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The map label for this gene is yrbC [H]

Identifier: 16766605

GI number: 16766605

Start: 3476946

End: 3477581

Strand: Reverse

Name: yrbC [H]

Synonym: STM3310

Alternate gene names: 16766605

Gene position: 3477581-3476946 (Counterclockwise)

Preceding gene: 16766606

Following gene: 16766604

Centisome position: 71.59

GC content: 53.14

Gene sequence:

>636_bases
ATGTTTAAACGACTGATGATGGTGGCCCTGCTGGTCATTGCGCCATTAAGCGCAGCAACGGCAGCGGATCAGAGCAATCC
TTATAAACTGATGAACGAGGCGGCGCAGAAAACTTTTGATCGCCTGAAAAACGAACAGCCGAAAATTCGTGCCAATCCGG
ATTACCTGCGAGACGTTGTTGATCAGGAACTTCTGCCGTACGTGCAGGTAAAATATGCCGGCGCGCTGGTGTTGGGCCGC
TACTACAAAGAGGCGACCCCGGCGCAGCGTGAAGCCTATTTTGCAGCGTTTCGCGAATACCTGAAACAGGCATACGGTCA
GGCGCTGGCGATGTACCACGGTCAGACTTACCAGATAGCGCCTGAGCAACCGCTGGGCGATGCGACCATTGTGCCTATCC
GTGTAACGATTATCGATCCCAACGGTCGTCCGCCGGTACGCCTGGATTTCCAGTGGCGAAAAAACACCCAGACCGGCAAC
TGGCAGGCGTATGACATGATTGCGGAAGGCGTCAGCATGATCACCACCAAGCAAAATGAGTGGAGCGACCTGCTGCGTAC
TAAAGGCATCGACGGCCTGACCGCACAACTGAAATCTATCTCTCAACAGAAAATTACTTTGGACGAGAAACAGTAA

Upstream 100 bases:

>100_bases
CGACAATAAGAATTCTGGCGATGCGCCAGCCGCAACGGAAGGTCATACTGAAGCCACAACGCCCGCGGGCGAAACGAAAT
AATCTCAGGAGAATTGAGGC

Downstream 100 bases:

>100_bases
TGACGCCGCAACTCACCTGGACGCGTGAGGCGGACACTCTGGTGCTGGCGGGAGAGCTGGATCAGGACGTGTTGGCGCCG
CTATGGGACGCGCGCGTAGA

Product: transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 211; Mature: 211

Protein sequence:

>211_residues
MFKRLMMVALLVIAPLSAATAADQSNPYKLMNEAAQKTFDRLKNEQPKIRANPDYLRDVVDQELLPYVQVKYAGALVLGR
YYKEATPAQREAYFAAFREYLKQAYGQALAMYHGQTYQIAPEQPLGDATIVPIRVTIIDPNGRPPVRLDFQWRKNTQTGN
WQAYDMIAEGVSMITTKQNEWSDLLRTKGIDGLTAQLKSISQQKITLDEKQ

Sequences:

>Translated_211_residues
MFKRLMMVALLVIAPLSAATAADQSNPYKLMNEAAQKTFDRLKNEQPKIRANPDYLRDVVDQELLPYVQVKYAGALVLGR
YYKEATPAQREAYFAAFREYLKQAYGQALAMYHGQTYQIAPEQPLGDATIVPIRVTIIDPNGRPPVRLDFQWRKNTQTGN
WQAYDMIAEGVSMITTKQNEWSDLLRTKGIDGLTAQLKSISQQKITLDEKQ
>Mature_211_residues
MFKRLMMVALLVIAPLSAATAADQSNPYKLMNEAAQKTFDRLKNEQPKIRANPDYLRDVVDQELLPYVQVKYAGALVLGR
YYKEATPAQREAYFAAFREYLKQAYGQALAMYHGQTYQIAPEQPLGDATIVPIRVTIIDPNGRPPVRLDFQWRKNTQTGN
WQAYDMIAEGVSMITTKQNEWSDLLRTKGIDGLTAQLKSISQQKITLDEKQ

Specific function: Actively prevents phospholipid accumulation at the cell surface. Probably maintains lipid asymmetry in the outer membrane by retrograde trafficking of phospholipids from the outer membrane to the inner membrane. May transfer phospholipid across the peripl

COG id: COG2854

COG function: function code Q; ABC-type transport system involved in resistance to organic solvents, auxiliary component

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mlaC/ttg2D family [H]

Homologues:

Organism=Escherichia coli, GI1789583, Length=211, Percent_Identity=93.8388625592417, Blast_Score=412, Evalue=1e-116,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023094
- InterPro:   IPR008869 [H]

Pfam domain/function: PF05494 Tol_Tol_Ttg2 [H]

EC number: NA

Molecular weight: Translated: 24005; Mature: 24005

Theoretical pI: Translated: 9.50; Mature: 9.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKRLMMVALLVIAPLSAATAADQSNPYKLMNEAAQKTFDRLKNEQPKIRANPDYLRDVV
CHHHHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
DQELLPYVQVKYAGALVLGRYYKEATPAQREAYFAAFREYLKQAYGQALAMYHGQTYQIA
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEC
PEQPLGDATIVPIRVTIIDPNGRPPVRLDFQWRKNTQTGNWQAYDMIAEGVSMITTKQNE
CCCCCCCEEEEEEEEEEECCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCHH
WSDLLRTKGIDGLTAQLKSISQQKITLDEKQ
HHHHHHHCCCCHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MFKRLMMVALLVIAPLSAATAADQSNPYKLMNEAAQKTFDRLKNEQPKIRANPDYLRDVV
CHHHHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
DQELLPYVQVKYAGALVLGRYYKEATPAQREAYFAAFREYLKQAYGQALAMYHGQTYQIA
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEC
PEQPLGDATIVPIRVTIIDPNGRPPVRLDFQWRKNTQTGNWQAYDMIAEGVSMITTKQNE
CCCCCCCEEEEEEEEEEECCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCHH
WSDLLRTKGIDGLTAQLKSISQQKITLDEKQ
HHHHHHHCCCCHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]