTGGTTTTTAATCCTGGCGGTACTTGGCCTGCGCAG
TATTATCGCCAATCCCGAAGTGTTACATGCGCTGAATCCTGTCTGGGCGGTACGTTTTTTCCTTGAATATAAAACCGTAT
CATTTATTGCGTTGGGCGCGGTGGTGCTGTCGATTACCGGCGTAGAGGCGTTGTACGCCGATATGGGACACTTCGGTAAG
TTCCCGATTCGCCTGGCGTGGTTTACCGTGGTATTGCCGTCGTTAGTACTGAACTACTTTGGTCAGGGCGCATTGCTACT
TAAGCATCCGGAAGCGATTAAAAACCCCTTCTTCCTGTTGGCGCCGGACTGGGCGTTAATTCCGCTGCTGATTCTGGCCG
CGCTGGCGACGGTGATCGCCTCCCAGGCGGTCATTTCCGGCGTCTTTTCGCTGACGCGTCAGGCCGTGCGTCTTGGCTAT
TTGTCGCCAATGCGCATTATCCATACCTCCGAGATGGAGTCCGGTCAGATCTATATCCCTTTCGTTAACTGGCTGCTTTA
TTTCGCGGTCGTGGTTGTTATTGTTAGCTTTGAGCACTCCAGCAACCTGGCGGCGGCCTATGGTATCGCCGTGACCGGCA
CGATGGTGCTGACGTCTATTCTTTCTACGACCGTGGCGCGTAAGAACTGGCACTGGAACAAATATTTTGTCGCGCTGATC
CTCATCGCATTCCTGTGCGTGGATATCCCGCTGTTCTCGGCTAACCTCGATAAATTGTTGTCCGGCGGTTGGCTGCCGCT
GAGCCTGGGTCTGATCATGTTCACGATCATGACCACCTGGAAGAGCGAGCGTTTCCGTCTGTTGCGTCGTATGCATGAAC
ACGGTAATTCGCTGGAAGCGATGATTGCTTCACTGGAGAAGTCACCGCCGGTTCGGGTGCCGGGTACTGCCGTATACATG
TCGCGCGCGCTCAGTGTGATCCCTTTTGCTTTATTGCATAACCTGAAGCACAACAAAGTGTTGCATGAGCGCGTAATCTT
ACTGACGTTGCGTACGGAAGATGCGCCTTATGTGCATAACGTTCGCCGGGTGCAGATTGAGCAGTTGTCTCCGACATTCT
GGCGCGTGGTGGCCAGCTACGGCTGGCGCGAAACGCCAAACGTTGAAGAGGTGTTCCACCGCTGCGGTCTGGAAGGCCTT
AGCTGTCGGATGATGGAAACGTCGTTCTTTATGTCGCACGAGTCGTTGATTGTCGGCAAACGCCCGTGGTATTTGCGTCT
GCGTGGCAAGCTGTATTTGTTGTTGCAACGCAACGCCCTGCGCGCGCCGGATCAGTTCGAGATCCCGCCTAACCGCGTGA
TTGAGTTAGGTACGCAGGTCGAGATTTAA

Upstream 100 bases:

>100_bases
GAATCCCCTGGCACTGACTTAAACGTGTGACTGGGGTAAGCGAATGCAGCCGACAAGGAGGTAGGGTGAAGGGTGACGTG
TATAAACGAAAGATGAGTCT

Downstream 100 bases:

>100_bases
CCTCCCATCAACATGCCGGGGGCCGCGTTGGCTTACCCGGCCTGGCCAATCCGTAGATTCCCACAAGATAATCGCCTGAT
TTCCGCTAGCGAAACGTTTC

Product: potassium transport protein Kup

Products: K (I) [Cytoplasm] [C]

Alternate protein names: Kup system potassium uptake protein [H]

Number of amino acids: Translated: 622; Mature: 621

Protein sequence:

