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The map label for this gene is rocC [H]

Identifier: 16765684

GI number: 16765684

Start: 2467178

End: 2468584

Strand: Reverse

Name: rocC [H]

Synonym: STM2357

Alternate gene names: 16765684

Gene position: 2468584-2467178 (Counterclockwise)

Preceding gene: 16765685

Following gene: 16765683

Centisome position: 50.82

GC content: 53.09

Gene sequence:

>1407_bases
ATGGATACCCTGCAACAATCTCCGCCAGCAGAGCCTGAAGGCGGTCTGCGGCGTAACCTGAAGAAGCGGCACCTGCTGAT
GATGTCGCTGGGCGGCACGATTGGCACCGGCTTATTTATCGGCATTGCCGAACCGTTAAGCAGCGTCGGGCCGGCGGGAA
CCTTACTGGCCTATCTGTTTGCCGGAACCATTATGCTGGCGACGATGATGTGTCTTGGCGAATTATCATGCGCCTTTCCT
CACTCCGGTTCATTTCAACATTACGCGCTGATGTTTATGCCGTCACCTTGCTGGAGCTATACCATTGGCTGGCTTTACTG
GTTTAGCTGGGTCTTTTCCCTGGCGGCCGACCTCACTGCCGCAGGGTTTATTGCTCACCAGTTTTTCCCCGCGGTTCCGG
TATATATGTTCTGCCTGGCGATTCTGCTCATCCTGACGGCCATCAATCTCACCTCCGCAAAAAGTTTTGGCGAATGCGAA
TACTGGCTTTCGGCCATTAAGGTTTTCGCGATCGTGCTGTTTATTTGCGCGGGCGGGGTTATGATCTACTCGCTAATGGG
CCATAGTGACTGGCACCCGACGTTAAAAACAGACGGAATGTGGTTTCCCCACGGTTGGGAGCAAATTGTGGTTTATATGA
CGATCGTGATTTACTCCTTCCAGGGGGTGGAACTGGTAGGAAATGCGGCAGGGGAGACCGAATCGCCGCACATTATTTTA
CCGAAAGTGATCCTGGGGATCGGTCTCAGAATCATTTTGTTTTACGGCCTGGCGATTGCGGTGCTGGCGCTGGTCTATCC
GCATGAACTGACGCCAAATGGACAAAGTCCCTTTGTATGGGTATTCTCCCACGCGGGCATTCCGGGGGCGGATACGCTGA
TGACGCTGGTGATCTTTTCCGCCGCGGTTTCTGCCGCTAACTCGGCCATTTACGCCAGTTCGCGTATGCTGTGGTCTATG
GCGGGCGATCGCTTTGCGCCAGCCTGCTTTGGTAAAACGAACGGCGGCGGCGTGCCGGTGTATGCTATTTTAATCACGGC
CTTGTTGGCGTTAGTGTCGTTGCTGACCCGCTATATTCCCGCACAGCAATTTTATTTATATCTGATCGCCAGTACCGGGC
AGGTGGGTTGCCTGGCATGGATAACCATCGGATGGTGCCAGTATCGCTTCCGACAATCGGTGCGTAATGGAACGTACGCC
AGCGATTTGCTACGCTATCGATCGCCGCTTTTCCCCTGGACGGCCCGATTTGTCATTATCACCAATTTTGCCATTATGGT
CGGCACCTGGTTTAGTGAGCAGGGGGTAGTGATAATGTTGGTTGAGCTGGCTTTTATGATAGGGATTCTTTTGTCATGGT
ATCTCTTCAGACCCACTTTGAGCCGATTACGTAACACAGTGGGATGA

Upstream 100 bases:

>100_bases
CCAGACCAAAGGCGTCGCCTGGAGGTTTACGCGTTAACGCATAACCGCCGCGGCTATGTCGCGGCGGCATCTTTGACCTC
ACGAAAGACAGGGAGTAACG

Downstream 100 bases:

>100_bases
ACGGCGCTCGTAAACGGTAAGAGAACATGAAACGACTCATTGTAGGAATTAGCGGCGCCAGCGGAGCGATTTATGGCGTG
CGCTTATTACAAATTTTGCG

Product: amino acid transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 468; Mature: 468

Protein sequence:

>468_residues
MDTLQQSPPAEPEGGLRRNLKKRHLLMMSLGGTIGTGLFIGIAEPLSSVGPAGTLLAYLFAGTIMLATMMCLGELSCAFP
HSGSFQHYALMFMPSPCWSYTIGWLYWFSWVFSLAADLTAAGFIAHQFFPAVPVYMFCLAILLILTAINLTSAKSFGECE
YWLSAIKVFAIVLFICAGGVMIYSLMGHSDWHPTLKTDGMWFPHGWEQIVVYMTIVIYSFQGVELVGNAAGETESPHIIL
PKVILGIGLRIILFYGLAIAVLALVYPHELTPNGQSPFVWVFSHAGIPGADTLMTLVIFSAAVSAANSAIYASSRMLWSM
AGDRFAPACFGKTNGGGVPVYAILITALLALVSLLTRYIPAQQFYLYLIASTGQVGCLAWITIGWCQYRFRQSVRNGTYA
SDLLRYRSPLFPWTARFVIITNFAIMVGTWFSEQGVVIMLVELAFMIGILLSWYLFRPTLSRLRNTVG

