Click here to switch to the map view.

The map label for this gene is ygjR [H]

Identifier: 16766522

GI number: 16766522

Start: 3391006

End: 3392004

Strand: Direct

Name: ygjR [H]

Synonym: STM3223

Alternate gene names: 16766522

Gene position: 3391006-3392004 (Clockwise)

Preceding gene: 16766521

Following gene: 16766523

Centisome position: 69.81

GC content: 53.75

Gene sequence:

>999_bases
ATGATACGTTTCGCTGTAATTGGGACTAACTGGATCACGCGCCAGTTTGTCGACGCCGCCCATGAAACCGGCAAATTCAG
GCTCGCCGCCGTTTACTCCCGTAGTCTTGAACAGGCGCAGTCTTTCGCAAATGATTATCCCGTCGAGCATCTGTTTACCT
CGCTGGAAGCGATGGCGCAAAGCGACGCGATTGAGGCGGTTTATATCGCCAGCCCGAATTCCCTGCATTTCTCCCAGACG
CAGCGCTTTTTGCAGCATAAAAAACATGTCATGTGCGAAAAGCCGCTGGCTTCTAACCTGGCGGAGGTTGATGCCGCTAT
CGCCTGCGCGCGCGATAATCAGCGGGTACTGTTTGAAGCCTTTAAAACCGCCTGCCTGCCCAATTTCCTGCTGCTGCGGG
AATCGTTGCCGAAAATCGGCAGAATGCATAAAGCATTACTAAATTACTGCCAGTACTCTTCACGTTATCAGCGCTATCTG
AACGGTGAAAATCCGAATACGTTTAATCCGGCCTTCTCCAATGGTTCGATTATGGATATCGGGTATTACTGTCTGGCGTC
GGCGATCGCGCTATGGGGCGAGCCGCGCAGCGTTCAGGCGTCGGCGAATTTATTGGAAAGCGGAGTAGATGCGCACGGCG
TCGTGGTTATGGATTACGGCGATTTTAGCGTCACGCTACAGCATTCCAAAGTCAGCGACTCGGTACTGGCCAGTGAAATT
CAGGGCGAGAGGGGATCGCTGGTCATTGAAAAGCTGTCGGAATGCCAGAAAGTGTGTTTTGCGCCGCGCGGCGCGCTGAT
GCAGGATCTGACCCAGCCTCAGCATATTAATACCATGCTGTATGAAGCCGGGGCGTTTGCCCAGCTTATTGAAAACCACG
CCGTGGAACATCCGGGGTTGTCGCTAAGTCGCGCCACGGCAAAATGGCTGACAGAAATACGCCGTCAAACCGGGGTCATC
TTCCCGGCGGACGATCTGACCCATCCCCTTACTGCGTAA

Upstream 100 bases:

>100_bases
TCTCGCCAGTAAAATGCCAGAGTGCGTCGCAGCGCACTGGCAAGGGCGGAAAGGCGTGCTACATTGACGAAAAATCCCTT
TCTGGAGTCCGCTGACGTTT

Downstream 100 bases:

>100_bases
AATTATGTAAATCATATGTTACAGGTCATTGACTCTACGCGTGGCCTGTCATACTTTGTTACGCGCAAAGGGGAGTAACT
TCATTGCCGGTCGATCGTCA

Product: dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 332; Mature: 332

Protein sequence:

>332_residues
MIRFAVIGTNWITRQFVDAAHETGKFRLAAVYSRSLEQAQSFANDYPVEHLFTSLEAMAQSDAIEAVYIASPNSLHFSQT
QRFLQHKKHVMCEKPLASNLAEVDAAIACARDNQRVLFEAFKTACLPNFLLLRESLPKIGRMHKALLNYCQYSSRYQRYL
NGENPNTFNPAFSNGSIMDIGYYCLASAIALWGEPRSVQASANLLESGVDAHGVVVMDYGDFSVTLQHSKVSDSVLASEI
QGERGSLVIEKLSECQKVCFAPRGALMQDLTQPQHINTMLYEAGAFAQLIENHAVEHPGLSLSRATAKWLTEIRRQTGVI
FPADDLTHPLTA

Sequences:

>Translated_332_residues
MIRFAVIGTNWITRQFVDAAHETGKFRLAAVYSRSLEQAQSFANDYPVEHLFTSLEAMAQSDAIEAVYIASPNSLHFSQT
QRFLQHKKHVMCEKPLASNLAEVDAAIACARDNQRVLFEAFKTACLPNFLLLRESLPKIGRMHKALLNYCQYSSRYQRYL
NGENPNTFNPAFSNGSIMDIGYYCLASAIALWGEPRSVQASANLLESGVDAHGVVVMDYGDFSVTLQHSKVSDSVLASEI
QGERGSLVIEKLSECQKVCFAPRGALMQDLTQPQHINTMLYEAGAFAQLIENHAVEHPGLSLSRATAKWLTEIRRQTGVI
FPADDLTHPLTA
>Mature_332_residues
MIRFAVIGTNWITRQFVDAAHETGKFRLAAVYSRSLEQAQSFANDYPVEHLFTSLEAMAQSDAIEAVYIASPNSLHFSQT
QRFLQHKKHVMCEKPLASNLAEVDAAIACARDNQRVLFEAFKTACLPNFLLLRESLPKIGRMHKALLNYCQYSSRYQRYL
NGENPNTFNPAFSNGSIMDIGYYCLASAIALWGEPRSVQASANLLESGVDAHGVVVMDYGDFSVTLQHSKVSDSVLASEI
QGERGSLVIEKLSECQKVCFAPRGALMQDLTQPQHINTMLYEAGAFAQLIENHAVEHPGLSLSRATAKWLTEIRRQTGVI
FPADDLTHPLTA

Specific function: Unknown

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family [H]

Homologues:

Organism=Homo sapiens, GI7657212, Length=355, Percent_Identity=25.6338028169014, Blast_Score=92, Evalue=8e-19,
Organism=Escherichia coli, GI145693182, Length=326, Percent_Identity=83.4355828220859, Blast_Score=581, Evalue=1e-167,
Organism=Drosophila melanogaster, GI24581117, Length=346, Percent_Identity=25.4335260115607, Blast_Score=99, Evalue=3e-21,
Organism=Drosophila melanogaster, GI24581115, Length=344, Percent_Identity=23.2558139534884, Blast_Score=69, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 36889; Mature: 36889

Theoretical pI: Translated: 6.64; Mature: 6.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRFAVIGTNWITRQFVDAAHETGKFRLAAVYSRSLEQAQSFANDYPVEHLFTSLEAMAQ
CEEEEEECCHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
SDAIEAVYIASPNSLHFSQTQRFLQHKKHVMCEKPLASNLAEVDAAIACARDNQRVLFEA
CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHH
FKTACLPNFLLLRESLPKIGRMHKALLNYCQYSSRYQRYLNGENPNTFNPAFSNGSIMDI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEHH
GYYCLASAIALWGEPRSVQASANLLESGVDAHGVVVMDYGDFSVTLQHSKVSDSVLASEI
HHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCEEEEEECCEEEEEECCHHHHHHHHHHH
QGERGSLVIEKLSECQKVCFAPRGALMQDLTQPQHINTMLYEAGAFAQLIENHAVEHPGL
CCCCCHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
SLSRATAKWLTEIRRQTGVIFPADDLTHPLTA
CHHHHHHHHHHHHHHHCCCEECCCCCCCCCCC
>Mature Secondary Structure
MIRFAVIGTNWITRQFVDAAHETGKFRLAAVYSRSLEQAQSFANDYPVEHLFTSLEAMAQ
CEEEEEECCHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
SDAIEAVYIASPNSLHFSQTQRFLQHKKHVMCEKPLASNLAEVDAAIACARDNQRVLFEA
CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHH
FKTACLPNFLLLRESLPKIGRMHKALLNYCQYSSRYQRYLNGENPNTFNPAFSNGSIMDI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEHH
GYYCLASAIALWGEPRSVQASANLLESGVDAHGVVVMDYGDFSVTLQHSKVSDSVLASEI
HHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCEEEEEECCEEEEEECCHHHHHHHHHHH
QGERGSLVIEKLSECQKVCFAPRGALMQDLTQPQHINTMLYEAGAFAQLIENHAVEHPGL
CCCCCHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
SLSRATAKWLTEIRRQTGVIFPADDLTHPLTA
CHHHHHHHHHHHHHHHCCCEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]