>622_residues
MSTDNKQSLPAITLAAIGVVYGDIGTSPLYTLRECLSGQFGFGVERDAVFGFLSLIFWLLIFVVSIKYLTFVMRADNAGE
GGILTLMSLAGRNTSARTTSMLVIMGLIGGSFFYGEVVITPAISVMSAIEGLEIVAPQLDTWIVPLSIIVLTLLFMIQKH
GTGMVGKLFAPIMLTWFLILAVLGLRSIIANPEVLHALNPVWAVRFFLEYKTVSFIALGAVVLSITGVEALYADMGHFGK
FPIRLAWFTVVLPSLVLNYFGQGALLLKHPEAIKNPFFLLAPDWALIPLLILAALATVIASQAVISGVFSLTRQAVRLGY
LSPMRIIHTSEMESGQIYIPFVNWLLYFAVVVVIVSFEHSSNLAAAYGIAVTGTMVLTSILSTTVARKNWHWNKYFVALI
LIAFLCVDIPLFSANLDKLLSGGWLPLSLGLIMFTIMTTWKSERFRLLRRMHEHGNSLEAMIASLEKSPPVRVPGTAVYM
SRALSVIPFALLHNLKHNKVLHERVILLTLRTEDAPYVHNVRRVQIEQLSPTFWRVVASYGWRETPNVEEVFHRCGLEGL
SCRMMETSFFMSHESLIVGKRPWYLRLRGKLYLLLQRNALRAPDQFEIPPNRVIELGTQVEI

Sequences:

>Translated_622_residues
MSTDNKQSLPAITLAAIGVVYGDIGTSPLYTLRECLSGQFGFGVERDAVFGFLSLIFWLLIFVVSIKYLTFVMRADNAGE
GGILTLMSLAGRNTSARTTSMLVIMGLIGGSFFYGEVVITPAISVMSAIEGLEIVAPQLDTWIVPLSIIVLTLLFMIQKH
GTGMVGKLFAPIMLTWFLILAVLGLRSIIANPEVLHALNPVWAVRFFLEYKTVSFIALGAVVLSITGVEALYADMGHFGK
FPIRLAWFTVVLPSLVLNYFGQGALLLKHPEAIKNPFFLLAPDWALIPLLILAALATVIASQAVISGVFSLTRQAVRLGY
LSPMRIIHTSEMESGQIYIPFVNWLLYFAVVVVIVSFEHSSNLAAAYGIAVTGTMVLTSILSTTVARKNWHWNKYFVALI
LIAFLCVDIPLFSANLDKLLSGGWLPLSLGLIMFTIMTTWKSERFRLLRRMHEHGNSLEAMIASLEKSPPVRVPGTAVYM
SRALSVIPFALLHNLKHNKVLHERVILLTLRTEDAPYVHNVRRVQIEQLSPTFWRVVASYGWRETPNVEEVFHRCGLEGL
SCRMMETSFFMSHESLIVGKRPWYLRLRGKLYLLLQRNALRAPDQFEIPPNRVIELGTQVEI
>Mature_621_residues
STDNKQSLPAITLAAIGVVYGDIGTSPLYTLRECLSGQFGFGVERDAVFGFLSLIFWLLIFVVSIKYLTFVMRADNAGEG
GILTLMSLAGRNTSARTTSMLVIMGLIGGSFFYGEVVITPAISVMSAIEGLEIVAPQLDTWIVPLSIIVLTLLFMIQKHG
TGMVGKLFAPIMLTWFLILAVLGLRSIIANPEVLHALNPVWAVRFFLEYKTVSFIALGAVVLSITGVEALYADMGHFGKF
PIRLAWFTVVLPSLVLNYFGQGALLLKHPEAIKNPFFLLAPDWALIPLLILAALATVIASQAVISGVFSLTRQAVRLGYL
SPMRIIHTSEMESGQIYIPFVNWLLYFAVVVVIVSFEHSSNLAAAYGIAVTGTMVLTSILSTTVARKNWHWNKYFVALIL
IAFLCVDIPLFSANLDKLLSGGWLPLSLGLIMFTIMTTWKSERFRLLRRMHEHGNSLEAMIASLEKSPPVRVPGTAVYMS
RALSVIPFALLHNLKHNKVLHERVILLTLRTEDAPYVHNVRRVQIEQLSPTFWRVVASYGWRETPNVEEVFHRCGLEGLS
CRMMETSFFMSHESLIVGKRPWYLRLRGKLYLLLQRNALRAPDQFEIPPNRVIELGTQVEI

Specific function: Responsible for the low-affinity transport of potassium into the cell, with the probable concomitant uptake of protons (symport system) [H]

COG id: COG3158

COG function: function code P; K+ transporter

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the HAK/KUP transporter (TC 2.A.72) family [H]

Homologues:

Organism=Escherichia coli, GI48994960, Length=622, Percent_Identity=96.7845659163987, Blast_Score=1226, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003855
- InterPro:   IPR023051 [H]

Pfam domain/function: PF02705 K_trans [H]

