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The map label for this gene is hofQ [H]

Identifier: 16766776

GI number: 16766776

Start: 3643213

End: 3644451

Strand: Reverse

Name: hofQ [H]

Synonym: STM3488

Alternate gene names: 16766776

Gene position: 3644451-3643213 (Counterclockwise)

Preceding gene: 16766777

Following gene: 16766775

Centisome position: 75.03

GC content: 56.34

Gene sequence:

>1239_bases
ATGAAGCGATGGATAGCCATAATACTGATAGCCTTGATGCCCGCCGCGCAGGCGGGAAAAGCGGCGAAAGTGACGCTGGT
GGTTGATGACGTCCCTGTGGTGCAGGTTTTGCAGACTTTAGCCGAGCAGGAGCGGCAGAATCTGGTGGTGTCGCCGGACG
TCAGCGGGACATTATCGCTACATCTGACGGATGTGCCGTGGAAACAGGCGCTACAGACGGTGGTCAATAGCGCGGGGCTG
GTGCTACGTCAGGAGGGGAATATTCTCCATGTTCATTCACAGGCCTGGCAGAAAGAACACAGTGCGCGGCAGGATGCCGA
GCGGTTAAGGTTTCAGGCTAATTTACCGCTGGAAAACCGCAGCATTAGCCTGCAATACGCCGATGCCGGCGAACTGGCGA
AAGCGGGCGAGAAACTCCTGAGCGCGAAGGGAACCATCATGGTAGATAAGCGCACCAACCGCCTGCTGTTGCGCGATAAC
CGCGCGGCCTTGGCGGAGCTGGAAAAATGGGTATCGCAAATGGATCTGCCGGTGGCGCAGGTGGAGCTGGCGGCGCATAT
CGTTACCATTAACGAAAAGAGTCTACGGGAACTGGGCGTAAAGTGGACGCTGGCTGACGCGACGCAAGCGGGCTCGGTGG
GTGACGTGACGACGCTTTCCAGTGATTTATCTGTCGCCGCCGCCACCTCACGCGTCGGGTTTAACATCGGGCGCATTAAC
GGACGCTTGCTGGATCTGGAGCTGTCAGCGCTGGAACAAAAGCAGCTGTTGGATATTATCGCCAGCCCCCGGCTGCTGGC
TTCGCATCTACAGCCAGCCAGTATCAAGCAAGGCAGCGAAATTCCTTATCAGGTTTCCAGCGGCGAAAGCGGCGCGACCT
CCGTGGAATTTAAAGAAGCGGTACTGGGAATGGAGGTGACGCCCACCGTTTTGCAAAAAGGGCGCATCCGCCTGAAGTTA
CATATCAGCCAGAATGTTCCCGGTCAGGTACTACAACAGGCTGACGGCGAAGTGCTGGCGATAGATAAACAGGAAATTGA
AACGCAGGTAGAGGTAAAAAGCGGCGAGACGCTGGCGCTGGGCGGTATTTTTTCGCGAAAAAATAAATCGGGTAGCGATA
GCGTGCCGCTGTTGGGGGATATTCCCTGGCTTGGTCAGCTCTTCCGCCATGACGGTAAAGAGGACGAGCGACGCGAATTA
GTGGTGTTTATCACCCCCAGACTGGTGGCGACAGAATAA

Upstream 100 bases:

>100_bases
GGTTGGACGATTGTCCGCCTGACGGCGGAAACCTTAACGTTAACGACCGGTAAAAATTGTGCGCCGCCGCAGTGGCGGTG
GCTACGTCAGGGAGCGGACA

Downstream 100 bases:

>100_bases
TTTATGCATAAAAAAGCGCTGTTTTTGCACTGAACGCATCTGCGGGATTTGACGTGCGGATGTATTTAGCATACAAGGAG
TACCGATTTGAGAGTCGTGC

Product: outer membrane porin HofQ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 412; Mature: 412

Protein sequence:

>412_residues
MKRWIAIILIALMPAAQAGKAAKVTLVVDDVPVVQVLQTLAEQERQNLVVSPDVSGTLSLHLTDVPWKQALQTVVNSAGL
VLRQEGNILHVHSQAWQKEHSARQDAERLRFQANLPLENRSISLQYADAGELAKAGEKLLSAKGTIMVDKRTNRLLLRDN
RAALAELEKWVSQMDLPVAQVELAAHIVTINEKSLRELGVKWTLADATQAGSVGDVTTLSSDLSVAAATSRVGFNIGRIN
GRLLDLELSALEQKQLLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKL
HISQNVPGQVLQQADGEVLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERREL
VVFITPRLVATE

Sequences:

>Translated_412_residues
MKRWIAIILIALMPAAQAGKAAKVTLVVDDVPVVQVLQTLAEQERQNLVVSPDVSGTLSLHLTDVPWKQALQTVVNSAGL
VLRQEGNILHVHSQAWQKEHSARQDAERLRFQANLPLENRSISLQYADAGELAKAGEKLLSAKGTIMVDKRTNRLLLRDN
RAALAELEKWVSQMDLPVAQVELAAHIVTINEKSLRELGVKWTLADATQAGSVGDVTTLSSDLSVAAATSRVGFNIGRIN
GRLLDLELSALEQKQLLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKL
HISQNVPGQVLQQADGEVLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERREL
VVFITPRLVATE
>Mature_412_residues
MKRWIAIILIALMPAAQAGKAAKVTLVVDDVPVVQVLQTLAEQERQNLVVSPDVSGTLSLHLTDVPWKQALQTVVNSAGL
VLRQEGNILHVHSQAWQKEHSARQDAERLRFQANLPLENRSISLQYADAGELAKAGEKLLSAKGTIMVDKRTNRLLLRDN
RAALAELEKWVSQMDLPVAQVELAAHIVTINEKSLRELGVKWTLADATQAGSVGDVTTLSSDLSVAAATSRVGFNIGRIN
GRLLDLELSALEQKQLLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKL
HISQNVPGQVLQQADGEVLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERREL
VVFITPRLVATE

Specific function: Required for the use of extracellular DNA as a nutrient. Could be the porin responsible for transport of DNA across the outer membrane [H]

COG id: COG4796

COG function: function code U; Type II secretory pathway, component HofQ

Gene ontology:

Cell location: Cell outer membrane (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP D family [H]

Homologues:

Organism=Escherichia coli, GI1789793, Length=412, Percent_Identity=86.4077669902913, Blast_Score=716, Evalue=0.0,
Organism=Escherichia coli, GI87082242, Length=329, Percent_Identity=27.9635258358663, Blast_Score=98, Evalue=1e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR005644
- InterPro:   IPR013355
- InterPro:   IPR011662
- InterPro:   IPR004846
- InterPro:   IPR004845
- InterPro:   IPR001814 [H]

Pfam domain/function: PF00263 Secretin; PF03958 Secretin_N; PF07660 STN [H]

EC number: NA

Molecular weight: Translated: 44870; Mature: 44870

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: PS00875 T2SP_D

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRWIAIILIALMPAAQAGKAAKVTLVVDDVPVVQVLQTLAEQERQNLVVSPDVSGTLSL
CHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCEEECCCCCCEEEE
HLTDVPWKQALQTVVNSAGLVLRQEGNILHVHSQAWQKEHSARQDAERLRFQANLPLENR
EEECCCHHHHHHHHHCCCCEEEEECCCEEEEEHHHHHHHHHHHHHHHHHEEEECCCCCCC
SISLQYADAGELAKAGEKLLSAKGTIMVDKRTNRLLLRDNRAALAELEKWVSQMDLPVAQ
EEEEEECCCHHHHHHHHHHHCCCCCEEEECCCCEEEEECCHHHHHHHHHHHHHHCCCHHH
VELAAHIVTINEKSLRELGVKWTLADATQAGSVGDVTTLSSDLSVAAATSRVGFNIGRIN
EEEEEEEEEECHHHHHHCCCEEEEECCCCCCCCCCEEEECCCCEEEEEHHHCCEEEEECC
GRLLDLELSALEQKQLLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGATSVEFKEA
CEEEEEEHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHH
VLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEVKSGETLAL
HHCCCCCHHHHHCCCEEEEEEECCCCCHHHHHHCCCCEEEEEHHHCCEEEEECCCCEEEE
GGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLVATE
ECEEECCCCCCCCCCCCEECCHHHHHHHHCCCCCCCCCEEEEEECCEEEECC
>Mature Secondary Structure
MKRWIAIILIALMPAAQAGKAAKVTLVVDDVPVVQVLQTLAEQERQNLVVSPDVSGTLSL
CHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCEEECCCCCCEEEE
HLTDVPWKQALQTVVNSAGLVLRQEGNILHVHSQAWQKEHSARQDAERLRFQANLPLENR
EEECCCHHHHHHHHHCCCCEEEEECCCEEEEEHHHHHHHHHHHHHHHHHEEEECCCCCCC
SISLQYADAGELAKAGEKLLSAKGTIMVDKRTNRLLLRDNRAALAELEKWVSQMDLPVAQ
EEEEEECCCHHHHHHHHHHHCCCCCEEEECCCCEEEEECCHHHHHHHHHHHHHHCCCHHH
VELAAHIVTINEKSLRELGVKWTLADATQAGSVGDVTTLSSDLSVAAATSRVGFNIGRIN
EEEEEEEEEECHHHHHHCCCEEEEECCCCCCCCCCEEEECCCCEEEEEHHHCCEEEEECC
GRLLDLELSALEQKQLLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGATSVEFKEA
CEEEEEEHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHH
VLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEVKSGETLAL
HHCCCCCHHHHHCCCEEEEEEECCCCCHHHHHHCCCCEEEEEHHHCCEEEEECCCCEEEE
GGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLVATE
ECEEECCCCCCCCCCCCEECCHHHHHHHHCCCCCCCCCEEEEEECCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1309529; 9278503; 7901733 [H]