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The map label for this gene is yrfD [H]

Identifier: 16766780

GI number: 16766780

Start: 3645753

End: 3646532

Strand: Reverse

Name: yrfD [H]

Synonym: STM3492

Alternate gene names: 16766780

Gene position: 3646532-3645753 (Counterclockwise)

Preceding gene: 39546368

Following gene: 16766779

Centisome position: 75.07

GC content: 58.21

Gene sequence:

>780_bases
ATGGCTTTTAAAACCTGGCAAATAGGATTGCATATTCAGCAGCATGAAGCGCTGGCCATCGCCGTTATTCACGGCGCATC
GGGCTGGTCTCTGCAACGTTGGTGGCGACTGCCGCTGATGAACGCCTCCACGGCAGAGGGTACGATTCCTGACCCGCAAT
CGCTGGCTCACGTACTGCGACCCTGGAGCCGCGAGCTGCCGCTACGTCACCGTATTTATCTCTCTTTTCCCGCAAATCGG
ACATTGCAACGCGCTTTTCCACATCCGCCGATGCGTCTGCGGGAACGTGAGCAAGTCGCATGGCTTTCACAAACGATGGC
GCGTGAGCTGGATATGGATCCGGACTTATTGCGTTTCGACTTTCAGGACGATGCGCTAAGCCCTGCGTTCAACGTTACCG
CCGTGCAAAGCAAAGAAATTTCAGAGCTGTTAACGCTGGCGCAAACGCTCAATGTGCGCATCGCTGCTGTAACGCCCGAT
GCCTGCGCGTTACAGCGCTTGCTGCCGTTTATACCTTCGGGGCGGCAATGTCTGGTCTGGCGCGATGAGAGCCAGTGGCT
GTGGGCGACGCGCTATGCGTGGGGACGTAAATCGGCGCGAGAGGCGATGACGCTGCATGACCTTGCCGCGACGTTATCCG
TCGTGCCGGAACATATTTCGTTATGCGCCGAAGGCGAATTCGACCCCTGGCACGCCGTTACCGTCCGCCAACCGCCGGTT
CCGCCGGACGGTTATCGCTTTGCGATTGCGCTGGGTTTAGCCATGGGGGAGATACGCTGA

Upstream 100 bases:

>100_bases
TCATTTGGGCAGTTTATAAACAAACGCGCGGTAGTATAAAGGCAAGCCAGACGCATTGATATACCCGTTAACGCGACGGG
TGATAAGGAGATCGACCGTT

Downstream 100 bases:

>100_bases
TGGCGCATTCTGTCAATTTGCTCCCCTGGCGGCGCCAACATTACGTAGCGCGTCTGCGGCTGTGGTGCGTGGTATGGGGC
GCGTCCCTGCTGCTGATAGC

Product: periplasmic protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 258

Protein sequence:

>259_residues
MAFKTWQIGLHIQQHEALAIAVIHGASGWSLQRWWRLPLMNASTAEGTIPDPQSLAHVLRPWSRELPLRHRIYLSFPANR
TLQRAFPHPPMRLREREQVAWLSQTMARELDMDPDLLRFDFQDDALSPAFNVTAVQSKEISELLTLAQTLNVRIAAVTPD
ACALQRLLPFIPSGRQCLVWRDESQWLWATRYAWGRKSAREAMTLHDLAATLSVVPEHISLCAEGEFDPWHAVTVRQPPV
PPDGYRFAIALGLAMGEIR

Sequences:

>Translated_259_residues
MAFKTWQIGLHIQQHEALAIAVIHGASGWSLQRWWRLPLMNASTAEGTIPDPQSLAHVLRPWSRELPLRHRIYLSFPANR
TLQRAFPHPPMRLREREQVAWLSQTMARELDMDPDLLRFDFQDDALSPAFNVTAVQSKEISELLTLAQTLNVRIAAVTPD
ACALQRLLPFIPSGRQCLVWRDESQWLWATRYAWGRKSAREAMTLHDLAATLSVVPEHISLCAEGEFDPWHAVTVRQPPV
PPDGYRFAIALGLAMGEIR
>Mature_258_residues
AFKTWQIGLHIQQHEALAIAVIHGASGWSLQRWWRLPLMNASTAEGTIPDPQSLAHVLRPWSRELPLRHRIYLSFPANRT
LQRAFPHPPMRLREREQVAWLSQTMARELDMDPDLLRFDFQDDALSPAFNVTAVQSKEISELLTLAQTLNVRIAAVTPDA
CALQRLLPFIPSGRQCLVWRDESQWLWATRYAWGRKSAREAMTLHDLAATLSVVPEHISLCAEGEFDPWHAVTVRQPPVP
PDGYRFAIALGLAMGEIR

Specific function: Required for the use of extracellular DNA as a nutrient [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082257, Length=257, Percent_Identity=65.7587548638132, Blast_Score=350, Evalue=4e-98,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29491; Mature: 29360

Theoretical pI: Translated: 7.70; Mature: 7.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFKTWQIGLHIQQHEALAIAVIHGASGWSLQRWWRLPLMNASTAEGTIPDPQSLAHVLR
CCEEEEEEEEEEECCCEEEEEEEECCCCCCHHHHEECCCCCCCCCCCCCCCHHHHHHHHC
PWSRELPLRHRIYLSFPANRTLQRAFPHPPMRLREREQVAWLSQTMARELDMDPDLLRFD
CHHHCCCCEEEEEEECCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE
FQDDALSPAFNVTAVQSKEISELLTLAQTLNVRIAAVTPDACALQRLLPFIPSGRQCLVW
CCCCCCCCCEEEEEECHHHHHHHHHHHHHHCEEEEEECCCHHHHHHHHHCCCCCCEEEEE
RDESQWLWATRYAWGRKSAREAMTLHDLAATLSVVPEHISLCAEGEFDPWHAVTVRQPPV
ECCCCEEEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCCC
PPDGYRFAIALGLAMGEIR
CCCCCEEEEEEEHHHHCCC
>Mature Secondary Structure 
AFKTWQIGLHIQQHEALAIAVIHGASGWSLQRWWRLPLMNASTAEGTIPDPQSLAHVLR
CEEEEEEEEEEECCCEEEEEEEECCCCCCHHHHEECCCCCCCCCCCCCCCHHHHHHHHC
PWSRELPLRHRIYLSFPANRTLQRAFPHPPMRLREREQVAWLSQTMARELDMDPDLLRFD
CHHHCCCCEEEEEEECCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE
FQDDALSPAFNVTAVQSKEISELLTLAQTLNVRIAAVTPDACALQRLLPFIPSGRQCLVW
CCCCCCCCCEEEEEECHHHHHHHHHHHHHHCEEEEEECCCHHHHHHHHHCCCCCCEEEEE
RDESQWLWATRYAWGRKSAREAMTLHDLAATLSVVPEHISLCAEGEFDPWHAVTVRQPPV
ECCCCEEEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCCC
PPDGYRFAIALGLAMGEIR
CCCCCEEEEEEEHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]