EC number: NA

Molecular weight: Translated: 69302; Mature: 69171

Theoretical pI: Translated: 9.53; Mature: 9.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTDNKQSLPAITLAAIGVVYGDIGTSPLYTLRECLSGQFGFGVERDAVFGFLSLIFWLL
CCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
IFVVSIKYLTFVMRADNAGEGGILTLMSLAGRNTSARTTSMLVIMGLIGGSFFYGEVVIT
HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHCCHHHHH
PAISVMSAIEGLEIVAPQLDTWIVPLSIIVLTLLFMIQKHGTGMVGKLFAPIMLTWFLIL
HHHHHHHHHCCHHEECCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
AVLGLRSIIANPEVLHALNPVWAVRFFLEYKTVSFIALGAVVLSITGVEALYADMGHFGK
HHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
FPIRLAWFTVVLPSLVLNYFGQGALLLKHPEAIKNPFFLLAPDWALIPLLILAALATVIA
CCHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHCCCEEEECCCHHHHHHHHHHHHHHHHH
SQAVISGVFSLTRQAVRLGYLSPMRIIHTSEMESGQIYIPFVNWLLYFAVVVVIVSFEHS
HHHHHHHHHHHHHHHHHHCCCCCHHEEEECCCCCCEEEEHHHHHHHHHHHHHHHHHCCCC
SNLAAAYGIAVTGTMVLTSILSTTVARKNWHWNKYFVALILIAFLCVDIPLFSANLDKLL
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHCCHHHHH
SGGWLPLSLGLIMFTIMTTWKSERFRLLRRMHEHGNSLEAMIASLEKSPPVRVPGTAVYM
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCHHHHH
SRALSVIPFALLHNLKHNKVLHERVILLTLRTEDAPYVHNVRRVQIEQLSPTFWRVVASY
HHHHHHHHHHHHHCCHHHHHHHCEEEEEEEECCCCCHHHHHHHEEHHHCCHHHHHHHHHC
GWRETPNVEEVFHRCGLEGLSCRMMETSFFMSHESLIVGKRPWYLRLRGKLYLLLQRNAL
CCCCCCCHHHHHHHCCCCCCEEEEEHHHHHHCCCCEEECCCCEEEEEECEEEEEEECCCC
RAPDQFEIPPNRVIELGTQVEI
CCCCCCCCCHHHHHCCCCCCCC
>Mature Secondary Structure 
STDNKQSLPAITLAAIGVVYGDIGTSPLYTLRECLSGQFGFGVERDAVFGFLSLIFWLL
CCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
IFVVSIKYLTFVMRADNAGEGGILTLMSLAGRNTSARTTSMLVIMGLIGGSFFYGEVVIT
HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHCCHHHHH
PAISVMSAIEGLEIVAPQLDTWIVPLSIIVLTLLFMIQKHGTGMVGKLFAPIMLTWFLIL
HHHHHHHHHCCHHEECCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
AVLGLRSIIANPEVLHALNPVWAVRFFLEYKTVSFIALGAVVLSITGVEALYADMGHFGK
HHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
FPIRLAWFTVVLPSLVLNYFGQGALLLKHPEAIKNPFFLLAPDWALIPLLILAALATVIA
CCHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHCCCEEEECCCHHHHHHHHHHHHHHHHH
SQAVISGVFSLTRQAVRLGYLSPMRIIHTSEMESGQIYIPFVNWLLYFAVVVVIVSFEHS
HHHHHHHHHHHHHHHHHHCCCCCHHEEEECCCCCCEEEEHHHHHHHHHHHHHHHHHCCCC
SNLAAAYGIAVTGTMVLTSILSTTVARKNWHWNKYFVALILIAFLCVDIPLFSANLDKLL
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHCCHHHHH
SGGWLPLSLGLIMFTIMTTWKSERFRLLRRMHEHGNSLEAMIASLEKSPPVRVPGTAVYM
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCHHHHH
SRALSVIPFALLHNLKHNKVLHERVILLTLRTEDAPYVHNVRRVQIEQLSPTFWRVVASY
HHHHHHHHHHHHHCCHHHHHHHCEEEEEEEECCCCCHHHHHHHEEHHHCCHHHHHHHHHC
GWRETPNVEEVFHRCGLEGLSCRMMETSFFMSHESLIVGKRPWYLRLRGKLYLLLQRNAL
CCCCCCCHHHHHHHCCCCCCEEEEEHHHHHHCCCCEEECCCCEEEEEECEEEEEEECCCC
RAPDQFEIPPNRVIELGTQVEI
CCCCCCCCCHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: K (I) [Periplasm] [C]

Specific reaction: K (I) [Periplasm] = K (I) [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA