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The map label for this gene is arnD [H]

Identifier: 16765627

GI number: 16765627

Start: 2408072

End: 2408971

Strand: Direct

Name: arnD [H]

Synonym: STM2300

Alternate gene names: 16765627

Gene position: 2408072-2408971 (Clockwise)

Preceding gene: 16765626

Following gene: 16765628

Centisome position: 49.58

GC content: 57.0

Gene sequence:

>900_bases
ATGACGAAAGTCGGTTTACGCATTGACGTTGATACCTTGCGAGGAACGCGTGAAGGTGTTCCCCGGCTGCTGGCGACATT
GCATCGCCACGGCGTTCAGGCCAGCTTTTTCTTCAGCGTCGGGCCGGACAATATGGGACGCCATCTTTGGCGTCTGATAA
AACCGCGATTTTTATGGAAAATGCTACGTTCAAACGCCGCTTCGCTCTACGGCTGGGATATCCTGCTGGCCGGTACCGCC
TGGCCGGGAAAAAATATCGGCAACGCTAATGCCGGGATTATTCGTGAAACGGCAACATACCATGAGACGGGACTACATGC
CTGGGATCACCATGCGTGGCAGACTCACAGCGGCCACTGGAGTATCCGCCAGCTTGAAGAAGATATTGCGCGCGGCATAA
CGGCGCTTGAGGCCATTATCGGAAAACCCGTCACCTGCTCAGCCGCGGCCGGCTGGCGAGCGGATGGGCGCGTTGTTCGT
GCGAAGGAGTCGTTCAACCTGAGGTATAACAGCGATTGCCGTGGAACCACCTTATTCCGTCCGCTACTGATGCCGGGCCA
GACAGGGACGCCGCAAATCCCGGTCACCTTACCCACGTGGGATGAGGTTATCGGCCCCGCCGTTCAGGCGCAGTCGTTCA
ATACCTGGATTATTTCCCGTATGTTGCAGGACAAAGGCACGCCGGTATATACCATCCATGCGGAAGTAGAAGGTATTGTC
CATCAGCCGCTGTTTGAAGATTTGCTCGTTCGTGCACGCGATGCGGGGATCACCTTTTGTCCTCTGGGCGAACTGCTGCC
GGCATCGCCTGAGTCTCTGCCGTTGGGGCAAATTGTACGTGGACACATCCCTGGCCGTGAAGGTTGGCTGGGGTGTCAAC
AGGCAGCGAGCGCCTCATGA

Upstream 100 bases:

>100_bases
GGCGCTGTCTGGGCTGGGAGCCGTCTATTGCGATGCGTGATACGGTTGAAGAAACGCTGGACTTCTTTCTGCGTAGCGTC
GATATCGCGGAACGCGCATC

Downstream 100 bases:

>100_bases
TGAAATCGATACGCTATTATCTGGCTTTCGCCGCGTTTATCGCGCTCTACTATGTTATTCCTGTCAACAGCCGCCTGCTC
TGGCAGCCGGATGAAACGCG

Product: cytoplasmic protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 298

Protein sequence:

>299_residues
MTKVGLRIDVDTLRGTREGVPRLLATLHRHGVQASFFFSVGPDNMGRHLWRLIKPRFLWKMLRSNAASLYGWDILLAGTA
WPGKNIGNANAGIIRETATYHETGLHAWDHHAWQTHSGHWSIRQLEEDIARGITALEAIIGKPVTCSAAAGWRADGRVVR
AKESFNLRYNSDCRGTTLFRPLLMPGQTGTPQIPVTLPTWDEVIGPAVQAQSFNTWIISRMLQDKGTPVYTIHAEVEGIV
HQPLFEDLLVRARDAGITFCPLGELLPASPESLPLGQIVRGHIPGREGWLGCQQAASAS

Sequences:

>Translated_299_residues
MTKVGLRIDVDTLRGTREGVPRLLATLHRHGVQASFFFSVGPDNMGRHLWRLIKPRFLWKMLRSNAASLYGWDILLAGTA
WPGKNIGNANAGIIRETATYHETGLHAWDHHAWQTHSGHWSIRQLEEDIARGITALEAIIGKPVTCSAAAGWRADGRVVR
AKESFNLRYNSDCRGTTLFRPLLMPGQTGTPQIPVTLPTWDEVIGPAVQAQSFNTWIISRMLQDKGTPVYTIHAEVEGIV
HQPLFEDLLVRARDAGITFCPLGELLPASPESLPLGQIVRGHIPGREGWLGCQQAASAS
>Mature_298_residues
TKVGLRIDVDTLRGTREGVPRLLATLHRHGVQASFFFSVGPDNMGRHLWRLIKPRFLWKMLRSNAASLYGWDILLAGTAW
PGKNIGNANAGIIRETATYHETGLHAWDHHAWQTHSGHWSIRQLEEDIARGITALEAIIGKPVTCSAAAGWRADGRVVRA
KESFNLRYNSDCRGTTLFRPLLMPGQTGTPQIPVTLPTWDEVIGPAVQAQSFNTWIISRMLQDKGTPVYTIHAEVEGIVH
QPLFEDLLVRARDAGITFCPLGELLPASPESLPLGQIVRGHIPGREGWLGCQQAASAS

Specific function: Catalyzes the deformylation of 4-deoxy-4-formamido-L- arabinose-phosphoundecaprenol to 4-amino-4-deoxy-L-arabinose- phosphoundecaprenol. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial p

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family. ArnD deformylase subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788590, Length=298, Percent_Identity=73.1543624161074, Blast_Score=454, Evalue=1e-129,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 33010; Mature: 32879

Theoretical pI: Translated: 8.96; Mature: 8.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKVGLRIDVDTLRGTREGVPRLLATLHRHGVQASFFFSVGPDNMGRHLWRLIKPRFLWK
CCCCEEEEEHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHH
MLRSNAASLYGWDILLAGTAWPGKNIGNANAGIIRETATYHETGLHAWDHHAWQTHSGHW
HHHHCCCCEECEEEEEEECCCCCCCCCCCCCCEEECCHHHHHCCCCHHHCCCCCCCCCCC
SIRQLEEDIARGITALEAIIGKPVTCSAAAGWRADGRVVRAKESFNLRYNSDCRGTTLFR
HHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCEEEEEECCCCCEECCCCCCCHHHH
PLLMPGQTGTPQIPVTLPTWDEVIGPAVQAQSFNTWIISRMLQDKGTPVYTIHAEVEGIV
HHCCCCCCCCCEEEEECCCHHHHHCCHHHHCCCHHHHHHHHHHHCCCEEEEEEECHHHHH
HQPLFEDLLVRARDAGITFCPLGELLPASPESLPLGQIVRGHIPGREGWLGCQQAASAS
HHHHHHHHHHHHHCCCEEEECCHHHCCCCCCCCCHHHHHHCCCCCCCCCCCHHHHCCCC
>Mature Secondary Structure 
TKVGLRIDVDTLRGTREGVPRLLATLHRHGVQASFFFSVGPDNMGRHLWRLIKPRFLWK
CCCEEEEEHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHH
MLRSNAASLYGWDILLAGTAWPGKNIGNANAGIIRETATYHETGLHAWDHHAWQTHSGHW
HHHHCCCCEECEEEEEEECCCCCCCCCCCCCCEEECCHHHHHCCCCHHHCCCCCCCCCCC
SIRQLEEDIARGITALEAIIGKPVTCSAAAGWRADGRVVRAKESFNLRYNSDCRGTTLFR
HHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCEEEEEECCCCCEECCCCCCCHHHH
PLLMPGQTGTPQIPVTLPTWDEVIGPAVQAQSFNTWIISRMLQDKGTPVYTIHAEVEGIV
HHCCCCCCCCCEEEEECCCHHHHHCCHHHHCCCHHHHHHHHHHHCCCEEEEEEECHHHHH
HQPLFEDLLVRARDAGITFCPLGELLPASPESLPLGQIVRGHIPGREGWLGCQQAASAS
HHHHHHHHHHHHHCCCEEEECCHHHCCCCCCCCCHHHHHHCCCCCCCCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA