Click here to switch to the map view.

The map label for this gene is ygiK

Identifier: 16766471

GI number: 16766471

Start: 3333115

End: 3334422

Strand: Direct

Name: ygiK

Synonym: STM3171

Alternate gene names: 16766471

Gene position: 3333115-3334422 (Clockwise)

Preceding gene: 16766470

Following gene: 16766477

Centisome position: 68.62

GC content: 51.15

Gene sequence:

>1308_bases
ATGGACTTTGAATATATTTACCCAATAATTGTTTTATTTGGCAGCTTTGCCATTATACTGGCGGTCGGCGTTCCTATTAC
ATTCGCTATCGGGCTGTCGTCCTTATTCTCAATCCTGATAGCCCTTCCCCCGGATGCGGCAATCTCGGTTATTTCGCAAA
AAATGACCGTCGGTCTCGATGGCTTTACGCTGCTGGCGATCCCCTTTTTTGTGTTAGCCGGCAATATCATGAATACCGGG
GGAATCGCCCGGCGCCTGGTGAATCTGGCTCAGGCGTTAGTTGGCCGCCTTCCCGGTTCGCTGGCGCACTGCAATATTCT
GGCGAACACCCTGTTTGGCGCGATATCCGGCTCGGCGGTCGCTTCTGCGGCCGCGGTGGGCGGCATCATGTCGCCATTAC
AGGAAAAAGAGGGCTACTCTCCGGCGTTCTCTACGGCGATCAACGTCGCTTCGGCGCCGATTGGCCTGATGATCCCGCCC
AGCAATGTGCTAATTGTCTATTCGCTGGCTAGCGGCGGCACCTCTGTCGCCGCCCTGTTTTTGGCGGGCTACCTGCCCGG
CATCTTAACCGCGCTGGCTTTAATGACGGTAGCGGCGCTGTATGCCCATCGCCACCATTACCCGGTTGCCGAACGCATCA
ACCTGCGGCAGTTTCTGTCGGTATTCCGCGATTCGTTGCCCAGCCTGTTGCTGATATTTATTATTATCGGCGGCATTATC
GGCGGCGTATTTACGCCAACAGAGGCCTCTGCGATCGCGGTAATCTATAGCCTGGCGCTGGCGGCCATTTATCGAGAAAT
TAATGTGAGTAAGTTGCGCGATATTCTGCTGGATTCGGTAGTAACCAGCTCTATTGTTCTCTTACTGGTCGGCTGCTCAA
TGGGAATGTCATGGGCGATGACCAATGCTGATGTTCCTGAACTGATTAATGAAATGATTACCAGCGTGTCCGAAAATAAA
TGGGTCATCTTGCTGATTATCAATCTCATTTTGTTATTCGTCGGGACGTTTATGGATATTACCCCGGCTATTCTAATCTT
TACGCCTATTTTCCTTCCCATTGCTCAACATCTGGGAATCGACCCTGTCCATTTTGGCATTATTATGGTTTTCAATTTAA
CCATCGGACTGTGTACGCCCCCGGTAGGCACTATTTTGTTCGTCGGTTGCAGTATCGGCAAAATCAGTATTGATAAAGTC
GTCAAACCGCTATTACCGATGTTTCTGGCACTCTTTGTGGTCATGGCGATGATTTGCTACTTCCCGCAGTTGAGTCTGCT
GCTTCCCACGCTGTTTGCTCCTTCCTGA

Upstream 100 bases:

>100_bases
TATTGGGTCATGCCGATTAGCGGCGTCATCCTGGTGTACTACACCATTGTGAACGTTATTGATAATTATCATCAGCGCCA
TCTTCGCTAACGAGGGATAT

Downstream 100 bases:

>100_bases
AAACCCTGACGGGTCTGCGCTATTCAGACCCGTACTCGGACGCTTTACGACGCTGGATTCACCAGCATTTGCCCAATCGA
GCCGCGGTCAGCCATTTCCA

Product: transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 435; Mature: 435

Protein sequence:

>435_residues
MDFEYIYPIIVLFGSFAIILAVGVPITFAIGLSSLFSILIALPPDAAISVISQKMTVGLDGFTLLAIPFFVLAGNIMNTG
GIARRLVNLAQALVGRLPGSLAHCNILANTLFGAISGSAVASAAAVGGIMSPLQEKEGYSPAFSTAINVASAPIGLMIPP
SNVLIVYSLASGGTSVAALFLAGYLPGILTALALMTVAALYAHRHHYPVAERINLRQFLSVFRDSLPSLLLIFIIIGGII
GGVFTPTEASAIAVIYSLALAAIYREINVSKLRDILLDSVVTSSIVLLLVGCSMGMSWAMTNADVPELINEMITSVSENK
WVILLIINLILLFVGTFMDITPAILIFTPIFLPIAQHLGIDPVHFGIIMVFNLTIGLCTPPVGTILFVGCSIGKISIDKV
VKPLLPMFLALFVVMAMICYFPQLSLLLPTLFAPS

Sequences:

>Translated_435_residues
MDFEYIYPIIVLFGSFAIILAVGVPITFAIGLSSLFSILIALPPDAAISVISQKMTVGLDGFTLLAIPFFVLAGNIMNTG
GIARRLVNLAQALVGRLPGSLAHCNILANTLFGAISGSAVASAAAVGGIMSPLQEKEGYSPAFSTAINVASAPIGLMIPP
SNVLIVYSLASGGTSVAALFLAGYLPGILTALALMTVAALYAHRHHYPVAERINLRQFLSVFRDSLPSLLLIFIIIGGII
GGVFTPTEASAIAVIYSLALAAIYREINVSKLRDILLDSVVTSSIVLLLVGCSMGMSWAMTNADVPELINEMITSVSENK
WVILLIINLILLFVGTFMDITPAILIFTPIFLPIAQHLGIDPVHFGIIMVFNLTIGLCTPPVGTILFVGCSIGKISIDKV
VKPLLPMFLALFVVMAMICYFPQLSLLLPTLFAPS
>Mature_435_residues
MDFEYIYPIIVLFGSFAIILAVGVPITFAIGLSSLFSILIALPPDAAISVISQKMTVGLDGFTLLAIPFFVLAGNIMNTG
GIARRLVNLAQALVGRLPGSLAHCNILANTLFGAISGSAVASAAAVGGIMSPLQEKEGYSPAFSTAINVASAPIGLMIPP
SNVLIVYSLASGGTSVAALFLAGYLPGILTALALMTVAALYAHRHHYPVAERINLRQFLSVFRDSLPSLLLIFIIIGGII
GGVFTPTEASAIAVIYSLALAAIYREINVSKLRDILLDSVVTSSIVLLLVGCSMGMSWAMTNADVPELINEMITSVSENK
WVILLIINLILLFVGTFMDITPAILIFTPIFLPIAQHLGIDPVHFGIIMVFNLTIGLCTPPVGTILFVGCSIGKISIDKV
VKPLLPMFLALFVVMAMICYFPQLSLLLPTLFAPS

Specific function: Unknown

COG id: COG1593

COG function: function code G; TRAP-type C4-dicarboxylate transport system, large permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yiaN/ygiK family

Homologues:

Organism=Escherichia coli, GI48994950, Length=409, Percent_Identity=34.9633251833741, Blast_Score=228, Evalue=4e-61,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YGIK_SALTY (P40800)

Other databases:

- EMBL:   U09309
- EMBL:   AE006468
- RefSeq:   NP_462086.1
- GeneID:   1254694
- GenomeReviews:   AE006468_GR
- KEGG:   stm:STM3171
- NMPDR:   fig|99287.1.peg.3062
- HOGENOM:   HBG563446
- OMA:   ATAMQSM
- ProtClustDB:   CLSK894808
- BioCyc:   STYP99287:STM3171-MONOMER
- InterPro:   IPR010656
- InterPro:   IPR004681
- TIGRFAMs:   TIGR00786

Pfam domain/function: PF06808 DctM

EC number: NA

Molecular weight: Translated: 46005; Mature: 46005

Theoretical pI: Translated: 6.50; Mature: 6.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xe2986a0)-; HASH(0x111d63c4)-; HASH(0x11930418)-; HASH(0x1185d6e8)-; HASH(0x118b86f8)-; HASH(0x112bae14)-; HASH(0x10d2fa6c)-; HASH(0xe97f3c8)-; HASH(0x10bf070c)-; HASH(0x11889830)-; HASH(0x116ed0ac)-;

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFEYIYPIIVLFGSFAIILAVGVPITFAIGLSSLFSILIALPPDAAISVISQKMTVGLD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC
GFTLLAIPFFVLAGNIMNTGGIARRLVNLAQALVGRLPGSLAHCNILANTLFGAISGSAV
CHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHH
ASAAAVGGIMSPLQEKEGYSPAFSTAINVASAPIGLMIPPSNVLIVYSLASGGTSVAALF
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEEEECCCCEEEEEEECCCCHHHHHHH
LAGYLPGILTALALMTVAALYAHRHHYPVAERINLRQFLSVFRDSLPSLLLIFIIIGGII
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
GGVFTPTEASAIAVIYSLALAAIYREINVSKLRDILLDSVVTSSIVLLLVGCSMGMSWAM
HCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
TNADVPELINEMITSVSENKWVILLIINLILLFVGTFMDITPAILIFTPIFLPIAQHLGI
CCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
DPVHFGIIMVFNLTIGLCTPPVGTILFVGCSIGKISIDKVVKPLLPMFLALFVVMAMICY
CHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHH
FPQLSLLLPTLFAPS
CCHHHHHHHHHCCCH
>Mature Secondary Structure
MDFEYIYPIIVLFGSFAIILAVGVPITFAIGLSSLFSILIALPPDAAISVISQKMTVGLD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC
GFTLLAIPFFVLAGNIMNTGGIARRLVNLAQALVGRLPGSLAHCNILANTLFGAISGSAV
CHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHH
ASAAAVGGIMSPLQEKEGYSPAFSTAINVASAPIGLMIPPSNVLIVYSLASGGTSVAALF
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEEEECCCCEEEEEEECCCCHHHHHHH
LAGYLPGILTALALMTVAALYAHRHHYPVAERINLRQFLSVFRDSLPSLLLIFIIIGGII
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
GGVFTPTEASAIAVIYSLALAAIYREINVSKLRDILLDSVVTSSIVLLLVGCSMGMSWAM
HCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
TNADVPELINEMITSVSENKWVILLIINLILLFVGTFMDITPAILIFTPIFLPIAQHLGI
CCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
DPVHFGIIMVFNLTIGLCTPPVGTILFVGCSIGKISIDKVVKPLLPMFLALFVVMAMICY
CHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHH
FPQLSLLLPTLFAPS
CCHHHHHHHHHCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11677609