| Definition | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 chromosome, complete genome. |
|---|---|
| Accession | NC_003197 |
| Length | 4,857,432 |
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The map label for this gene is yohF [H]
Identifier: 16765501
GI number: 16765501
Start: 2268002
End: 2268763
Strand: Reverse
Name: yohF [H]
Synonym: STM2171
Alternate gene names: 16765501
Gene position: 2268763-2268002 (Counterclockwise)
Preceding gene: 16765502
Following gene: 16765499
Centisome position: 46.71
GC content: 54.72
Gene sequence:
>762_bases ATGACCAAAGTCGCAATTGTAACGGCATCAGATTCGGGAATTGGCAAAGCGTGTGCGTTGTTATTAGCACAAAACGGTTT TGATATTGGTATCACCTGGCATTCCGATGAACGCGGCGCGCAGGAGACGGCAAAAAAAGCGGCGCAGTTTGGTGTGCGGG CAGAGACCATTCATCTTGACCTGAGCCAGTTACCCGAGGGCGCGCAGGCCATTGAACATCTTATTCAGCGCCTGGGGCGC GTTGACGTGCTGGTCAATAATGCCGGGGCGATGACCAAATCCGCGTTTATTGATATGCCGTTTACGCAGTGGCGGCAAAT TTTTACCGTGGACGTCGATGGCGCGTTTCTCTGCGCGCAGATCGCCGCCCGGCATATGATTAAACAAGGAGAGGGAGGGC GCATTATCAACATCACCTCCGTCCATGAGCATACGCCGCTTCCGCAAGCCAGCGCCTATACCGCGGCGAAACATGCGTTG GGGGGATTGACTAAATCCATGGCGCTGGAACTGATTGAGCATCATATTTTGGTCAACGCCGTCGCGCCAGGCGCTATCGC CACGCCGATGAATGATATGGATGACAGCGACATTGAGCCGGGATCGGAACCCTCAATCCCTATCGCCCGACCAGGTTCTA CGCATGAAATAGCCAGCCTCGTCGCCTGGCTGTGTTCGGAAGGAGCAAGCTACACCACCGGTCAGTCGCTGATTGTCGAC GGCGGGTTTATGCTGGCGAATCCGCAATTCAACGCAAAATAA
Upstream 100 bases:
>100_bases TTACCAGCGCGCTGGGCGGCGGTTATCATTCCTGATTTTTCCGGATGATTCAGACAGGGTTCCTATACTTAGGCTGTGTA TGATTCATCCGGAGAGGAAT
Downstream 100 bases:
>100_bases ACGCCGGGTGCCGGATGGCGGCGTTATGCCATCCGGATACCATCGGGTTTAACGGGCCTCCGCTTTGCCGCGTCTTTTCA GCCACCAGCGCACGCCCACC
Product: acetoin dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 253; Mature: 252
Protein sequence:
>253_residues MTKVAIVTASDSGIGKACALLLAQNGFDIGITWHSDERGAQETAKKAAQFGVRAETIHLDLSQLPEGAQAIEHLIQRLGR VDVLVNNAGAMTKSAFIDMPFTQWRQIFTVDVDGAFLCAQIAARHMIKQGEGGRIINITSVHEHTPLPQASAYTAAKHAL GGLTKSMALELIEHHILVNAVAPGAIATPMNDMDDSDIEPGSEPSIPIARPGSTHEIASLVAWLCSEGASYTTGQSLIVD GGFMLANPQFNAK
Sequences:
>Translated_253_residues MTKVAIVTASDSGIGKACALLLAQNGFDIGITWHSDERGAQETAKKAAQFGVRAETIHLDLSQLPEGAQAIEHLIQRLGR VDVLVNNAGAMTKSAFIDMPFTQWRQIFTVDVDGAFLCAQIAARHMIKQGEGGRIINITSVHEHTPLPQASAYTAAKHAL GGLTKSMALELIEHHILVNAVAPGAIATPMNDMDDSDIEPGSEPSIPIARPGSTHEIASLVAWLCSEGASYTTGQSLIVD GGFMLANPQFNAK >Mature_252_residues TKVAIVTASDSGIGKACALLLAQNGFDIGITWHSDERGAQETAKKAAQFGVRAETIHLDLSQLPEGAQAIEHLIQRLGRV DVLVNNAGAMTKSAFIDMPFTQWRQIFTVDVDGAFLCAQIAARHMIKQGEGGRIINITSVHEHTPLPQASAYTAAKHALG GLTKSMALELIEHHILVNAVAPGAIATPMNDMDDSDIEPGSEPSIPIARPGSTHEIASLVAWLCSEGASYTTGQSLIVDG GFMLANPQFNAK
Specific function: Unknown
COG id: COG1028
COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=244, Percent_Identity=32.3770491803279, Blast_Score=114, Evalue=1e-25, Organism=Homo sapiens, GI15277342, Length=252, Percent_Identity=30.1587301587302, Blast_Score=103, Evalue=2e-22, Organism=Homo sapiens, GI40254992, Length=245, Percent_Identity=31.8367346938775, Blast_Score=102, Evalue=3e-22, Organism=Homo sapiens, GI126723750, Length=248, Percent_Identity=30.6451612903226, Blast_Score=95, Evalue=7e-20, Organism=Homo sapiens, GI7705925, Length=177, Percent_Identity=33.3333333333333, Blast_Score=92, Evalue=3e-19, Organism=Homo sapiens, GI10190704, Length=254, Percent_Identity=27.9527559055118, Blast_Score=91, Evalue=8e-19, Organism=Homo sapiens, GI19923817, Length=252, Percent_Identity=30.952380952381, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI5031737, Length=244, Percent_Identity=29.0983606557377, Blast_Score=88, Evalue=7e-18, Organism=Homo sapiens, GI4504505, Length=237, Percent_Identity=27.8481012658228, Blast_Score=87, Evalue=1e-17, Organism=Homo sapiens, GI31542939, Length=193, Percent_Identity=30.0518134715026, Blast_Score=82, Evalue=6e-16, Organism=Homo sapiens, GI59889578, Length=194, Percent_Identity=29.3814432989691, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI66933014, Length=250, Percent_Identity=29.6, Blast_Score=76, Evalue=4e-14, Organism=Homo sapiens, GI7706318, Length=189, Percent_Identity=26.4550264550265, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI4503301, Length=210, Percent_Identity=26.6666666666667, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI224922801, Length=169, Percent_Identity=30.1775147928994, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI33667109, Length=193, Percent_Identity=29.5336787564767, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI109715829, Length=193, Percent_Identity=27.979274611399, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI20149619, Length=193, Percent_Identity=25.9067357512953, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI210032110, Length=169, Percent_Identity=24.8520710059172, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI40254986, Length=197, Percent_Identity=30.4568527918782, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI40807363, Length=219, Percent_Identity=26.9406392694064, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI209862901, Length=197, Percent_Identity=29.4416243654822, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI19923983, Length=197, Percent_Identity=29.4416243654822, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI142976729, Length=211, Percent_Identity=24.6445497630332, Blast_Score=65, Evalue=8e-11, Organism=Escherichia coli, GI1788459, Length=251, Percent_Identity=80.0796812749004, Blast_Score=427, Evalue=1e-121, Organism=Escherichia coli, GI1789208, Length=245, Percent_Identity=33.0612244897959, Blast_Score=133, Evalue=1e-32, Organism=Escherichia coli, GI87082160, Length=245, Percent_Identity=33.8775510204082, Blast_Score=127, Evalue=6e-31, Organism=Escherichia coli, GI1790717, Length=246, Percent_Identity=32.1138211382114, Blast_Score=124, Evalue=6e-30, Organism=Escherichia coli, GI1787335, Length=243, Percent_Identity=34.156378600823, Blast_Score=123, Evalue=1e-29, Organism=Escherichia coli, GI2367175, Length=247, Percent_Identity=33.1983805668016, Blast_Score=122, Evalue=3e-29, Organism=Escherichia coli, GI1787905, Length=244, Percent_Identity=34.8360655737705, Blast_Score=112, Evalue=3e-26, Organism=Escherichia coli, GI87082100, Length=252, Percent_Identity=30.5555555555556, Blast_Score=105, Evalue=4e-24, Organism=Escherichia coli, GI1786812, Length=254, Percent_Identity=32.2834645669291, Blast_Score=99, Evalue=3e-22, Organism=Escherichia coli, GI1789057, Length=259, Percent_Identity=28.957528957529, Blast_Score=91, Evalue=5e-20, Organism=Escherichia coli, GI2367365, Length=249, Percent_Identity=26.9076305220884, Blast_Score=91, Evalue=1e-19, Organism=Escherichia coli, GI1789378, Length=244, Percent_Identity=29.9180327868852, Blast_Score=90, Evalue=1e-19, Organism=Caenorhabditis elegans, GI71994604, Length=256, Percent_Identity=29.6875, Blast_Score=125, Evalue=2e-29, Organism=Caenorhabditis elegans, GI71994600, Length=255, Percent_Identity=30.1960784313725, Blast_Score=121, Evalue=4e-28, Organism=Caenorhabditis elegans, GI17560150, Length=262, Percent_Identity=31.6793893129771, Blast_Score=119, Evalue=1e-27, Organism=Caenorhabditis elegans, GI17562910, Length=265, Percent_Identity=33.2075471698113, Blast_Score=117, Evalue=7e-27, Organism=Caenorhabditis elegans, GI17562906, Length=268, Percent_Identity=32.089552238806, Blast_Score=115, Evalue=3e-26, Organism=Caenorhabditis elegans, GI193204405, Length=263, Percent_Identity=33.8403041825095, Blast_Score=114, Evalue=4e-26, Organism=Caenorhabditis elegans, GI17562990, Length=259, Percent_Identity=31.6602316602317, Blast_Score=112, Evalue=2e-25, Organism=Caenorhabditis elegans, GI17555706, Length=243, Percent_Identity=33.7448559670782, Blast_Score=110, Evalue=5e-25, Organism=Caenorhabditis elegans, GI17562908, Length=269, Percent_Identity=30.1115241635688, Blast_Score=107, Evalue=6e-24, Organism=Caenorhabditis elegans, GI17563726, Length=265, Percent_Identity=30.188679245283, Blast_Score=106, Evalue=1e-23, Organism=Caenorhabditis elegans, GI17561402, Length=249, Percent_Identity=29.718875502008, Blast_Score=104, Evalue=4e-23, Organism=Caenorhabditis elegans, GI17560220, Length=261, Percent_Identity=33.7164750957854, Blast_Score=104, Evalue=5e-23, Organism=Caenorhabditis elegans, GI17551412, Length=267, Percent_Identity=31.4606741573034, Blast_Score=103, Evalue=1e-22, Organism=Caenorhabditis elegans, GI17531453, Length=266, Percent_Identity=30.0751879699248, Blast_Score=102, Evalue=2e-22, Organism=Caenorhabditis elegans, GI115534694, Length=243, Percent_Identity=32.5102880658436, Blast_Score=101, Evalue=4e-22, Organism=Caenorhabditis elegans, GI17560332, Length=264, Percent_Identity=31.4393939393939, Blast_Score=100, Evalue=1e-21, Organism=Caenorhabditis elegans, GI17562904, Length=264, Percent_Identity=29.9242424242424, Blast_Score=100, Evalue=1e-21, Organism=Caenorhabditis elegans, GI25147288, Length=244, Percent_Identity=30.7377049180328, Blast_Score=99, Evalue=2e-21, Organism=Caenorhabditis elegans, GI72000259, Length=262, Percent_Identity=31.2977099236641, Blast_Score=99, Evalue=2e-21, Organism=Caenorhabditis elegans, GI17560676, Length=245, Percent_Identity=29.3877551020408, Blast_Score=99, Evalue=2e-21, Organism=Caenorhabditis elegans, GI17538480, Length=266, Percent_Identity=30.0751879699248, Blast_Score=97, Evalue=8e-21, Organism=Caenorhabditis elegans, GI17559104, Length=261, Percent_Identity=29.1187739463602, Blast_Score=91, Evalue=6e-19, Organism=Caenorhabditis elegans, GI17538486, Length=270, Percent_Identity=29.6296296296296, Blast_Score=89, Evalue=3e-18, Organism=Caenorhabditis elegans, GI17565030, Length=271, Percent_Identity=29.520295202952, Blast_Score=87, Evalue=8e-18, Organism=Caenorhabditis elegans, GI17568967, Length=188, Percent_Identity=31.3829787234043, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17564282, Length=191, Percent_Identity=28.2722513089005, Blast_Score=81, Evalue=6e-16, Organism=Caenorhabditis elegans, GI193203115, Length=192, Percent_Identity=27.6041666666667, Blast_Score=77, Evalue=7e-15, Organism=Caenorhabditis elegans, GI193203117, Length=192, Percent_Identity=27.6041666666667, Blast_Score=77, Evalue=8e-15, Organism=Caenorhabditis elegans, GI17536651, Length=247, Percent_Identity=26.7206477732794, Blast_Score=75, Evalue=5e-14, Organism=Caenorhabditis elegans, GI17561272, Length=248, Percent_Identity=26.6129032258064, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17536025, Length=246, Percent_Identity=25.2032520325203, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17544670, Length=264, Percent_Identity=24.6212121212121, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI71997099, Length=207, Percent_Identity=27.536231884058, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17538182, Length=256, Percent_Identity=28.125, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI17555612, Length=224, Percent_Identity=27.6785714285714, Blast_Score=67, Evalue=7e-12, Organism=Saccharomyces cerevisiae, GI6324126, Length=246, Percent_Identity=25.2032520325203, Blast_Score=84, Evalue=2e-17, Organism=Saccharomyces cerevisiae, GI6323882, Length=242, Percent_Identity=27.6859504132231, Blast_Score=75, Evalue=1e-14, Organism=Saccharomyces cerevisiae, GI6322861, Length=187, Percent_Identity=31.0160427807487, Blast_Score=69, Evalue=6e-13, Organism=Drosophila