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The map label for this gene is ygiV [H]

Identifier: 16766475

GI number: 16766475

Start: 3339316

End: 3340182

Strand: Reverse

Name: ygiV [H]

Synonym: STM3175

Alternate gene names: 16766475

Gene position: 3340182-3339316 (Counterclockwise)

Preceding gene: 16766476

Following gene: 16766474

Centisome position: 68.76

GC content: 58.02

Gene sequence:

>867_bases
ATGAATGACCTGATCAGCGCGGCTTATTCCGAACGTCTGCGGCGCGTTTGCGACCACATTGAGCGTCATCTGGATGAGCC
TCTGTCGATTGAGGCGTTAAGCCGGATGGCGCACAGCTCGCCGTTTCATTTTCACCGGCAGTTTACCACCTGGAGCGGGC
TTCCGCTCTATCGCTATATCCAGTGGTTGCGTTTGCGCCGCGCGTCATGGCGGCTGGCGTTTAACCCGCAGGATAAAGTT
ATCGATATCGCGCTGGATGCCGGGTTTCAGAATCCGGAGTCGTTCACACGTGCTTTCAAAACCGCGTTTGGTCAAAGCCC
GCGCCGGTTTCGGCAATCGCCGGACTGGCTGGCCTGGCACCAGCGCGTTCCTAAACTTGCGTTACAGGAGCAGCATGTCA
TGGACGTAAAAATCGTTGAATTTCCACCTACCCGCGTCGCGATGCTGACGCATCTGGGGCATCCGGATAAGGTCAACGCC
AGCGCGGCGAAATTTATTGCATGGCGACGCGAAACGGGCCAGTCGCCGATTGCCAGCAGTCAAACTTTTGGTATTGCCTG
GCACGACCCGCAGACGACGCCGCCGGCTCAATTCCGCTTTGATATCTGCGGCAGCGTCCGCCAGCCGATAGCCGAAAATG
ACGTTGGCGTGGTGAATAGCGAGATTCCTGGCGGGCGCTGCGCGGTGGTGCGCCATCAGGGATCGCTCGACAGCCTCCCG
GAGAGCGTGTGGTATTTATTCCGCGAATGGCTACCCGCCAGCGGTGAGACGCCGCGCGATTTTCCGGTCTTCTTCCAGTA
CCTGAATTTCGTCCATGAGGTCGCGGAACATGAGCTGCTGACGGATATCTATCTGCCGCTTCGTTAA

Upstream 100 bases:

>100_bases
TAAAACAGATTCGTAAAGTGAATCCGTAATCCCACATTGCGCAAGATCGGTCAGGATTCACAGCCGCCCGGTGGGCAGAA
TAGGCCACAAGGAGGCAGTG

Downstream 100 bases:

>100_bases
CTTCCTCGCCACCTGTCTCACGGTTTGTGACTCAGACCGTGAGATAGGGTATTATCTGCGGCAATATTGCCGTCCGAACG
GTCAGCATGCAGATTGAGGA

Product: regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 288; Mature: 288

Protein sequence:

>288_residues
MNDLISAAYSERLRRVCDHIERHLDEPLSIEALSRMAHSSPFHFHRQFTTWSGLPLYRYIQWLRLRRASWRLAFNPQDKV
IDIALDAGFQNPESFTRAFKTAFGQSPRRFRQSPDWLAWHQRVPKLALQEQHVMDVKIVEFPPTRVAMLTHLGHPDKVNA
SAAKFIAWRRETGQSPIASSQTFGIAWHDPQTTPPAQFRFDICGSVRQPIAENDVGVVNSEIPGGRCAVVRHQGSLDSLP
ESVWYLFREWLPASGETPRDFPVFFQYLNFVHEVAEHELLTDIYLPLR

Sequences:

>Translated_288_residues
MNDLISAAYSERLRRVCDHIERHLDEPLSIEALSRMAHSSPFHFHRQFTTWSGLPLYRYIQWLRLRRASWRLAFNPQDKV
IDIALDAGFQNPESFTRAFKTAFGQSPRRFRQSPDWLAWHQRVPKLALQEQHVMDVKIVEFPPTRVAMLTHLGHPDKVNA
SAAKFIAWRRETGQSPIASSQTFGIAWHDPQTTPPAQFRFDICGSVRQPIAENDVGVVNSEIPGGRCAVVRHQGSLDSLP
ESVWYLFREWLPASGETPRDFPVFFQYLNFVHEVAEHELLTDIYLPLR
>Mature_288_residues
MNDLISAAYSERLRRVCDHIERHLDEPLSIEALSRMAHSSPFHFHRQFTTWSGLPLYRYIQWLRLRRASWRLAFNPQDKV
IDIALDAGFQNPESFTRAFKTAFGQSPRRFRQSPDWLAWHQRVPKLALQEQHVMDVKIVEFPPTRVAMLTHLGHPDKVNA
SAAKFIAWRRETGQSPIASSQTFGIAWHDPQTTPPAQFRFDICGSVRQPIAENDVGVVNSEIPGGRCAVVRHQGSLDSLP
ESVWYLFREWLPASGETPRDFPVFFQYLNFVHEVAEHELLTDIYLPLR

Specific function: Represses expression of mcbR [H]

COG id: COG3449

COG function: function code L; DNA gyrase inhibitor

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI48994918, Length=154, Percent_Identity=55.1948051948052, Blast_Score=182, Evalue=2e-47,
Organism=Escherichia coli, GI1790857, Length=134, Percent_Identity=35.8208955223881, Blast_Score=74, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010499
- InterPro:   IPR011256 [H]

Pfam domain/function: PF06445 AraC_E_bind [H]

EC number: NA

Molecular weight: Translated: 33324; Mature: 33324

Theoretical pI: Translated: 8.16; Mature: 8.16

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDLISAAYSERLRRVCDHIERHLDEPLSIEALSRMAHSSPFHFHRQFTTWSGLPLYRYI
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHEEECCCCCCHHHHHH
QWLRLRRASWRLAFNPQDKVIDIALDAGFQNPESFTRAFKTAFGQSPRRFRQSPDWLAWH
HHHHHHHHCEEEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHCCCCHHHHH
QRVPKLALQEQHVMDVKIVEFPPTRVAMLTHLGHPDKVNASAAKFIAWRRETGQSPIASS
HHCHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCC
QTFGIAWHDPQTTPPAQFRFDICGSVRQPIAENDVGVVNSEIPGGRCAVVRHQGSLDSLP
CEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEECCCCCCEEEEEEECCCHHHHH
ESVWYLFREWLPASGETPRDFPVFFQYLNFVHEVAEHELLTDIYLPLR
HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNDLISAAYSERLRRVCDHIERHLDEPLSIEALSRMAHSSPFHFHRQFTTWSGLPLYRYI
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHEEECCCCCCHHHHHH
QWLRLRRASWRLAFNPQDKVIDIALDAGFQNPESFTRAFKTAFGQSPRRFRQSPDWLAWH
HHHHHHHHCEEEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHCCCCHHHHH
QRVPKLALQEQHVMDVKIVEFPPTRVAMLTHLGHPDKVNASAAKFIAWRRETGQSPIASS
HHCHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCC
QTFGIAWHDPQTTPPAQFRFDICGSVRQPIAENDVGVVNSEIPGGRCAVVRHQGSLDSLP
CEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEECCCCCCEEEEEEECCCHHHHH
ESVWYLFREWLPASGETPRDFPVFFQYLNFVHEVAEHELLTDIYLPLR
HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]