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The map label for this gene is yhjC [H]

Identifier: 16766893

GI number: 16766893

Start: 3780701

End: 3781600

Strand: Direct

Name: yhjC [H]

Synonym: STM3607

Alternate gene names: 16766893

Gene position: 3780701-3781600 (Clockwise)

Preceding gene: 16766891

Following gene: 16766894

Centisome position: 77.83

GC content: 53.56

Gene sequence:

>900_bases
ATGGATAAAATATATGCAATGAAATTGTTTGTACGCGTGGCGGAACGGGAAAGTTTTTCCCGTGCAGCAGAGGATATCGG
CCTTCCCAAAGGCAGCGTCTCACGGCAAATACAAGCGTTAGAACATCAACTGGGCATCCGCCTGCTCCACCGCACCACCC
GGCGGGTACAGCTTACTCAGGACGGAATGGTTTACTACGAACGGGCAAAAGATCTGTTGAGTAACCTGGATGAACTGGAG
GGTCTTTTCCAGCCTGATCCCGCCAGTATCAGTGGCAAAATACGGGTAGATATACCGCCATGTCTCGCAAACAGCCTCAT
CATGCCGCGCCTGCCCACTTTTTTGCATCAGTATCCCGGCATTGCGCTGGAACTTTGTAGTAGCGATCGACAGGTCGATT
TACTACGGGAAGATTTCGACTGCGTGGTGCGCACAGAGCCGCTACATGCGCCAGGGATACTGACGCGCCCACTTGGCAAA
CTGAGGAGGGTGAACTGCGCCAGCCCACAATACCTGGCACGCTTTGGGTATCCAGAAAACCTTGACGATCTCGCCTCACA
TGCGATGGTGCATTATTCATTGACCCCGGGAGTCTCTTCACCGGGTTTTGCCTTTGAAACTCCCCACGGTATGCAGTGGG
TAAAAACCGGCGGAATGCTAACGGTAAACAGTACAGAGACCTGGCATACGGCCTGTCTGGCAGGATTAGGAATCATTCAG
ACGCCGCGCATTGCTGTACGGGAGGCGTTACGCGCCGGAACGCTCATTGAAATTTTACCGCAATATCGCGCCGCTCCACT
GCCGGTGACGCTGCATTATCCCCATCGCCGTAATCTTTCCCGCCGGGTACACCTGTTTATGGTATGGCTGACGGAAACCA
TTAAAGAGGCCGCAGAGTAG

Upstream 100 bases:

>100_bases
CGAGCAATGATTGCGAAAGGGCTTATTAGGTGCTAGAAAATCAATAAAACCAGCCGCTTCAGCGTCACTGTTTCAATAAG
AACAATAATAGAGCCTGATG

Downstream 100 bases:

>100_bases
CCGCATTTTCAGCATCCACCGGGGAGAAGCTATACTGACATATTCTATTAATGATGAAGGACTACCGACCTGATGACGCA
GGAAAATGACGTAAAACGCC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MDKIYAMKLFVRVAERESFSRAAEDIGLPKGSVSRQIQALEHQLGIRLLHRTTRRVQLTQDGMVYYERAKDLLSNLDELE
GLFQPDPASISGKIRVDIPPCLANSLIMPRLPTFLHQYPGIALELCSSDRQVDLLREDFDCVVRTEPLHAPGILTRPLGK
LRRVNCASPQYLARFGYPENLDDLASHAMVHYSLTPGVSSPGFAFETPHGMQWVKTGGMLTVNSTETWHTACLAGLGIIQ
TPRIAVREALRAGTLIEILPQYRAAPLPVTLHYPHRRNLSRRVHLFMVWLTETIKEAAE

Sequences:

>Translated_299_residues
MDKIYAMKLFVRVAERESFSRAAEDIGLPKGSVSRQIQALEHQLGIRLLHRTTRRVQLTQDGMVYYERAKDLLSNLDELE
GLFQPDPASISGKIRVDIPPCLANSLIMPRLPTFLHQYPGIALELCSSDRQVDLLREDFDCVVRTEPLHAPGILTRPLGK
LRRVNCASPQYLARFGYPENLDDLASHAMVHYSLTPGVSSPGFAFETPHGMQWVKTGGMLTVNSTETWHTACLAGLGIIQ
TPRIAVREALRAGTLIEILPQYRAAPLPVTLHYPHRRNLSRRVHLFMVWLTETIKEAAE
>Mature_299_residues
MDKIYAMKLFVRVAERESFSRAAEDIGLPKGSVSRQIQALEHQLGIRLLHRTTRRVQLTQDGMVYYERAKDLLSNLDELE
GLFQPDPASISGKIRVDIPPCLANSLIMPRLPTFLHQYPGIALELCSSDRQVDLLREDFDCVVRTEPLHAPGILTRPLGK
LRRVNCASPQYLARFGYPENLDDLASHAMVHYSLTPGVSSPGFAFETPHGMQWVKTGGMLTVNSTETWHTACLAGLGIIQ
TPRIAVREALRAGTLIEILPQYRAAPLPVTLHYPHRRNLSRRVHLFMVWLTETIKEAAE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=296, Percent_Identity=66.2162162162162, Blast_Score=398, Evalue=1e-112,
Organism=Escherichia coli, GI1786401, Length=292, Percent_Identity=31.1643835616438, Blast_Score=149, Evalue=3e-37,
Organism=Escherichia coli, GI1789639, Length=301, Percent_Identity=28.5714285714286, Blast_Score=136, Evalue=1e-33,
Organism=Escherichia coli, GI87081978, Length=300, Percent_Identity=30, Blast_Score=122, Evalue=3e-29,
Organism=Escherichia coli, GI1789440, Length=281, Percent_Identity=28.4697508896797, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1787128, Length=286, Percent_Identity=27.6223776223776, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1787589, Length=287, Percent_Identity=26.1324041811847, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1789173, Length=186, Percent_Identity=32.258064516129, Blast_Score=94, Evalue=9e-21,
Organism=Escherichia coli, GI1788706, Length=300, Percent_Identity=22.3333333333333, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI157672245, Length=155, Percent_Identity=30.3225806451613, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1788481, Length=267, Percent_Identity=27.3408239700375, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1786448, Length=176, Percent_Identity=28.9772727272727, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1790783, Length=257, Percent_Identity=26.4591439688716, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1788748, Length=169, Percent_Identity=36.6863905325444, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1790399, Length=145, Percent_Identity=29.6551724137931, Blast_Score=65, Evalue=7e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33653; Mature: 33653

Theoretical pI: Translated: 8.48; Mature: 8.48

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKIYAMKLFVRVAERESFSRAAEDIGLPKGSVSRQIQALEHQLGIRLLHRTTRRVQLTQ
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEECC
DGMVYYERAKDLLSNLDELEGLFQPDPASISGKIRVDIPPCLANSLIMPRLPTFLHQYPG
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCHHHHCCCHHHHHHHHHHHCCC
IALELCSSDRQVDLLREDFDCVVRTEPLHAPGILTRPLGKLRRVNCASPQYLARFGYPEN
CEEEECCCCCHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCHHHHHHCCCCCC
LDDLASHAMVHYSLTPGVSSPGFAFETPHGMQWVKTGGMLTVNSTETWHTACLAGLGIIQ
HHHHHHHHEEEEEECCCCCCCCCEEECCCCCEEEECCCEEEECCCCHHHHHHHHCCCCCC
TPRIAVREALRAGTLIEILPQYRAAPLPVTLHYPHRRNLSRRVHLFMVWLTETIKEAAE
CCHHHHHHHHHHCHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDKIYAMKLFVRVAERESFSRAAEDIGLPKGSVSRQIQALEHQLGIRLLHRTTRRVQLTQ
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEECC
DGMVYYERAKDLLSNLDELEGLFQPDPASISGKIRVDIPPCLANSLIMPRLPTFLHQYPG
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCHHHHCCCHHHHHHHHHHHCCC
IALELCSSDRQVDLLREDFDCVVRTEPLHAPGILTRPLGKLRRVNCASPQYLARFGYPEN
CEEEECCCCCHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCHHHHHHCCCCCC
LDDLASHAMVHYSLTPGVSSPGFAFETPHGMQWVKTGGMLTVNSTETWHTACLAGLGIIQ
HHHHHHHHEEEEEECCCCCCCCCEEECCCCCEEEECCCEEEECCCCHHHHHHHHCCCCCC
TPRIAVREALRAGTLIEILPQYRAAPLPVTLHYPHRRNLSRRVHLFMVWLTETIKEAAE
CCHHHHHHHHHHCHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]