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The map label for this gene is ygaV [H]

Identifier: 16766108

GI number: 16766108

Start: 2946041

End: 2946340

Strand: Direct

Name: ygaV [H]

Synonym: STM2797

Alternate gene names: 16766108

Gene position: 2946041-2946340 (Clockwise)

Preceding gene: 16766105

Following gene: 16766109

Centisome position: 60.65

GC content: 51.33

Gene sequence:

>300_bases
ATGACAGAGCTTGAACAACTTCAGGCCAGCGCAGAACAGGCGGCGGCCCTGCTCAAAGCGATGAGCCACCCAAAAAGATT
ACTGATTTTATGTATGCTTTGCGGTTCGCCAAAAACCAGCGCAGGCGAACTGGCGCGCATTACCGGGCTAAGCCCCTCCG
CGACGTCGCAACATCTGGCGCGGATGCGGGAAGAAGGGCTGATTGATAGTCAACGCGATGCCCAGCGCATTCACTATTTC
ATTAAAAATGAGGCGGTTAATACGATTATCGCCACGTTAAAGAATCTCTATTGTCCATAA

Upstream 100 bases:

>100_bases
GTCGCGCGCCGCGCTTTTACCCTCCTTTACGCTCTTTACGCTGGCATTAGGTTGATGTTTATTTTAGAATTAACTAAATT
TAGAAAATACTTAAATAACT

Downstream 100 bases:

>100_bases
GGAGGCACGATGTCCATTGGGATAGTTTCCCCCCGTGAGGCGCAAGCGCTGATAGCGCAAGGCGCGAAACTGATTGATGT
GCGCGACGCCGATGAATATC

Product: regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 99; Mature: 98

Protein sequence:

>99_residues
MTELEQLQASAEQAAALLKAMSHPKRLLILCMLCGSPKTSAGELARITGLSPSATSQHLARMREEGLIDSQRDAQRIHYF
IKNEAVNTIIATLKNLYCP

Sequences:

>Translated_99_residues
MTELEQLQASAEQAAALLKAMSHPKRLLILCMLCGSPKTSAGELARITGLSPSATSQHLARMREEGLIDSQRDAQRIHYF
IKNEAVNTIIATLKNLYCP
>Mature_98_residues
TELEQLQASAEQAAALLKAMSHPKRLLILCMLCGSPKTSAGELARITGLSPSATSQHLARMREEGLIDSQRDAQRIHYFI
KNEAVNTIIATLKNLYCP

Specific function: Functions as transcription repressor (Probable) [H]

COG id: COG0640

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH arsR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789021, Length=99, Percent_Identity=89.8989898989899, Blast_Score=179, Evalue=4e-47,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001845
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01022 HTH_5 [H]

EC number: NA

Molecular weight: Translated: 10880; Mature: 10749

Theoretical pI: Translated: 8.51; Mature: 8.51

Prosite motif: PS50987 HTH_ARSR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
7.1 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTELEQLQASAEQAAALLKAMSHPKRLLILCMLCGSPKTSAGELARITGLSPSATSQHLA
CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHCCCCCCHHHHHHH
RMREEGLIDSQRDAQRIHYFIKNEAVNTIIATLKNLYCP
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TELEQLQASAEQAAALLKAMSHPKRLLILCMLCGSPKTSAGELARITGLSPSATSQHLA
CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHCCCCCCHHHHHHH
RMREEGLIDSQRDAQRIHYFIKNEAVNTIIATLKNLYCP
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]