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The map label for this gene is yrfB [H]

Identifier: 16766778

GI number: 16766778

Start: 3644757

End: 3645230

Strand: Reverse

Name: yrfB [H]

Synonym: STM3490

Alternate gene names: 16766778

Gene position: 3645230-3644757 (Counterclockwise)

Preceding gene: 16766779

Following gene: 16766777

Centisome position: 75.04

GC content: 59.28

Gene sequence:

>474_bases
GTGAACGCGCTCTTTGATATCTGGTACGGGATGTCGCGCCGTGGTCGGGTTTTTTATTGGTGTGCAGGCGTGCTGTGCCT
GACGCTGACGGTTGCGTTATCTGTGGGCTATCCCGGCTGGAAAACGTTGGATACGCAACAAACGCGGTTAAGCCAGCAGC
GCGAGGCCGCCCGGCAACAGTGGCGTCATCTGCGCCGTCTGAGCGTCGCGGCTGAACCGCTTTTCGGGCGCACAGTGGAA
AATCCGCGTCCTTTTTCGCCGTTAGATTTCCAGGCGCCTCCCCTGCGTTTGCTGCACTGGCAGCCATCGGCGCAGGGGGG
AGAAATGGCGCTGAAAACGTCCTGGGATGCGGTGCCGTCGCTGTTTGTCCGGTTGGCCGAAAGCGAGATGAGCGTAAGTC
GGTTTTCATTGCGTAAAGAGGGGGCGGAATTATTGATGACGCTGCAACTGGAGCGCCTGGCGAATGAAGGCTAG

Upstream 100 bases:

>100_bases
CGTCACTATGTCAGTTTTCCGCTAAACCGCACGGGCGCCACGCGGCAGGATGCGCAAGGGCGCTGGCAGTTCCATTATCA
GTTAACGAGGAGCGCCGCCC

Downstream 100 bases:

>100_bases
CCGCAGTGTATTGCTCTGTTTTTGTTTGCTGATGTTGACAGGAATGCGCGATCCCTTCCGCCCGCCGGAAGATCGCTGCC
GGATAGCGGAACTCTCGCAG

Product: inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 157; Mature: 157

Protein sequence:

>157_residues
MNALFDIWYGMSRRGRVFYWCAGVLCLTLTVALSVGYPGWKTLDTQQTRLSQQREAARQQWRHLRRLSVAAEPLFGRTVE
NPRPFSPLDFQAPPLRLLHWQPSAQGGEMALKTSWDAVPSLFVRLAESEMSVSRFSLRKEGAELLMTLQLERLANEG

Sequences:

>Translated_157_residues
MNALFDIWYGMSRRGRVFYWCAGVLCLTLTVALSVGYPGWKTLDTQQTRLSQQREAARQQWRHLRRLSVAAEPLFGRTVE
NPRPFSPLDFQAPPLRLLHWQPSAQGGEMALKTSWDAVPSLFVRLAESEMSVSRFSLRKEGAELLMTLQLERLANEG
>Mature_157_residues
MNALFDIWYGMSRRGRVFYWCAGVLCLTLTVALSVGYPGWKTLDTQQTRLSQQREAARQQWRHLRRLSVAAEPLFGRTVE
NPRPFSPLDFQAPPLRLLHWQPSAQGGEMALKTSWDAVPSLFVRLAESEMSVSRFSLRKEGAELLMTLQLERLANEG

Specific function: Required for the use of extracellular DNA as a nutrient [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789795, Length=151, Percent_Identity=47.682119205298, Blast_Score=115, Evalue=2e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17952; Mature: 17952

Theoretical pI: Translated: 10.11; Mature: 10.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNALFDIWYGMSRRGRVFYWCAGVLCLTLTVALSVGYPGWKTLDTQQTRLSQQREAARQQ
CCCHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
WRHLRRLSVAAEPLFGRTVENPRPFSPLDFQAPPLRLLHWQPSAQGGEMALKTSWDAVPS
HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEECCHHHHHH
LFVRLAESEMSVSRFSLRKEGAELLMTLQLERLANEG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNALFDIWYGMSRRGRVFYWCAGVLCLTLTVALSVGYPGWKTLDTQQTRLSQQREAARQQ
CCCHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
WRHLRRLSVAAEPLFGRTVENPRPFSPLDFQAPPLRLLHWQPSAQGGEMALKTSWDAVPS
HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEECCHHHHHH
LFVRLAESEMSVSRFSLRKEGAELLMTLQLERLANEG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]