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The map label for this gene is ycdD [H]

Identifier: 16766017

GI number: 16766017

Start: 2852997

End: 2853404

Strand: Direct

Name: ycdD [H]

Synonym: STM2704

Alternate gene names: 16766017

Gene position: 2852997-2853404 (Clockwise)

Preceding gene: 16766016

Following gene: 16766035

Centisome position: 58.73

GC content: 48.77

Gene sequence:

>408_bases
ATGAGCGATTATTATTACAGCTTTAAAGAGAAAGGTTTTTTCTACAAGCCGGATACCGAATCGGGCGATTTCCCGACTGA
TCTAATTCCTCTGACTGATGAACATTACCATGGACTTATGCAGGGTCAGGTGGACGGAAAATATATTGAGCACAGGAAAG
GAGGCCCGGTACTGGTTGAGCATCGCGAATATACGCCTGAAGAACTGGTTGCACAGGCTGAATCCAGAAAAGCGGAACTT
CTTGCTGAGGCAGAGTCAGTCATTGCGCCACTGGCGCGAGCGGTAAAATTAAAAATGGCTACAGATGAGGAAATCAAGCG
GCTGGAGGCATGGGAACTCTACAGCGTACTGGTAAACCGGGTGGATACCTCAAACCCTGACTGGCCGGATAAGCCAGTCA
GCCAGTAG

Upstream 100 bases:

>100_bases
GAGTAAAAGCCAGTTTTTTGCCGCAACTAAAGCATCAACAGACGGAAATGTCGTAAATGGCTATCCTGTAGCCTGGTTTG
CGATCGGGAGATAATTATCA

Downstream 100 bases:

>100_bases
TCGTTATTGTGGTAATGCAGGCCACCTGATTGCGGTGAAGGTGGCCTCATCTGAAACGTCTGTTAAGTCAAGCGATTTAA
GAACATTGATATAGTTCATC

Product: tail fiber assembly-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 135; Mature: 134

Protein sequence:

>135_residues
MSDYYYSFKEKGFFYKPDTESGDFPTDLIPLTDEHYHGLMQGQVDGKYIEHRKGGPVLVEHREYTPEELVAQAESRKAEL
LAEAESVIAPLARAVKLKMATDEEIKRLEAWELYSVLVNRVDTSNPDWPDKPVSQ

Sequences:

>Translated_135_residues
MSDYYYSFKEKGFFYKPDTESGDFPTDLIPLTDEHYHGLMQGQVDGKYIEHRKGGPVLVEHREYTPEELVAQAESRKAEL
LAEAESVIAPLARAVKLKMATDEEIKRLEAWELYSVLVNRVDTSNPDWPDKPVSQ
>Mature_134_residues
SDYYYSFKEKGFFYKPDTESGDFPTDLIPLTDEHYHGLMQGQVDGKYIEHRKGGPVLVEHREYTPEELVAQAESRKAELL
AEAESVIAPLARAVKLKMATDEEIKRLEAWELYSVLVNRVDTSNPDWPDKPVSQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tfa family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003458 [H]

Pfam domain/function: PF02413 Caudo_TAP [H]

EC number: NA

Molecular weight: Translated: 15492; Mature: 15361

Theoretical pI: Translated: 4.56; Mature: 4.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDYYYSFKEKGFFYKPDTESGDFPTDLIPLTDEHYHGLMQGQVDGKYIEHRKGGPVLVE
CCCCCCCHHCCCCEECCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEEECCCCCCEEEE
HREYTPEELVAQAESRKAELLAEAESVIAPLARAVKLKMATDEEIKRLEAWELYSVLVNR
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
VDTSNPDWPDKPVSQ
HCCCCCCCCCCCCCC
>Mature Secondary Structure 
SDYYYSFKEKGFFYKPDTESGDFPTDLIPLTDEHYHGLMQGQVDGKYIEHRKGGPVLVE
CCCCCCHHCCCCEECCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEEECCCCCCEEEE
HREYTPEELVAQAESRKAELLAEAESVIAPLARAVKLKMATDEEIKRLEAWELYSVLVNR
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
VDTSNPDWPDKPVSQ
HCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677609; 1602967; 7920643 [H]