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The map label for this gene is yrfA [H]

Identifier: 16766777

GI number: 16766777

Start: 3644366

End: 3644767

Strand: Reverse

Name: yrfA [H]

Synonym: STM3489

Alternate gene names: 16766777

Gene position: 3644767-3644366 (Counterclockwise)

Preceding gene: 16766778

Following gene: 16766776

Centisome position: 75.03

GC content: 56.72

Gene sequence:

>402_bases
ATGAAGGCTAGCCGCAGTGTATTGCTCTGTTTTTGTTTGCTGATGTTGACAGGAATGCGCGATCCCTTCCGCCCGCCGGA
AGATCGCTGCCGGATAGCGGAACTCTCGCAGTGGCGGTATCAGGGCGCGGTGCGTAAAGGCGAGCGATGGACAGGCATTC
TTAAAGACAGTCAGCAAAAATGGCGACGAGTGGAAGAAGGGCAGACGCTGGAAAACGGTTGGACGATTGTCCGCCTGACG
GCGGAAACCTTAACGTTAACGACCGGTAAAAATTGTGCGCCGCCGCAGTGGCGGTGGCTACGTCAGGGAGCGGACAATGA
AGCGATGGATAGCCATAATACTGATAGCCTTGATGCCCGCCGCGCAGGCGGGAAAAGCGGCGAAAGTGACGCTGGTGGTT
GA

Upstream 100 bases:

>100_bases
TTTGTCCGGTTGGCCGAAAGCGAGATGAGCGTAAGTCGGTTTTCATTGCGTAAAGAGGGGGCGGAATTATTGATGACGCT
GCAACTGGAGCGCCTGGCGA

Downstream 100 bases:

>100_bases
TGACGTCCCTGTGGTGCAGGTTTTGCAGACTTTAGCCGAGCAGGAGCGGCAGAATCTGGTGGTGTCGCCGGACGTCAGCG
GGACATTATCGCTACATCTG

Product: inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 133; Mature: 133

Protein sequence:

>133_residues
MKASRSVLLCFCLLMLTGMRDPFRPPEDRCRIAELSQWRYQGAVRKGERWTGILKDSQQKWRRVEEGQTLENGWTIVRLT
AETLTLTTGKNCAPPQWRWLRQGADNEAMDSHNTDSLDARRAGGKSGESDAGG

Sequences:

>Translated_133_residues
MKASRSVLLCFCLLMLTGMRDPFRPPEDRCRIAELSQWRYQGAVRKGERWTGILKDSQQKWRRVEEGQTLENGWTIVRLT
AETLTLTTGKNCAPPQWRWLRQGADNEAMDSHNTDSLDARRAGGKSGESDAGG
>Mature_133_residues
MKASRSVLLCFCLLMLTGMRDPFRPPEDRCRIAELSQWRYQGAVRKGERWTGILKDSQQKWRRVEEGQTLENGWTIVRLT
AETLTLTTGKNCAPPQWRWLRQGADNEAMDSHNTDSLDARRAGGKSGESDAGG

Specific function: Required for the use of extracellular DNA as a nutrient [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082256, Length=133, Percent_Identity=61.6541353383459, Blast_Score=172, Evalue=6e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019684 [H]

Pfam domain/function: PF10748 DUF2531 [H]

EC number: NA

Molecular weight: Translated: 15068; Mature: 15068

Theoretical pI: Translated: 9.03; Mature: 9.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKASRSVLLCFCLLMLTGMRDPFRPPEDRCRIAELSQWRYQGAVRKGERWTGILKDSQQK
CCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
WRRVEEGQTLENGWTIVRLTAETLTLTTGKNCAPPQWRWLRQGADNEAMDSHNTDSLDAR
HHHHHCCCCCCCCEEEEEEEECEEEEECCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHH
RAGGKSGESDAGG
HCCCCCCCCCCCC
>Mature Secondary Structure
MKASRSVLLCFCLLMLTGMRDPFRPPEDRCRIAELSQWRYQGAVRKGERWTGILKDSQQK
CCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
WRRVEEGQTLENGWTIVRLTAETLTLTTGKNCAPPQWRWLRQGADNEAMDSHNTDSLDAR
HHHHHCCCCCCCCEEEEEEEECEEEEECCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHH
RAGGKSGESDAGG
HCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]