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The map label for this gene is yjdL [H]

Identifier: 16765880

GI number: 16765880

Start: 2702150

End: 2703610

Strand: Direct

Name: yjdL [H]

Synonym: STM2560

Alternate gene names: 16765880

Gene position: 2702150-2703610 (Clockwise)

Preceding gene: 16765879

Following gene: 16765886

Centisome position: 55.63

GC content: 56.54

Gene sequence:

>1461_bases
ATGAAAACACCCTCACAACCGCGCGCGATTTTTTACATCGTGGCGATTCAAATTTGGGAATACTTCAGCTTTTACGGCAT
GCGTGCCTTACTCATCCTTTATCTTACCCACCAGCTTGGTTTTAATGACAGCCACGCGATCAACCTCTTCAGCGCCTACG
CCTCTTTAGTTTACGTTACCCCTATTCTTGGCGGCTGGCTTGCCGACCGCCTGCTTGGCAACCGCGTGGCGGTTATCACC
GGCGCCCTGTTGATGACGCTGGGTCATGTGGTATTGGGCTTAGAATCTGATTCAACGTTGAGTTTATATGCGGCGCTGGC
CATTATTATCTGCGGCTACGGCTTGTTTAAATCCAATATTAGCTGTCTGCTGGGCGAACTTTACGCCCCTGATGACAACC
GCCGCGACGGGGGATTCTCGCTGCTCTACGCCGCCGGGAATATTGGATCGATAGCCGCGCCGATCGCCTGTGGTCTGGCG
GCGCAGTGGTATGGCTGGCATGTCGGCTTTGCGCTGGCGGGCGTGGGAATGTTCATCGGCCTGCTCATCTTTTTAAGCGG
TCATCGCCACTTTCAGCAGACGCGCGGTGTTAATCGCCCCGCGCTGCGGGCGGTTAAATTCGCCCTTCCAACCTGGGGTT
GGCTGGTATTAATGCTGTGTATCGCACCGGTATTCTTCACCCTCCTGCTGGAAAATAACTGGTCTGGCTATGTGCTGGCC
ATTGTCTGCGTCTTCGCGGCGCAACTTATCGCCCGTATTATGGTTAAATTTCCCGAACACCGTCGCGCCTTGTGGCAAAT
CGTTCTGTTAATGATCACCGGCACTCTCTTCTGGGTTCTGGCGCAGCAGGGCGGAAGTTCGATCAGTTTATTCATCGACC
GTTTTGTCAACCGCCACTGGCTAAACATGACCGTCCCCACCGCATTGTTCCAGTCGGTCAATGCGATTGCGGTGATGGCG
GCGGGCGTGGTGCTGGCGTGGCTGAGCAGCCCGAAAGAGAGCGCCCGCTCGGTGCTGCGCGTCTGGCTTAAATTTGCCGT
GGGGCTGGTATTGATGGGCGGCGGTTTTATGCTGCTGGCGCTAAACGCGCATCAGGCCCGGTTAGACGGGCAGGCATCAA
TGGGAATGATGATCGCAGGGCTGGCGCTGATGGGCTTTGCGGAACTGTTTATTGATCCGGTCGCGATGGCGCAAATTACC
CGCCTCAACCTGCCTGGCGTCACGGGCGTACTGACCGGTATTTATATGCTGGCGACCGGCGCGGTCGCTAACTGGCTGGC
TGGCGTGGTCGCGCAACAAACCACGGAATCGCAAATTAGTGATACGGCGGTAGCCGCCTACGGACACTTTTTCTCGCAAA
TGGGCGAGTGGACGCTAAGTTGCGTGGCGCTGATCGTCGCCATTGTCGGCCTGAGATGGGTTTGCACCCGGACTACATCG
GCGCTACCGCAGGGCGATTAA

Upstream 100 bases:

>100_bases
GACGGACGTTACACCGTTAAGGTGCTGAAAGAAAATACGAAATAAGTACCAAAGGGAAGTGGCTTGCCACTTCCCTTTTT
TCACGCAGCAAGGAGACTTT

Downstream 100 bases:

>100_bases
ACGGTGGTTCGCTGCCCACAAGGAGGAGACGGGCAGCGAATCGGCACATCAGATAGCCGCGTCGTCTTCTTCGCCAGTAC
GGATACGAATAACGCGGGCG

Product: di-/tripeptide transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 486; Mature: 486

Protein sequence:

>486_residues
MKTPSQPRAIFYIVAIQIWEYFSFYGMRALLILYLTHQLGFNDSHAINLFSAYASLVYVTPILGGWLADRLLGNRVAVIT
GALLMTLGHVVLGLESDSTLSLYAALAIIICGYGLFKSNISCLLGELYAPDDNRRDGGFSLLYAAGNIGSIAAPIACGLA
AQWYGWHVGFALAGVGMFIGLLIFLSGHRHFQQTRGVNRPALRAVKFALPTWGWLVLMLCIAPVFFTLLLENNWSGYVLA
IVCVFAAQLIARIMVKFPEHRRALWQIVLLMITGTLFWVLAQQGGSSISLFIDRFVNRHWLNMTVPTALFQSVNAIAVMA
AGVVLAWLSSPKESARSVLRVWLKFAVGLVLMGGGFMLLALNAHQARLDGQASMGMMIAGLALMGFAELFIDPVAMAQIT
RLNLPGVTGVLTGIYMLATGAVANWLAGVVAQQTTESQISDTAVAAYGHFFSQMGEWTLSCVALIVAIVGLRWVCTRTTS
ALPQGD

Sequences:

>Translated_486_residues
MKTPSQPRAIFYIVAIQIWEYFSFYGMRALLILYLTHQLGFNDSHAINLFSAYASLVYVTPILGGWLADRLLGNRVAVIT
GALLMTLGHVVLGLESDSTLSLYAALAIIICGYGLFKSNISCLLGELYAPDDNRRDGGFSLLYAAGNIGSIAAPIACGLA
AQWYGWHVGFALAGVGMFIGLLIFLSGHRHFQQTRGVNRPALRAVKFALPTWGWLVLMLCIAPVFFTLLLENNWSGYVLA
IVCVFAAQLIARIMVKFPEHRRALWQIVLLMITGTLFWVLAQQGGSSISLFIDRFVNRHWLNMTVPTALFQSVNAIAVMA
AGVVLAWLSSPKESARSVLRVWLKFAVGLVLMGGGFMLLALNAHQARLDGQASMGMMIAGLALMGFAELFIDPVAMAQIT
RLNLPGVTGVLTGIYMLATGAVANWLAGVVAQQTTESQISDTAVAAYGHFFSQMGEWTLSCVALIVAIVGLRWVCTRTTS
ALPQGD
>Mature_486_residues
MKTPSQPRAIFYIVAIQIWEYFSFYGMRALLILYLTHQLGFNDSHAINLFSAYASLVYVTPILGGWLADRLLGNRVAVIT
GALLMTLGHVVLGLESDSTLSLYAALAIIICGYGLFKSNISCLLGELYAPDDNRRDGGFSLLYAAGNIGSIAAPIACGLA
AQWYGWHVGFALAGVGMFIGLLIFLSGHRHFQQTRGVNRPALRAVKFALPTWGWLVLMLCIAPVFFTLLLENNWSGYVLA
IVCVFAAQLIARIMVKFPEHRRALWQIVLLMITGTLFWVLAQQGGSSISLFIDRFVNRHWLNMTVPTALFQSVNAIAVMA
AGVVLAWLSSPKESARSVLRVWLKFAVGLVLMGGGFMLLALNAHQARLDGQASMGMMIAGLALMGFAELFIDPVAMAQIT
RLNLPGVTGVLTGIYMLATGAVANWLAGVVAQQTTESQISDTAVAAYGHFFSQMGEWTLSCVALIVAIVGLRWVCTRTTS
ALPQGD

Specific function: Probable proton-dependent permease that transports di- and tripeptides. Shows significantly higher specificity towards dipeptides [H]

COG id: COG3104

COG function: function code E; Dipeptide/tripeptide permease

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PTR2/POT transporter (TC 2.A.17) family [H]

Homologues:

Organism=Homo sapiens, GI4827008, Length=232, Percent_Identity=26.7241379310345, Blast_Score=93, Evalue=4e-19,
Organism=Homo sapiens, GI226371746, Length=303, Percent_Identity=28.0528052805281, Blast_Score=85, Evalue=1e-16,
Organism=Homo sapiens, GI226371748, Length=296, Percent_Identity=26.3513513513513, Blast_Score=70, Evalue=6e-12,
Organism=Escherichia coli, GI1790572, Length=487, Percent_Identity=80.082135523614, Blast_Score=787, Evalue=0.0,
Organism=Escherichia coli, GI1786927, Length=474, Percent_Identity=58.4388185654008, Blast_Score=549, Evalue=1e-157,
Organism=Escherichia coli, GI1787922, Length=462, Percent_Identity=30.3030303030303, Blast_Score=191, Evalue=9e-50,
Organism=Escherichia coli, GI1789911, Length=472, Percent_Identity=28.3898305084746, Blast_Score=168, Evalue=8e-43,
Organism=Caenorhabditis elegans, GI17569141, Length=310, Percent_Identity=25.8064516129032, Blast_Score=79, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI71987453, Length=184, Percent_Identity=30.4347826086957, Blast_Score=78, Evalue=9e-15,
Organism=Drosophila melanogaster, GI24639583, Length=298, Percent_Identity=25.8389261744966, Blast_Score=82, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24639585, Length=298, Percent_Identity=25.8389261744966, Blast_Score=81, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24639581, Length=298, Percent_Identity=25.8389261744966, Blast_Score=81, Evalue=1e-15,
Organism=Drosophila melanogaster, GI28571102, Length=207, Percent_Identity=28.5024154589372, Blast_Score=73, Evalue=5e-13,
Organism=Drosophila melanogaster, GI28571100, Length=207, Percent_Identity=28.5024154589372, Blast_Score=73, Evalue=5e-13,
Organism=Drosophila melanogaster, GI28571098, Length=207, Percent_Identity=27.536231884058, Blast_Score=73, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR016196
- InterPro:   IPR000109
- InterPro:   IPR005279
- InterPro:   IPR018456 [H]

Pfam domain/function: PF00854 PTR2 [H]

EC number: NA

Molecular weight: Translated: 52735; Mature: 52735

Theoretical pI: Translated: 8.98; Mature: 8.98

Prosite motif: PS50850 MFS ; PS01022 PTR2_1 ; PS01023 PTR2_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTPSQPRAIFYIVAIQIWEYFSFYGMRALLILYLTHQLGFNDSHAINLFSAYASLVYVT
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
PILGGWLADRLLGNRVAVITGALLMTLGHVVLGLESDSTLSLYAALAIIICGYGLFKSNI
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHH
SCLLGELYAPDDNRRDGGFSLLYAAGNIGSIAAPIACGLAAQWYGWHVGFALAGVGMFIG
HHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLIFLSGHRHFQQTRGVNRPALRAVKFALPTWGWLVLMLCIAPVFFTLLLENNWSGYVLA
HHHHHHCCHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
IVCVFAAQLIARIMVKFPEHRRALWQIVLLMITGTLFWVLAQQGGSSISLFIDRFVNRHW
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
LNMTVPTALFQSVNAIAVMAAGVVLAWLSSPKESARSVLRVWLKFAVGLVLMGGGFMLLA
CCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
LNAHQARLDGQASMGMMIAGLALMGFAELFIDPVAMAQITRLNLPGVTGVLTGIYMLATG
ECCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
AVANWLAGVVAQQTTESQISDTAVAAYGHFFSQMGEWTLSCVALIVAIVGLRWVCTRTTS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
ALPQGD
CCCCCC
>Mature Secondary Structure
MKTPSQPRAIFYIVAIQIWEYFSFYGMRALLILYLTHQLGFNDSHAINLFSAYASLVYVT
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
PILGGWLADRLLGNRVAVITGALLMTLGHVVLGLESDSTLSLYAALAIIICGYGLFKSNI
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHH
SCLLGELYAPDDNRRDGGFSLLYAAGNIGSIAAPIACGLAAQWYGWHVGFALAGVGMFIG
HHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLIFLSGHRHFQQTRGVNRPALRAVKFALPTWGWLVLMLCIAPVFFTLLLENNWSGYVLA
HHHHHHCCHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
IVCVFAAQLIARIMVKFPEHRRALWQIVLLMITGTLFWVLAQQGGSSISLFIDRFVNRHW
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
LNMTVPTALFQSVNAIAVMAAGVVLAWLSSPKESARSVLRVWLKFAVGLVLMGGGFMLLA
CCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
LNAHQARLDGQASMGMMIAGLALMGFAELFIDPVAMAQITRLNLPGVTGVLTGIYMLATG
ECCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
AVANWLAGVVAQQTTESQISDTAVAAYGHFFSQMGEWTLSCVALIVAIVGLRWVCTRTTS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
ALPQGD
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]