Sequences:

>Translated_468_residues
MDTLQQSPPAEPEGGLRRNLKKRHLLMMSLGGTIGTGLFIGIAEPLSSVGPAGTLLAYLFAGTIMLATMMCLGELSCAFP
HSGSFQHYALMFMPSPCWSYTIGWLYWFSWVFSLAADLTAAGFIAHQFFPAVPVYMFCLAILLILTAINLTSAKSFGECE
YWLSAIKVFAIVLFICAGGVMIYSLMGHSDWHPTLKTDGMWFPHGWEQIVVYMTIVIYSFQGVELVGNAAGETESPHIIL
PKVILGIGLRIILFYGLAIAVLALVYPHELTPNGQSPFVWVFSHAGIPGADTLMTLVIFSAAVSAANSAIYASSRMLWSM
AGDRFAPACFGKTNGGGVPVYAILITALLALVSLLTRYIPAQQFYLYLIASTGQVGCLAWITIGWCQYRFRQSVRNGTYA
SDLLRYRSPLFPWTARFVIITNFAIMVGTWFSEQGVVIMLVELAFMIGILLSWYLFRPTLSRLRNTVG
>Mature_468_residues
MDTLQQSPPAEPEGGLRRNLKKRHLLMMSLGGTIGTGLFIGIAEPLSSVGPAGTLLAYLFAGTIMLATMMCLGELSCAFP
HSGSFQHYALMFMPSPCWSYTIGWLYWFSWVFSLAADLTAAGFIAHQFFPAVPVYMFCLAILLILTAINLTSAKSFGECE
YWLSAIKVFAIVLFICAGGVMIYSLMGHSDWHPTLKTDGMWFPHGWEQIVVYMTIVIYSFQGVELVGNAAGETESPHIIL
PKVILGIGLRIILFYGLAIAVLALVYPHELTPNGQSPFVWVFSHAGIPGADTLMTLVIFSAAVSAANSAIYASSRMLWSM
AGDRFAPACFGKTNGGGVPVYAILITALLALVSLLTRYIPAQQFYLYLIASTGQVGCLAWITIGWCQYRFRQSVRNGTYA
SDLLRYRSPLFPWTARFVIITNFAIMVGTWFSEQGVVIMLVELAFMIGILLSWYLFRPTLSRLRNTVG

Specific function: Putative transport protein involved in arginine degradative pathway. Probably transports arginine or ornithine [H]

COG id: COG0833

COG function: function code E; Amino acid transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the amino acid-polyamine-organocation (APC) superfamily [H]

Homologues:

