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The map label for this gene is ydcM [C]

Identifier: 16765920

GI number: 16765920

Start: 2748177

End: 2749427

Strand: Direct

Name: ydcM [C]

Synonym: STM2599

Alternate gene names: 16765920

Gene position: 2748177-2749427 (Clockwise)

Preceding gene: 16765906

Following gene: 16765931

Centisome position: 56.58

GC content: 53.72

Gene sequence:

>1251_bases
GTGTTTGCTCATCAGAATGCCTCCTTTCCTCCCCGGCCTGAAGGCCGGGGAGGAAAGGAGGCGGTTTTCCGGCTAACTGT
CTTTTGCATAATCACATTTTCCTCTTTAATATGTGAAGCCATGAAACGCGCATATAAATACCGGTTTTACCCCACGACTG
AGCAGGCTGAGCTTTTAGCTCAGACGTTCGGTTGTGTGCGTTTCGTCTACAACTCCATCCTCCGCTGGCGTACCGATGCG
TACTACGAGCGAAAGGAAAAGATCGGTTACCTACAGGCCAACGCTCGCCTTACGGCGCTGAAAAAGGAGCCAGAATTTGC
CTGGCTTAACGACGTTTCCTGCGTTCCCCTCCAGCAGTCTTTGCGCCACCAACAAACCGCCTTTGCTAACTTCTTCGCCG
GACGGGCTGCATATCCGGCTTTCAAAAGCAAACGGCACAAGCAGGCGGCTGAGTTCACTGCGAGCGCGTTTAAATACCGC
GACGGCAAGCTGTACATGGCAAAGAACAAAATCCCCTTAGACGTGCGCTGGAGTCGTCCGCTGCCGTCCGTGCCGTCTAC
CGTCACCATTTCCAAAGATGCCGCAGGGCGGTACTTTGTTTCGTGCCTTTGCGAATTTGAACCCGCATCACTGCCGATCA
CCTCTTCAATGGTCGGCATTGATGTTGGTTTAAAAGATTTGTTCGTCACCGATACCGGATTCAGGTCCGGCAATCCCCGC
CATACCGCTAAATACGCGGCTCGCCTGGCACTACTCCAGCGCCGGTTAAGCAAAAAGGCCAAAGGCTCAAAGAACCGCGC
CAAAGCCCACTTAAAGGTAGCCCGACTCCACGCGAAAATTGCTGATTGCCGACTGGATGCCCTGCACAAGGCCACCCGCA
AACTGATTAACGATAACCAAGTTGTATGCGTCGAATCCCTGAAAGTGAGGAACATGATCCGCAACCCGTCGCTATCCAAA
GCAATAGCAGACGCGAGCTGGGGCGAACTTGTGCGCCAGCTCCGGTACAAAGGCGAATGGGCGGGGCGGTCAGTGGTAGC
CATTGACCAGTTTTTCCCGTCCTCAAAACGCTGTAGCTGTTGCGGTTTCATCATGAAAAAAATGCCTCTTGATGTTCGTA
AATGGCAGTGCCCTGAGTGCGGAACTGACCACGACCGGGACGTTAACGCGGCACGTAATATCAAAGCTGCCGGGCTGGCA
GTGTTAGCCCACGGAGAGCCTGTAAATCCTGAATCGCTCAAAGCGGCTTAG

Upstream 100 bases:

>100_bases
AATCTTCCTGTTCTACGAAAGCAGGAAGTCCATCAAAAAGAGTGACAGGTGCGCCAGTCACGGATTCCAGCTTTTCCAGA
ACGGCCCGGCGGATTAATGT

Downstream 100 bases:

>100_bases
ATTCGGCTCGTTGAAGTGGGAATCCCCGTCCTTCAGGGCGGGGAGCAGTCAACGTGAAAGATAAAGCCTCAGTTGTTGTT
TCAGGGCATACCCCAGTTGC

Product: virulence protein

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 416; Mature: 416

Protein sequence:

>416_residues
MFAHQNASFPPRPEGRGGKEAVFRLTVFCIITFSSLICEAMKRAYKYRFYPTTEQAELLAQTFGCVRFVYNSILRWRTDA
YYERKEKIGYLQANARLTALKKEPEFAWLNDVSCVPLQQSLRHQQTAFANFFAGRAAYPAFKSKRHKQAAEFTASAFKYR
DGKLYMAKNKIPLDVRWSRPLPSVPSTVTISKDAAGRYFVSCLCEFEPASLPITSSMVGIDVGLKDLFVTDTGFRSGNPR
HTAKYAARLALLQRRLSKKAKGSKNRAKAHLKVARLHAKIADCRLDALHKATRKLINDNQVVCVESLKVRNMIRNPSLSK
AIADASWGELVRQLRYKGEWAGRSVVAIDQFFPSSKRCSCCGFIMKKMPLDVRKWQCPECGTDHDRDVNAARNIKAAGLA
VLAHGEPVNPESLKAA

Sequences:

>Translated_416_residues
MFAHQNASFPPRPEGRGGKEAVFRLTVFCIITFSSLICEAMKRAYKYRFYPTTEQAELLAQTFGCVRFVYNSILRWRTDA
YYERKEKIGYLQANARLTALKKEPEFAWLNDVSCVPLQQSLRHQQTAFANFFAGRAAYPAFKSKRHKQAAEFTASAFKYR
DGKLYMAKNKIPLDVRWSRPLPSVPSTVTISKDAAGRYFVSCLCEFEPASLPITSSMVGIDVGLKDLFVTDTGFRSGNPR
HTAKYAARLALLQRRLSKKAKGSKNRAKAHLKVARLHAKIADCRLDALHKATRKLINDNQVVCVESLKVRNMIRNPSLSK
AIADASWGELVRQLRYKGEWAGRSVVAIDQFFPSSKRCSCCGFIMKKMPLDVRKWQCPECGTDHDRDVNAARNIKAAGLA
VLAHGEPVNPESLKAA
>Mature_416_residues
MFAHQNASFPPRPEGRGGKEAVFRLTVFCIITFSSLICEAMKRAYKYRFYPTTEQAELLAQTFGCVRFVYNSILRWRTDA
YYERKEKIGYLQANARLTALKKEPEFAWLNDVSCVPLQQSLRHQQTAFANFFAGRAAYPAFKSKRHKQAAEFTASAFKYR
DGKLYMAKNKIPLDVRWSRPLPSVPSTVTISKDAAGRYFVSCLCEFEPASLPITSSMVGIDVGLKDLFVTDTGFRSGNPR
HTAKYAARLALLQRRLSKKAKGSKNRAKAHLKVARLHAKIADCRLDALHKATRKLINDNQVVCVESLKVRNMIRNPSLSK
AIADASWGELVRQLRYKGEWAGRSVVAIDQFFPSSKRCSCCGFIMKKMPLDVRKWQCPECGTDHDRDVNAARNIKAAGLA
VLAHGEPVNPESLKAA

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=369, Percent_Identity=35.7723577235772, Blast_Score=184, Evalue=7e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 46842; Mature: 46842

Theoretical pI: Translated: 10.49; Mature: 10.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFAHQNASFPPRPEGRGGKEAVFRLTVFCIITFSSLICEAMKRAYKYRFYPTTEQAELLA
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHH
QTFGCVRFVYNSILRWRTDAYYERKEKIGYLQANARLTALKKEPEFAWLNDVSCVPLQQS
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCEEEEEECCCCEEECCCCCCCCHHHH
LRHQQTAFANFFAGRAAYPAFKSKRHKQAAEFTASAFKYRDGKLYMAKNKIPLDVRWSRP
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHEECCCEEEEECCCCCEEEEECCC
LPSVPSTVTISKDAAGRYFVSCLCEFEPASLPITSSMVGIDVGLKDLFVTDTGFRSGNPR
CCCCCCEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCEEEECCCHHEEEECCCCCCCCCC
HTAKYAARLALLQRRLSKKAKGSKNRAKAHLKVARLHAKIADCRLDALHKATRKLINDNQ
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
VVCVESLKVRNMIRNPSLSKAIADASWGELVRQLRYKGEWAGRSVVAIDQFFPSSKRCSC
EEEEHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHCCCCCCCEEEEEHHHCCCCCCCHH
CGFIMKKMPLDVRKWQCPECGTDHDRDVNAARNIKAAGLAVLAHGEPVNPESLKAA
HHHHHHHCCCCHHCCCCCCCCCCCCCCCHHHHCCCCCCEEEEECCCCCCHHHCCCC
>Mature Secondary Structure
MFAHQNASFPPRPEGRGGKEAVFRLTVFCIITFSSLICEAMKRAYKYRFYPTTEQAELLA
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHH
QTFGCVRFVYNSILRWRTDAYYERKEKIGYLQANARLTALKKEPEFAWLNDVSCVPLQQS
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCEEEEEECCCCEEECCCCCCCCHHHH
LRHQQTAFANFFAGRAAYPAFKSKRHKQAAEFTASAFKYRDGKLYMAKNKIPLDVRWSRP
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHEECCCEEEEECCCCCEEEEECCC
LPSVPSTVTISKDAAGRYFVSCLCEFEPASLPITSSMVGIDVGLKDLFVTDTGFRSGNPR
CCCCCCEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCEEEECCCHHEEEECCCCCCCCCC
HTAKYAARLALLQRRLSKKAKGSKNRAKAHLKVARLHAKIADCRLDALHKATRKLINDNQ
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
VVCVESLKVRNMIRNPSLSKAIADASWGELVRQLRYKGEWAGRSVVAIDQFFPSSKRCSC
EEEEHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHCCCCCCCEEEEEHHHCCCCCCCHH
CGFIMKKMPLDVRKWQCPECGTDHDRDVNAARNIKAAGLAVLAHGEPVNPESLKAA
HHHHHHHCCCCHHCCCCCCCCCCCCCCCHHHHCCCCCCEEEEECCCCCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]