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The map label for this gene is ycdD [H]

Identifier: 16765907

GI number: 16765907

Start: 2733337

End: 2733915

Strand: Reverse

Name: ycdD [H]

Synonym: STM2586

Alternate gene names: 16765907

Gene position: 2733915-2733337 (Counterclockwise)

Preceding gene: 16765908

Following gene: 16765903

Centisome position: 56.28

GC content: 47.84

Gene sequence:

>579_bases
ATGACGTTTAAAATGAGCGATACCCCGCAGACAATTAAAATTTTTAATCTGCGTTCAGATACAAACGAATTTATTGGTGC
AGGTGATGCATATATCCCGCCACACACTGGATTACCGGCAAATTGTACGGATATTGCGCCCCCGGATATTCCAGCCAGTC
ATATTGCGATATTTGATGCTGAAACCGGAACGTGGAGTCTGCATGAGGACCACCGCGGCGAGACGGTTTACGACACAACA
ACCGGCAATCAGGTTTATATTTCCGCTCCCGGCCCGCTACCTGAAAATGTCACATCAGTTTCACCAGACGGTGAATACCA
GAAATGGGATGGTAAGGCGTGGGTGAAGGATGAAGCTGCGGAAACAGCGGCCAGACTTCGTGAAGCTGAAGGGACCAAAA
GCCGTCTTTTGCAAATGGCATCTGAAAAAATCGCGCCGTTACAGGATGCAGTGGATCTGGACGAAGCAACCGATAAAGAA
AAAGCTTCTCTTCTGGCATGGAGAAAGTACCGGGTACAGGTAAACCGTGTTGATACTTTAAAGCCTGTCTGGCCGGAGAA
ACCAGCCAGTAGTTTATAA

Upstream 100 bases:

>100_bases
GTTGATGATATTTATATTGGTGCGCATAGCCATGCTGTTTTCCTTAGCCCCAATTCTCATGGAAAGCACCTGAAACCTGA
ATATTTATCCGGAGTAAAAA

Downstream 100 bases:

>100_bases
TTTGTCAGGAAAGCTCAGGCCTTATTTATAGCAAATATGAAGAAGACCTGTCTGTCATAACTGATATGGTTACTGGTTAG
TATATTAAATTTATACTCAA

Product: phage tail assembly-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 191

Protein sequence:

>192_residues
MTFKMSDTPQTIKIFNLRSDTNEFIGAGDAYIPPHTGLPANCTDIAPPDIPASHIAIFDAETGTWSLHEDHRGETVYDTT
TGNQVYISAPGPLPENVTSVSPDGEYQKWDGKAWVKDEAAETAARLREAEGTKSRLLQMASEKIAPLQDAVDLDEATDKE
KASLLAWRKYRVQVNRVDTLKPVWPEKPASSL

Sequences:

>Translated_192_residues
MTFKMSDTPQTIKIFNLRSDTNEFIGAGDAYIPPHTGLPANCTDIAPPDIPASHIAIFDAETGTWSLHEDHRGETVYDTT
TGNQVYISAPGPLPENVTSVSPDGEYQKWDGKAWVKDEAAETAARLREAEGTKSRLLQMASEKIAPLQDAVDLDEATDKE
KASLLAWRKYRVQVNRVDTLKPVWPEKPASSL
>Mature_191_residues
TFKMSDTPQTIKIFNLRSDTNEFIGAGDAYIPPHTGLPANCTDIAPPDIPASHIAIFDAETGTWSLHEDHRGETVYDTTT
GNQVYISAPGPLPENVTSVSPDGEYQKWDGKAWVKDEAAETAARLREAEGTKSRLLQMASEKIAPLQDAVDLDEATDKEK
ASLLAWRKYRVQVNRVDTLKPVWPEKPASSL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tfa family [H]

Homologues:

Organism=Escherichia coli, GI1787637, Length=179, Percent_Identity=65.3631284916201, Blast_Score=252, Evalue=1e-68,
Organism=Escherichia coli, GI2367120, Length=179, Percent_Identity=64.804469273743, Blast_Score=250, Evalue=5e-68,
Organism=Escherichia coli, GI1787402, Length=182, Percent_Identity=34.6153846153846, Blast_Score=99, Evalue=1e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003458 [H]

Pfam domain/function: PF02413 Caudo_TAP [H]

EC number: NA

Molecular weight: Translated: 21167; Mature: 21035

Theoretical pI: Translated: 4.61; Mature: 4.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFKMSDTPQTIKIFNLRSDTNEFIGAGDAYIPPHTGLPANCTDIAPPDIPASHIAIFDA
CCCCCCCCCCEEEEEEECCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC
ETGTWSLHEDHRGETVYDTTTGNQVYISAPGPLPENVTSVSPDGEYQKWDGKAWVKDEAA
CCCEEECCCCCCCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCEECCCCEEECHHHH
ETAARLREAEGTKSRLLQMASEKIAPLQDAVDLDEATDKEKASLLAWRKYRVQVNRVDTL
HHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHEEEEEEECCCCC
KPVWPEKPASSL
CCCCCCCCCCCC
>Mature Secondary Structure 
TFKMSDTPQTIKIFNLRSDTNEFIGAGDAYIPPHTGLPANCTDIAPPDIPASHIAIFDA
CCCCCCCCCEEEEEEECCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC
ETGTWSLHEDHRGETVYDTTTGNQVYISAPGPLPENVTSVSPDGEYQKWDGKAWVKDEAA
CCCEEECCCCCCCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCEECCCCEEECHHHH
ETAARLREAEGTKSRLLQMASEKIAPLQDAVDLDEATDKEKASLLAWRKYRVQVNRVDTL
HHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHEEEEEEECCCCC
KPVWPEKPASSL
CCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677609; 1602967; 7920643 [H]