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The map label for this gene is agaR [H]

Identifier: 16766550

GI number: 16766550

Start: 3421438

End: 3422271

Strand: Reverse

Name: agaR [H]

Synonym: STM3252

Alternate gene names: 16766550

Gene position: 3422271-3421438 (Counterclockwise)

Preceding gene: 16766561

Following gene: 16766549

Centisome position: 70.45

GC content: 51.8

Gene sequence:

>834_bases
GTGGCAAAACCATCTACCAGCCTGTTGAAAAGGCGTCTGGACATTGCCGAAATCGTCCGTAAAAACGGCGAAATAAAAGT
AGACGATTTGGCTGAAATGTTATCGGTTTCAGGGGTAACGATCCGTAATGATCTCAATTACCTGGAGCAGCAAGGCTATC
TGAAACGCTCCTTTGGCGGAGCGATTTACACGGCCCAACCCGTCAGAGCAGCGGTAAGCCATGAAGTGGTGCAGTCGCAG
GCGTTAGAGCATAGCGTAGAGCTTGAACTGGCTAAGCAAGTTGCCCGTCTGGTCTGCGACGACGATACCGTGTTTCTGGG
GGCCGGAGAGGTGTTGCGTAAAGCGCTTCCTTTCCTGGGCGATTATCGGGATCTGTGCCTTATCATCAACGATCTTAGCC
ATGTTGCACCGGCCCGTGATTATATCGATGGTGAAATTGTGTTGTTGGGCGGTGTACTGGGGCATAGTGGTCAGGCGTTG
GGGGGCGAAATCGCCATCCAATCTTTGCAACAATTTCAACCGTCATGTTGTCTGGTGATGGTGGACCATATCAGCGAGGA
TGGCACGCTCAACGTGAAAAACGAAAGTGCAGCTGCTTTGCTAAGTGAATGCCTGCGCCTTAGTGGACAGAGTATTGCCG
TGGTGGCGCAGCGTCCGATTCATGATGTGGCGCGTTATCCGGTAGGAAAACTGAATACGCTGAGCGCGATTATTACGCCA
CAGATTGTCGCCGCTGAGTACCACTCACGGTTTCTGGCCGACGGCTTAACCAACAGCTATACCAATAACGAATGTCTGAC
CTGGATAAACCCGACCCTGCATCAGGCAAGATGA

Upstream 100 bases:

>100_bases
CGGTGACGTGGTGCAAAATTGACATCCCCTGTCAGAAGTTTAAAAATGAAAGTTAAAGCACGGGATAACTTCCCGACGAA
GCGGAAAAAAAGGGTATGTT

Downstream 100 bases:

>100_bases
AGGACAACGCATGAACATAACAATCGCAACATTGGGTGAATTGCTCGTCGAGTTTCTGGCAAAAAAAGAGAACCAGGGAT
TTTCCTCACCGGGGGAATTT

Product: AGA operon transcriptional repressor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 277; Mature: 276

Protein sequence:

>277_residues
MAKPSTSLLKRRLDIAEIVRKNGEIKVDDLAEMLSVSGVTIRNDLNYLEQQGYLKRSFGGAIYTAQPVRAAVSHEVVQSQ
ALEHSVELELAKQVARLVCDDDTVFLGAGEVLRKALPFLGDYRDLCLIINDLSHVAPARDYIDGEIVLLGGVLGHSGQAL
GGEIAIQSLQQFQPSCCLVMVDHISEDGTLNVKNESAAALLSECLRLSGQSIAVVAQRPIHDVARYPVGKLNTLSAIITP
QIVAAEYHSRFLADGLTNSYTNNECLTWINPTLHQAR

Sequences:

>Translated_277_residues
MAKPSTSLLKRRLDIAEIVRKNGEIKVDDLAEMLSVSGVTIRNDLNYLEQQGYLKRSFGGAIYTAQPVRAAVSHEVVQSQ
ALEHSVELELAKQVARLVCDDDTVFLGAGEVLRKALPFLGDYRDLCLIINDLSHVAPARDYIDGEIVLLGGVLGHSGQAL
GGEIAIQSLQQFQPSCCLVMVDHISEDGTLNVKNESAAALLSECLRLSGQSIAVVAQRPIHDVARYPVGKLNTLSAIITP
QIVAAEYHSRFLADGLTNSYTNNECLTWINPTLHQAR
>Mature_276_residues
AKPSTSLLKRRLDIAEIVRKNGEIKVDDLAEMLSVSGVTIRNDLNYLEQQGYLKRSFGGAIYTAQPVRAAVSHEVVQSQA
LEHSVELELAKQVARLVCDDDTVFLGAGEVLRKALPFLGDYRDLCLIINDLSHVAPARDYIDGEIVLLGGVLGHSGQALG
GEIAIQSLQQFQPSCCLVMVDHISEDGTLNVKNESAAALLSECLRLSGQSIAVVAQRPIHDVARYPVGKLNTLSAIITPQ
IVAAEYHSRFLADGLTNSYTNNECLTWINPTLHQAR

Specific function: Repressor of the glycerol-3-phosphate regulon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789519, Length=199, Percent_Identity=30.6532663316583, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1789059, Length=188, Percent_Identity=25.531914893617, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787540, Length=235, Percent_Identity=25.9574468085106, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1789829, Length=181, Percent_Identity=27.6243093922652, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI87082344, Length=236, Percent_Identity=24.5762711864407, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 30157; Mature: 30026

Theoretical pI: Translated: 5.58; Mature: 5.58

Prosite motif: PS00894 HTH_DEOR_1 ; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKPSTSLLKRRLDIAEIVRKNGEIKVDDLAEMLSVSGVTIRNDLNYLEQQGYLKRSFGG
CCCCHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCEEEEHHHHHHHHCCCHHHHCCC
AIYTAQPVRAAVSHEVVQSQALEHSVELELAKQVARLVCDDDTVFLGAGEVLRKALPFLG
EEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHC
DYRDLCLIINDLSHVAPARDYIDGEIVLLGGVLGHSGQALGGEIAIQSLQQFQPSCCLVM
CHHHHHHHHHHHHHHCCHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCEEEE
VDHISEDGTLNVKNESAAALLSECLRLSGQSIAVVAQRPIHDVARYPVGKLNTLSAIITP
EECCCCCCEEEECCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHCCCCCCHHHHHHHHH
QIVAAEYHSRFLADGLTNSYTNNECLTWINPTLHQAR
HHHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHCCC
>Mature Secondary Structure 
AKPSTSLLKRRLDIAEIVRKNGEIKVDDLAEMLSVSGVTIRNDLNYLEQQGYLKRSFGG
CCCHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCEEEEHHHHHHHHCCCHHHHCCC
AIYTAQPVRAAVSHEVVQSQALEHSVELELAKQVARLVCDDDTVFLGAGEVLRKALPFLG
EEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHC
DYRDLCLIINDLSHVAPARDYIDGEIVLLGGVLGHSGQALGGEIAIQSLQQFQPSCCLVM
CHHHHHHHHHHHHHHCCHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCEEEE
VDHISEDGTLNVKNESAAALLSECLRLSGQSIAVVAQRPIHDVARYPVGKLNTLSAIITP
EECCCCCCEEEECCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHCCCCCCHHHHHHHHH
QIVAAEYHSRFLADGLTNSYTNNECLTWINPTLHQAR
HHHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8752340; 10984043 [H]