Organism=Escherichia coli, GI87081708, Length=467, Percent_Identity=36.4025695931477, Blast_Score=296, Evalue=2e-81,
Organism=Escherichia coli, GI1788480, Length=428, Percent_Identity=37.1495327102804, Blast_Score=266, Evalue=2e-72,
Organism=Escherichia coli, GI48994972, Length=452, Percent_Identity=33.6283185840708, Blast_Score=227, Evalue=1e-60,
Organism=Escherichia coli, GI1789017, Length=419, Percent_Identity=34.8448687350835, Blast_Score=225, Evalue=6e-60,
Organism=Escherichia coli, GI1786302, Length=417, Percent_Identity=33.5731414868106, Blast_Score=224, Evalue=8e-60,
Organism=Escherichia coli, GI87081915, Length=410, Percent_Identity=35.1219512195122, Blast_Score=222, Evalue=4e-59,
Organism=Escherichia coli, GI1786789, Length=417, Percent_Identity=32.1342925659472, Blast_Score=219, Evalue=3e-58,
Organism=Escherichia coli, GI1790653, Length=406, Percent_Identity=33.2512315270936, Blast_Score=214, Evalue=1e-56,
Organism=Escherichia coli, GI1786602, Length=403, Percent_Identity=33.9950372208437, Blast_Score=206, Evalue=3e-54,
Organism=Escherichia coli, GI87082023, Length=332, Percent_Identity=24.3975903614458, Blast_Score=62, Evalue=5e-11,
Organism=Saccharomyces cerevisiae, GI6320772, Length=441, Percent_Identity=31.2925170068027, Blast_Score=218, Evalue=2e-57,
Organism=Saccharomyces cerevisiae, GI6324061, Length=443, Percent_Identity=31.8284424379233, Blast_Score=213, Evalue=7e-56,
Organism=Saccharomyces cerevisiae, GI6324059, Length=437, Percent_Identity=31.8077803203661, Blast_Score=191, Evalue=2e-49,
Organism=Saccharomyces cerevisiae, GI6324553, Length=430, Percent_Identity=27.4418604651163, Blast_Score=182, Evalue=1e-46,
Organism=Saccharomyces cerevisiae, GI6322892, Length=418, Percent_Identity=31.3397129186603, Blast_Score=171, Evalue=2e-43,
Organism=Saccharomyces cerevisiae, GI6324990, Length=463, Percent_Identity=29.3736501079914, Blast_Score=170, Evalue=5e-43,
Organism=Saccharomyces cerevisiae, GI6320717, Length=437, Percent_Identity=24.4851258581236, Blast_Score=155, Evalue=1e-38,
Organism=Saccharomyces cerevisiae, GI6321629, Length=427, Percent_Identity=27.4004683840749, Blast_Score=154, Evalue=2e-38,
Organism=Saccharomyces cerevisiae, GI6324924, Length=451, Percent_Identity=27.7161862527716, Blast_Score=150, Evalue=3e-37,
Organism=Saccharomyces cerevisiae, GI6322967, Length=432, Percent_Identity=28.9351851851852, Blast_Score=148, Evalue=1e-36,
Organism=Saccharomyces cerevisiae, GI6321053, Length=439, Percent_Identity=27.3348519362187, Blast_Score=142, Evalue=1e-34,
Organism=Saccharomyces cerevisiae, GI6319824, Length=434, Percent_Identity=22.3502304147465, Blast_Score=137, Evalue=4e-33,
Organism=Saccharomyces cerevisiae, GI6319543, Length=432, Percent_Identity=22.9166666666667, Blast_Score=130, Evalue=5e-31,
Organism=Saccharomyces cerevisiae, GI6319542, Length=433, Percent_Identity=23.5565819861432, Blast_Score=130, Evalue=6e-31,
Organism=Saccharomyces cerevisiae, GI6320251, Length=449, Percent_Identity=23.162583518931, Blast_Score=127, Evalue=5e-30,
Organism=Saccharomyces cerevisiae, GI6319608, Length=371, Percent_Identity=27.2237196765499, Blast_Score=125, Evalue=1e-29,
Organism=Saccharomyces cerevisiae, GI6324981, Length=440, Percent_Identity=28.8636363636364, Blast_Score=123, Evalue=7e-29,
Organism=Saccharomyces cerevisiae, GI6320364, Length=481, Percent_Identity=22.2453222453222, Blast_Score=87, Evalue=4e-18,
Organism=Drosophila melanogaster, GI24667468, Length=384, Percent_Identity=21.09375, Blast_Score=68, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004841
- InterPro:   IPR002293
- InterPro:   IPR004840 [H]

Pfam domain/function: PF00324 AA_permease [H]

EC number: NA

Molecular weight: Translated: 51481; Mature: 51481

Theoretical pI: Translated: 8.14; Mature: 8.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTLQQSPPAEPEGGLRRNLKKRHLLMMSLGGTIGTGLFIGIAEPLSSVGPAGTLLAYLF
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHH
AGTIMLATMMCLGELSCAFPHSGSFQHYALMFMPSPCWSYTIGWLYWFSWVFSLAADLTA
HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
AGFIAHQFFPAVPVYMFCLAILLILTAINLTSAKSFGECEYWLSAIKVFAIVLFICAGGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
MIYSLMGHSDWHPTLKTDGMWFPHGWEQIVVYMTIVIYSFQGVELVGNAAGETESPHIIL
HHHHHHCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHCCCHHEECCCCCCCCCCCEEH
PKVILGIGLRIILFYGLAIAVLALVYPHELTPNGQSPFVWVFSHAGIPGADTLMTLVIFS
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHH
AAVSAANSAIYASSRMLWSMAGDRFAPACFGKTNGGGVPVYAILITALLALVSLLTRYIP
HHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
AQQFYLYLIASTGQVGCLAWITIGWCQYRFRQSVRNGTYASDLLRYRSPLFPWTARFVII
HHHEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHH
TNFAIMVGTWFSEQGVVIMLVELAFMIGILLSWYLFRPTLSRLRNTVG
HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDTLQQSPPAEPEGGLRRNLKKRHLLMMSLGGTIGTGLFIGIAEPLSSVGPAGTLLAYLF
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHH
AGTIMLATMMCLGELSCAFPHSGSFQHYALMFMPSPCWSYTIGWLYWFSWVFSLAADLTA
HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
AGFIAHQFFPAVPVYMFCLAILLILTAINLTSAKSFGECEYWLSAIKVFAIVLFICAGGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
MIYSLMGHSDWHPTLKTDGMWFPHGWEQIVVYMTIVIYSFQGVELVGNAAGETESPHIIL
HHHHHHCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHCCCHHEECCCCCCCCCCCEEH
PKVILGIGLRIILFYGLAIAVLALVYPHELTPNGQSPFVWVFSHAGIPGADTLMTLVIFS
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHH
AAVSAANSAIYASSRMLWSMAGDRFAPACFGKTNGGGVPVYAILITALLALVSLLTRYIP
HHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
AQQFYLYLIASTGQVGCLAWITIGWCQYRFRQSVRNGTYASDLLRYRSPLFPWTARFVII
HHHEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHH
TNFAIMVGTWFSEQGVVIMLVELAFMIGILLSWYLFRPTLSRLRNTVG
HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]