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The map label for this gene is dgoR [H]

Identifier: 16767115

GI number: 16767115

Start: 4033255

End: 4033944

Strand: Reverse

Name: dgoR [H]

Synonym: STM3830

Alternate gene names: 16767115

Gene position: 4033944-4033255 (Counterclockwise)

Preceding gene: 16767116

Following gene: 16767114

Centisome position: 83.05

GC content: 53.62

Gene sequence:

>690_bases
ATGACTCTCAATAAAACCGATCGCATCGTTATCACGCTGGGCAAACAGATTGTCAGCGGTAAATACGTACCCGGTTCGGC
GCTGCCAGCGGAAGCGGATCTGTGCGAGGAGTTTGAAACGTCGCGCAACATCATTCGCGAAGTGTTTCGCTCGCTTATGG
CGAAGCGGCTAATTGAAATGAAGCGTTATCGCGGCGCGTTTATCGCACCGCGTAACCAGTGGAATTATCTCGATACCGAC
GTGCTGCAATGGGTGCTGGAAAACGACTACGACCCGAGGCTTATCAGCGCGATGAGCGAAATACGAAACCTGGTGGAGCC
AGCAATAGCACGCTGGGCGGCGGAACGGGCAACATCAAGCGATCTGGCTGAAATTGAGTCGGCGCTAAACGACATGATTG
CCAATAACCAGGACCGGGAAGCGTTTAACGAGGCGGATATTCGCTATCACGAAGCAGTGTTGCAGTCGGTGCATAACCCG
GTGCTGCAACAGTTAAATGTAGCGATCAGCTCGCTACAGCGAGCGGTATTTGAACGGACCTGGATGGGCGATGCGGCCAA
CATGCCGAAAACGCTCCAGGAACATAAGGCGCTATTCGATGCGATACGGCATCAGGATGGCGATGCGGCAGAGCAGGCGG
CATTAACCATGATCGCCAGCTCGACACGAAGGTTAAAGGAAATCACATGA

Upstream 100 bases:

>100_bases
TGATAACGACGGTTGATATCACGCTAGTACTACAAAATTGCGGCGTAATTCAGCTATCGCGGTAAAGTAAGAGAGTTCAC
ATCGAGCACAAGGACTCTCT

Downstream 100 bases:

>100_bases
CAGCTCGCTACATCGCAATTGACTGGGGATCGACCAATCTGCGCGCCTGGCTTTACCAGGGCGACAAATGCCTGGAGAGC
AGGCAATCAGAAGCAGGCGT

Product: galactonate operon transcriptional repressor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 228

Protein sequence:

>229_residues
MTLNKTDRIVITLGKQIVSGKYVPGSALPAEADLCEEFETSRNIIREVFRSLMAKRLIEMKRYRGAFIAPRNQWNYLDTD
VLQWVLENDYDPRLISAMSEIRNLVEPAIARWAAERATSSDLAEIESALNDMIANNQDREAFNEADIRYHEAVLQSVHNP
VLQQLNVAISSLQRAVFERTWMGDAANMPKTLQEHKALFDAIRHQDGDAAEQAALTMIASSTRRLKEIT

Sequences:

>Translated_229_residues
MTLNKTDRIVITLGKQIVSGKYVPGSALPAEADLCEEFETSRNIIREVFRSLMAKRLIEMKRYRGAFIAPRNQWNYLDTD
VLQWVLENDYDPRLISAMSEIRNLVEPAIARWAAERATSSDLAEIESALNDMIANNQDREAFNEADIRYHEAVLQSVHNP
VLQQLNVAISSLQRAVFERTWMGDAANMPKTLQEHKALFDAIRHQDGDAAEQAALTMIASSTRRLKEIT
>Mature_228_residues
TLNKTDRIVITLGKQIVSGKYVPGSALPAEADLCEEFETSRNIIREVFRSLMAKRLIEMKRYRGAFIAPRNQWNYLDTDV
LQWVLENDYDPRLISAMSEIRNLVEPAIARWAAERATSSDLAEIESALNDMIANNQDREAFNEADIRYHEAVLQSVHNPV
LQQLNVAISSLQRAVFERTWMGDAANMPKTLQEHKALFDAIRHQDGDAAEQAALTMIASSTRRLKEIT

Specific function: Repressor for the dgoRKAT operon. Binds D-galactonate as an inducer [H]

COG id: COG2186

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI48994955, Length=229, Percent_Identity=94.7598253275109, Blast_Score=453, Evalue=1e-129,
Organism=Escherichia coli, GI48994961, Length=213, Percent_Identity=29.5774647887324, Blast_Score=105, Evalue=2e-24,
Organism=Escherichia coli, GI1790780, Length=235, Percent_Identity=26.3829787234043, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1790032, Length=213, Percent_Identity=28.169014084507, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI1789353, Length=223, Percent_Identity=26.0089686098655, Blast_Score=61, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 26018; Mature: 25887

Theoretical pI: Translated: 5.18; Mature: 5.18

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLNKTDRIVITLGKQIVSGKYVPGSALPAEADLCEEFETSRNIIREVFRSLMAKRLIEM
CCCCCCCEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KRYRGAFIAPRNQWNYLDTDVLQWVLENDYDPRLISAMSEIRNLVEPAIARWAAERATSS
HHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
DLAEIESALNDMIANNQDREAFNEADIRYHEAVLQSVHNPVLQQLNVAISSLQRAVFERT
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WMGDAANMPKTLQEHKALFDAIRHQDGDAAEQAALTMIASSTRRLKEIT
HCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TLNKTDRIVITLGKQIVSGKYVPGSALPAEADLCEEFETSRNIIREVFRSLMAKRLIEM
CCCCCCEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KRYRGAFIAPRNQWNYLDTDVLQWVLENDYDPRLISAMSEIRNLVEPAIARWAAERATSS
HHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
DLAEIESALNDMIANNQDREAFNEADIRYHEAVLQSVHNPVLQQLNVAISSLQRAVFERT
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WMGDAANMPKTLQEHKALFDAIRHQDGDAAEQAALTMIASSTRRLKEIT
HCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7686882; 9278503 [H]