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The map label for this gene is ybhD [H]

Identifier: 16767119

GI number: 16767119

Start: 4037940

End: 4038836

Strand: Direct

Name: ybhD [H]

Synonym: STM3834

Alternate gene names: 16767119

Gene position: 4037940-4038836 (Clockwise)

Preceding gene: 16767118

Following gene: 16767124

Centisome position: 83.13

GC content: 53.4

Gene sequence:

>897_bases
ATGAATTTAACTATCCGGCAATTTCGCGCGTTTCTGGCCGTCGCGGATTTGCGTAGTTTTACCGCCGCCAGCAAATATCT
GTGCATCACGCAGGGAGCTGTTAGCGGTTTAATCAACGAAATGGAAAGCCAGATGGAGGTTTCCCTTTTCGACCGCACTT
CGCGCGTGGTGAAGCTATCGCCCGACGGCGAAAAGTTTTTACCCGCCGCCATGCGGGTTGTTGAAGAGTTTCAACGGGCC
GAAAATTATGCCCGCGACCTGAAAGAGATCAAAAAATCCCTGGTGCGGGTTGTTGGCGCGCCGCTGATCGCCTGTGCTTT
TCTGCCGCAAATCATCCATGCCTTTAAGCGGCAGCATCCGCATACCCACGTACAGCTTATTGATAAGCCCATGTCGCAAT
TACAAAAAAGCATTATGTTGGGAGAAGCCGATTTTGGTATCGGCCCGGAGCGGCCGCTGGAACCGGAAATCGACAAACAA
ACGCTGTTCACAACGGAAATCGCCCTGTACTGCCATCCGGACTATCGGCTGCATAAAAAAACGGTTCGCTGGGAAGAGAT
TCAAAGCGAAGAGCTGATCGCCGTTGGCAACGAATCCATTCCGATGATCTCCGCAACCGCTGGCGTGCGCATTAAGCCCA
AAATGACGGTGGAACATATGGCGACCGCCATGTCGCTGGCGGCGCAGTGTGAAGGCGTGGTGATCGCCGGAACCTTTTCC
CGCCATTACGCCAAAAGCTACCAATTAGCGACCTGTTCGCTCACGCCTCCGCTGCGGCGCAATATGAACCTTTATTTCCA
TGCGTGGCGCGCACAAACGCCCGCCACTCAGCGCTTTAGAGATTTTTTATTCAGCTATGTCGATGAACATCATGATGCCC
CGGCCAACCAGCGGTAG

Upstream 100 bases:

>100_bases
TGCGCCGCAGGCAGACACCCTGTATTTGCGAGTCGTATCAACGCGACCTTATCCAGCCTGAGATAAAATCCTCTCAGTAA
AGGGGTAACACAGGTGGCAA

Downstream 100 bases:

>100_bases
GCCGGGGATTAAGGCAGGTTAAATATCGATATTCGCTGCTTTCAGGGCGTTCTCCTCGATAAAGGCACGACGCGGCTCAA
CGGCATCACCCATCAGCGTA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 298

Protein sequence:

>298_residues
MNLTIRQFRAFLAVADLRSFTAASKYLCITQGAVSGLINEMESQMEVSLFDRTSRVVKLSPDGEKFLPAAMRVVEEFQRA
ENYARDLKEIKKSLVRVVGAPLIACAFLPQIIHAFKRQHPHTHVQLIDKPMSQLQKSIMLGEADFGIGPERPLEPEIDKQ
TLFTTEIALYCHPDYRLHKKTVRWEEIQSEELIAVGNESIPMISATAGVRIKPKMTVEHMATAMSLAAQCEGVVIAGTFS
RHYAKSYQLATCSLTPPLRRNMNLYFHAWRAQTPATQRFRDFLFSYVDEHHDAPANQR

Sequences:

>Translated_298_residues
MNLTIRQFRAFLAVADLRSFTAASKYLCITQGAVSGLINEMESQMEVSLFDRTSRVVKLSPDGEKFLPAAMRVVEEFQRA
ENYARDLKEIKKSLVRVVGAPLIACAFLPQIIHAFKRQHPHTHVQLIDKPMSQLQKSIMLGEADFGIGPERPLEPEIDKQ
TLFTTEIALYCHPDYRLHKKTVRWEEIQSEELIAVGNESIPMISATAGVRIKPKMTVEHMATAMSLAAQCEGVVIAGTFS
RHYAKSYQLATCSLTPPLRRNMNLYFHAWRAQTPATQRFRDFLFSYVDEHHDAPANQR
>Mature_298_residues
MNLTIRQFRAFLAVADLRSFTAASKYLCITQGAVSGLINEMESQMEVSLFDRTSRVVKLSPDGEKFLPAAMRVVEEFQRA
ENYARDLKEIKKSLVRVVGAPLIACAFLPQIIHAFKRQHPHTHVQLIDKPMSQLQKSIMLGEADFGIGPERPLEPEIDKQ
TLFTTEIALYCHPDYRLHKKTVRWEEIQSEELIAVGNESIPMISATAGVRIKPKMTVEHMATAMSLAAQCEGVVIAGTFS
RHYAKSYQLATCSLTPPLRRNMNLYFHAWRAQTPATQRFRDFLFSYVDEHHDAPANQR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=295, Percent_Identity=26.7796610169492, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI1788748, Length=296, Percent_Identity=27.027027027027, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI87081904, Length=231, Percent_Identity=26.8398268398268, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1787601, Length=176, Percent_Identity=28.4090909090909, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI157672245, Length=195, Percent_Identity=26.6666666666667, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788887, Length=182, Percent_Identity=29.6703296703297, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1788481, Length=189, Percent_Identity=24.3386243386243, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1786401, Length=175, Percent_Identity=23.4285714285714, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI48994962, Length=211, Percent_Identity=26.0663507109005, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33835; Mature: 33835

Theoretical pI: Translated: 8.70; Mature: 8.70

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLTIRQFRAFLAVADLRSFTAASKYLCITQGAVSGLINEMESQMEVSLFDRTSRVVKLS
CCCCHHHHHHHHHHHHHHHHHHHHCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC
PDGEKFLPAAMRVVEEFQRAENYARDLKEIKKSLVRVVGAPLIACAFLPQIIHAFKRQHP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
HTHVQLIDKPMSQLQKSIMLGEADFGIGPERPLEPEIDKQTLFTTEIALYCHPDYRLHKK
CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHEEEEEEEEEECCCCHHHHH
TVRWEEIQSEELIAVGNESIPMISATAGVRIKPKMTVEHMATAMSLAAQCEGVVIAGTFS
HHHHHHHCCCCEEEECCCCCCEEEECCCEEECCCHHHHHHHHHHHHHHHCCCEEEEECHH
RHYAKSYQLATCSLTPPLRRNMNLYFHAWRAQTPATQRFRDFLFSYVDEHHDAPANQR
HHHHHCEEEEEECCCCHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MNLTIRQFRAFLAVADLRSFTAASKYLCITQGAVSGLINEMESQMEVSLFDRTSRVVKLS
CCCCHHHHHHHHHHHHHHHHHHHHCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC
PDGEKFLPAAMRVVEEFQRAENYARDLKEIKKSLVRVVGAPLIACAFLPQIIHAFKRQHP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
HTHVQLIDKPMSQLQKSIMLGEADFGIGPERPLEPEIDKQTLFTTEIALYCHPDYRLHKK
CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHEEEEEEEEEECCCCHHHHH
TVRWEEIQSEELIAVGNESIPMISATAGVRIKPKMTVEHMATAMSLAAQCEGVVIAGTFS
HHHHHHHCCCCEEEECCCCCCEEEECCCEEECCCHHHHHHHHHHHHHHHCCCEEEEECHH
RHYAKSYQLATCSLTPPLRRNMNLYFHAWRAQTPATQRFRDFLFSYVDEHHDAPANQR
HHHHHCEEEEEECCCCHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]