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The map label for this gene is yhjV [H]

Identifier: 16766912

GI number: 16766912

Start: 3808931

End: 3810229

Strand: Direct

Name: yhjV [H]

Synonym: STM3625

Alternate gene names: 16766912

Gene position: 3808931-3810229 (Clockwise)

Preceding gene: 16766911

Following gene: 16766920

Centisome position: 78.41

GC content: 43.88

Gene sequence:

>1299_bases
ATGCAGGACGACACATTACCATTAAATAACAGTAACGCTACGACCACACCGCTTTCAACGAGATTACCGTTTACAAAATA
TGATTTTGGCTGGGTGCTCTTGTGTATCGGAATGGCGATCGGCGCCGGTACCGTCTTAATGCCAGTGCAAATCGGTCTCA
AGGGGATCTGGGTATTTATTACCGCTTTTATCATCGCCTATCCCGCTACCTATATTGTGCAGGATATTTATCTAAAAACG
TTATCTGAAAGCGAAACCTGTGACGATTATACGGATATTATCAGTCACTATCTTGGCAAAAACTGGGGCATTTTTCTCGG
TGTAATCTATTTTCTTATGATTATCCACGGGGTGTTTATTTATTCCCTGTCGGTGGTGTTTGATAGCGCCTCCTATATCA
AAACCTTCGGCCTTACTGAGGCCGATCTTTCGCAGTCTATTATCTATAAAGTCGCGATTTTCGCCGTGCTGGTGGCGATT
GCCTCCGGCGGGGAAAAGTTATTATTTAAAATTTCCGGCCCGATGGTGGTGGTAAAAGTCGGGATCATTCTGATATTCGG
TTTCGCGATGATCCCACACTGGAATCTTGATAATATTTCCGCCTTTCCCGCCGCATCGGTTTTCTTTCGCGACGTACTGC
TCACTATCCCATTTTGCTTCTTTTCTGCGGTCTTCATTCAGGTGCTAAACCCAATGAACATCGCCTATCGTAAGCGCGAA
CCTGACCGTGTGCTGGCCACCCGGATGGCGATTCGCACGCATCGCATTAGCTATATTACGCTGATTGCCATTATTCTCTT
TTTCTCGTTCTCGTTTACCTTTTCGATTAGTCATGAAGAGGCGGTATCAGCATTCGAGCAGAATATTTCCGCCCTTGCGC
TGGCAGCTCAGGTAATCCCTGGCCATATCATCCACATTACCTCTACCATCCTCAATATTTTTGCCGTACTTACCGCGTTC
TTTGGTATTTATTTAGGTTTTCACGAAGCGCTTAAAGGTATTGTACTGAATGTATTGAGTCGTATTATGGATGTCAAAAA
CGTCAACCCACTGTTACTGACATCTGGAATCTGTGTCTTTATCGTGGTTACTCTGGTTATTTGGGTTTCGTTTCGCGTCT
CAGTATTGGTCTTTTTCCAGTTAGGCAGTCCGCTTTATGGCATTGTCGCGTGTATTATTCCCTTTTTCCTGATTTATAAA
GTAGCGCAACTGGAAAAATTACGCGGCCTGAAAACCTGGCTTATTCTGTTATATGGAATATTGTTGTGCCTGTCGCCGTT
ATTAAAATTGATTGAATAA

Upstream 100 bases:

>100_bases
GCTGTCACCGGTTTGCCGCATCGGGTATCAAGGCACTATAGCCTGGTTATAGGCAGCATTCTTTATGAGAGAGCTGCGTA
TATTTTGGGCAGGGGGCTCT

Downstream 100 bases:

>100_bases
GTCGTACCGGAGAGCCATGCCCGGTGGCGCTACGCTTACCAGGCCTACAGGTACGGTGTAGGCTTGATAAGGCGCAGCCG
CCATCCGGCATAAAACGCAA

Product: transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 432; Mature: 432

Protein sequence:

>432_residues
MQDDTLPLNNSNATTTPLSTRLPFTKYDFGWVLLCIGMAIGAGTVLMPVQIGLKGIWVFITAFIIAYPATYIVQDIYLKT
LSESETCDDYTDIISHYLGKNWGIFLGVIYFLMIIHGVFIYSLSVVFDSASYIKTFGLTEADLSQSIIYKVAIFAVLVAI
ASGGEKLLFKISGPMVVVKVGIILIFGFAMIPHWNLDNISAFPAASVFFRDVLLTIPFCFFSAVFIQVLNPMNIAYRKRE
PDRVLATRMAIRTHRISYITLIAIILFFSFSFTFSISHEEAVSAFEQNISALALAAQVIPGHIIHITSTILNIFAVLTAF
FGIYLGFHEALKGIVLNVLSRIMDVKNVNPLLLTSGICVFIVVTLVIWVSFRVSVLVFFQLGSPLYGIVACIIPFFLIYK
VAQLEKLRGLKTWLILLYGILLCLSPLLKLIE

Sequences:

>Translated_432_residues
MQDDTLPLNNSNATTTPLSTRLPFTKYDFGWVLLCIGMAIGAGTVLMPVQIGLKGIWVFITAFIIAYPATYIVQDIYLKT
LSESETCDDYTDIISHYLGKNWGIFLGVIYFLMIIHGVFIYSLSVVFDSASYIKTFGLTEADLSQSIIYKVAIFAVLVAI
ASGGEKLLFKISGPMVVVKVGIILIFGFAMIPHWNLDNISAFPAASVFFRDVLLTIPFCFFSAVFIQVLNPMNIAYRKRE
PDRVLATRMAIRTHRISYITLIAIILFFSFSFTFSISHEEAVSAFEQNISALALAAQVIPGHIIHITSTILNIFAVLTAF
FGIYLGFHEALKGIVLNVLSRIMDVKNVNPLLLTSGICVFIVVTLVIWVSFRVSVLVFFQLGSPLYGIVACIIPFFLIYK
VAQLEKLRGLKTWLILLYGILLCLSPLLKLIE
>Mature_432_residues
MQDDTLPLNNSNATTTPLSTRLPFTKYDFGWVLLCIGMAIGAGTVLMPVQIGLKGIWVFITAFIIAYPATYIVQDIYLKT
LSESETCDDYTDIISHYLGKNWGIFLGVIYFLMIIHGVFIYSLSVVFDSASYIKTFGLTEADLSQSIIYKVAIFAVLVAI
ASGGEKLLFKISGPMVVVKVGIILIFGFAMIPHWNLDNISAFPAASVFFRDVLLTIPFCFFSAVFIQVLNPMNIAYRKRE
PDRVLATRMAIRTHRISYITLIAIILFFSFSFTFSISHEEAVSAFEQNISALALAAQVIPGHIIHITSTILNIFAVLTAF
FGIYLGFHEALKGIVLNVLSRIMDVKNVNPLLLTSGICVFIVVTLVIWVSFRVSVLVFFQLGSPLYGIVACIIPFFLIYK
VAQLEKLRGLKTWLILLYGILLCLSPLLKLIE

Specific function: Unknown

COG id: COG0814

COG function: function code E; Amino acid permeases

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the amino acid/polyamine transporter 2 family. SdaC/TdcC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789961, Length=432, Percent_Identity=85.8796296296296, Blast_Score=718, Evalue=0.0,
Organism=Escherichia coli, GI145693183, Length=429, Percent_Identity=44.7552447552448, Blast_Score=390, Evalue=1e-109,
Organism=Escherichia coli, GI1789160, Length=415, Percent_Identity=24.578313253012, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI1789504, Length=449, Percent_Identity=23.8307349665924, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1789211, Length=417, Percent_Identity=22.5419664268585, Blast_Score=83, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004694
- InterPro:   IPR018227 [H]

Pfam domain/function: PF03222 Trp_Tyr_perm [H]

EC number: NA

Molecular weight: Translated: 48099; Mature: 48099

Theoretical pI: Translated: 8.34; Mature: 8.34

Prosite motif: PS00307 LECTIN_LEGUME_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHC
>Mature Secondary Structure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HHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]