melanogaster, GI23397609, Length=246, Percent_Identity=31.3008130081301, Blast_Score=115, Evalue=2e-26, Organism=Drosophila melanogaster, GI28571526, Length=246, Percent_Identity=31.7073170731707, Blast_Score=112, Evalue=2e-25, Organism=Drosophila melanogaster, GI21355319, Length=244, Percent_Identity=29.5081967213115, Blast_Score=110, Evalue=9e-25, Organism=Drosophila melanogaster, GI21357041, Length=246, Percent_Identity=30.0813008130081, Blast_Score=108, Evalue=4e-24, Organism=Drosophila melanogaster, GI24639444, Length=244, Percent_Identity=29.9180327868852, Blast_Score=104, Evalue=5e-23, Organism=Drosophila melanogaster, GI24644339, Length=246, Percent_Identity=27.6422764227642, Blast_Score=101, Evalue=4e-22, Organism=Drosophila melanogaster, GI18859837, Length=233, Percent_Identity=31.3304721030043, Blast_Score=93, Evalue=2e-19, Organism=Drosophila melanogaster, GI24643142, Length=244, Percent_Identity=29.9180327868852, Blast_Score=88, Evalue=5e-18, Organism=Drosophila melanogaster, GI24580925, Length=193, Percent_Identity=31.0880829015544, Blast_Score=84, Evalue=1e-16, Organism=Drosophila melanogaster, GI28571387, Length=197, Percent_Identity=31.4720812182741, Blast_Score=82, Evalue=3e-16, Organism=Drosophila melanogaster, GI24644337, Length=221, Percent_Identity=28.5067873303167, Blast_Score=81, Evalue=6e-16, Organism=Drosophila melanogaster, GI24641232, Length=210, Percent_Identity=28.0952380952381, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI161076933, Length=196, Percent_Identity=29.5918367346939, Blast_Score=79, Evalue=4e-15, Organism=Drosophila melanogaster, GI24584748, Length=196, Percent_Identity=29.5918367346939, Blast_Score=79, Evalue=4e-15, Organism=Drosophila melanogaster, GI28574402, Length=202, Percent_Identity=28.7128712871287, Blast_Score=78, Evalue=5e-15, Organism=Drosophila melanogaster, GI24584744, Length=202, Percent_Identity=28.7128712871287, Blast_Score=78, Evalue=6e-15, Organism=Drosophila melanogaster, GI116007236, Length=200, Percent_Identity=26.5, Blast_Score=70, Evalue=9e-13, Organism=Drosophila melanogaster, GI21358495, Length=192, Percent_Identity=24.4791666666667, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI17737361, Length=256, Percent_Identity=25.78125, Blast_Score=65, Evalue=3e-11, Organism=Drosophila melanogaster, GI24584752, Length=199, Percent_Identity=25.6281407035176, Blast_Score=64, Evalue=7e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 26831; Mature: 26700
Theoretical pI: Translated: 5.74; Mature: 5.74
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKVAIVTASDSGIGKACALLLAQNGFDIGITWHSDERGAQETAKKAAQFGVRAETIHLD CCEEEEEEECCCCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCEEEEEEEE LSQLPEGAQAIEHLIQRLGRVDVLVNNAGAMTKSAFIDMPFTQWRQIFTVDVDGAFLCAQ HHHCCCHHHHHHHHHHHCCCEEEEECCCCCCCHHHEECCCHHHCCEEEEEECCCHHHHHH IAARHMIKQGEGGRIINITSVHEHTPLPQASAYTAAKHALGGLTKSMALELIEHHILVNA HHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEE VAPGAIATPMNDMDDSDIEPGSEPSIPIARPGSTHEIASLVAWLCSEGASYTTGQSLIVD CCCCCEECCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEE GGFMLANPQFNAK CCEEEECCCCCCC >Mature Secondary Structure TKVAIVTASDSGIGKACALLLAQNGFDIGITWHSDERGAQETAKKAAQFGVRAETIHLD CEEEEEEECCCCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCEEEEEEEE LSQLPEGAQAIEHLIQRLGRVDVLVNNAGAMTKSAFIDMPFTQWRQIFTVDVDGAFLCAQ HHHCCCHHHHHHHHHHHCCCEEEEECCCCCCCHHHEECCCHHHCCEEEEEECCCHHHHHH IAARHMIKQGEGGRIINITSVHEHTPLPQASAYTAAKHALGGLTKSMALELIEHHILVNA HHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEE VAPGAIATPMNDMDDSDIEPGSEPSIPIARPGSTHEIASLVAWLCSEGASYTTGQSLIVD CCCCCEECCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEE GGFMLANPQFNAK CCEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]