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The map label for this gene is yrdC [H]

Identifier: 16766691

GI number: 16766691

Start: 3574089

End: 3574661

Strand: Reverse

Name: yrdC [H]

Synonym: STM3402

Alternate gene names: 16766691

Gene position: 3574661-3574089 (Counterclockwise)

Preceding gene: 16766692

Following gene: 16766690

Centisome position: 73.59

GC content: 53.58

Gene sequence:

>573_bases
GTGAATAATAACCTGCCAATAGGATCTATCGCCGCAGCGGTAGATCTCCTGAATAAAGAAAATGTCATCGCTTATCCAAC
AGAAGCCGTTTTCGGCGTCGGCTGCGATCCCGATAGTGAAACAGCCGTTACGCGCCTGCTGGCGTTAAAACAACGGCCCG
TCGATAAGGGACTCATTTTGATTGCCGCCAGCTTTGAGCAGTTAAAACCTTATATTGATGACAGCATACTTACCGCCGCA
CAGCGTAAAGCGGTATTTGATTGCTGGCCCGGGCCGGTAACGTTTGTTTTTCCTGCGCCCGCGACAACGCCGCGGTGGCT
CACGGGACGTTTTGATTCCCTGGCCGTTCGTGTTACCAACCACCCGCTGGTGGTCGCGCTATGCAATGCGTATGGCAAAC
CGCTGGTTTCCACCAGCGCCAATCTGAGCGGATTACCGCCATGCCGTACCGTTGAAGAGGTGCGTGCGCAATTTGGTGAT
GATTTTCCGGTGGTTGAAGGCGCAACGGGTGGGCGTTTAAATCCTTCAGAAATTCGCGATGCTCTGACGGGCGAACTGTT
TCGACAGGGGTAA

Upstream 100 bases:

>100_bases
TGCCATTATCCGCTACTCATCGAAAAGAAAACCGCGCAGGGCGTGAAGCGCTTTTGCGCCAGTAAACAATGTGGAAAGCC
GGTTCCGGTGGAATAAACAA

Downstream 100 bases:

>100_bases
TATGATGGAAACCTATGCTGTTTTTGGAAATCCGATTGCGCACAGCAAATCGCCATTTATTCATCAGCAATTTGCTCAGC
AGCTAGATATTGTTCACCCC

Product: ribosome maturation factor

Products: NA

Alternate protein names: t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN [H]

Number of amino acids: Translated: 190; Mature: 190

Protein sequence:

>190_residues
MNNNLPIGSIAAAVDLLNKENVIAYPTEAVFGVGCDPDSETAVTRLLALKQRPVDKGLILIAASFEQLKPYIDDSILTAA
QRKAVFDCWPGPVTFVFPAPATTPRWLTGRFDSLAVRVTNHPLVVALCNAYGKPLVSTSANLSGLPPCRTVEEVRAQFGD
DFPVVEGATGGRLNPSEIRDALTGELFRQG

Sequences:

>Translated_190_residues
MNNNLPIGSIAAAVDLLNKENVIAYPTEAVFGVGCDPDSETAVTRLLALKQRPVDKGLILIAASFEQLKPYIDDSILTAA
QRKAVFDCWPGPVTFVFPAPATTPRWLTGRFDSLAVRVTNHPLVVALCNAYGKPLVSTSANLSGLPPCRTVEEVRAQFGD
DFPVVEGATGGRLNPSEIRDALTGELFRQG
>Mature_190_residues
MNNNLPIGSIAAAVDLLNKENVIAYPTEAVFGVGCDPDSETAVTRLLALKQRPVDKGLILIAASFEQLKPYIDDSILTAA
QRKAVFDCWPGPVTFVFPAPATTPRWLTGRFDSLAVRVTNHPLVVALCNAYGKPLVSTSANLSGLPPCRTVEEVRAQFGD
DFPVVEGATGGRLNPSEIRDALTGELFRQG

Specific function: Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine [H]

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Escherichia coli, GI2367210, Length=190, Percent_Identity=85.2631578947368, Blast_Score=333, Evalue=5e-93,
Organism=Escherichia coli, GI87081864, Length=136, Percent_Identity=28.6764705882353, Blast_Score=68, Evalue=3e-13,
Organism=Saccharomyces cerevisiae, GI6321269, Length=170, Percent_Identity=27.0588235294118, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 20364; Mature: 20364

Theoretical pI: Translated: 4.96; Mature: 4.96

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNNLPIGSIAAAVDLLNKENVIAYPTEAVFGVGCDPDSETAVTRLLALKQRPVDKGLIL
CCCCCCHHHHHHHHHHHCCCCEEEECCHHEEECCCCCCHHHHHHHHHHHHCCCCCCCEEE
IAASFEQLKPYIDDSILTAAQRKAVFDCWPGPVTFVFPAPATTPRWLTGRFDSLAVRVTN
EEECHHHHHHHHCHHHHHHHHHHHEEECCCCCEEEEECCCCCCCCCCCCCCCEEEEEECC
HPLVVALCNAYGKPLVSTSANLSGLPPCRTVEEVRAQFGDDFPVVEGATGGRLNPSEIRD
CCEEEEEECCCCCCEEECCCCCCCCCCCCCHHHHHHHHCCCCCEEECCCCCCCCHHHHHH
ALTGELFRQG
HHHHHHHHCC
>Mature Secondary Structure
MNNNLPIGSIAAAVDLLNKENVIAYPTEAVFGVGCDPDSETAVTRLLALKQRPVDKGLIL
CCCCCCHHHHHHHHHHHCCCCEEEECCHHEEECCCCCCHHHHHHHHHHHHCCCCCCCEEE
IAASFEQLKPYIDDSILTAAQRKAVFDCWPGPVTFVFPAPATTPRWLTGRFDSLAVRVTN
EEECHHHHHHHHCHHHHHHHHHHHEEECCCCCEEEEECCCCCCCCCCCCCCCEEEEEECC
HPLVVALCNAYGKPLVSTSANLSGLPPCRTVEEVRAQFGDDFPVVEGATGGRLNPSEIRD
CCEEEEEECCCCCCEEECCCCCCCCCCCCCHHHHHHHHCCCCCEEECCCCCCCCHHHHHH
ALTGELFRQG
HHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA