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The map label for this gene is ompS [H]

Identifier: 16765331

GI number: 16765331

Start: 2077569

End: 2078765

Strand: Direct

Name: ompS [H]

Synonym: STM1995

Alternate gene names: 16765331

Gene position: 2077569-2078765 (Clockwise)

Preceding gene: 16765326

Following gene: 16765336

Centisome position: 42.77

GC content: 50.38

Gene sequence:

>1197_bases
ATGAACAGAAAAGTTCTGGCACTGCTTGTCCCGGCGTTATTAGTGGCAGGCGCAGCAAATGCGGCTGAAGTTTATAATAA
AAATGGCAACAAACTCGACCTGTACGGCAAAGTTGATGGTCTGCGTTACTTCTCTGACAATGCAGGCGACGACGGCGACC
AGTCCTACGCCCGTTTTGGCTTTAAAGGCGAAACGCAGATTAACGATATGCTGACCGGCTATGGTCAGTGGGAATACAAC
ATTAAGGTAAACACCACCGAAGGCGAAGGTGCAAACTCCTGGACTCGTCTGGGCTTTGCCGGTCTGAAATTCGGCGAGTA
CGGCTCTTTCGATTATGGCCGTAACTATGGTGTTATCTACGACATTGAAGCCTGGACCGATGCGCTGCCGGAATTCGGCG
GTGACACTTATACCCAGACCGATGTCTATATGCTGGGCAGAACCAACGGCGTTGCTACCTACCGTAATACCGACTTCTTC
GGTCTGGTGGAAGGCCTGAACTTCGCGTTGCAGTACCAGGGTAATAATGAAGATCCTGGCGCAGGCGAAGGAACAGCCAA
CGGCAGCGATGCAGATAGTGGTACTCGCAAACTGGCCCGTGAAAACGGCGACGGTTTCGGTATGTCTACCTCCTACGACT
TTGACTTCGGGTTAAGCCTGGGTGCGGCCTACTCTTCCTCTGACCGTACGGACAATCAGGTTGCTAGTGGGCGTGGTGAT
GGCCATCATTACTATGGCAATAGCTATGCCGGCGGTGAAACTGCCGAAGCCTGGACCGTAGGTGTCAAATATGACGCCTA
TAACGTATACCTGGCGGCCATGTACGCTGAAACCCGCAACATGACCTATTATGGCGGCGGCGATGGCGGTGATGGCGGTA
TCGCTAACAAAACCCAGAACTTTGAAGTGGTTGCACAGTATCAGTTCGATTTCGGTCTGCGTCCGTCCATCGCCTACTTG
CAGTCTAAGGGCAAAGATTTAGGCGGCCAGGATATGGATAGCCGTGGTAACTATCGTTACACCGACAAAGATCTGGTTAA
ATATGTTGACGTTGGTATGACTTACTACTTCAACAAAAATATGTCCACCTACGTTGATTATAAAATCAACCTGCTGGACG
AAGATGATGACTTCTACGCAAACAACGGTATTGCAACCGATGATATCGTAGGTGTTGGTCTGGTCTACCAGTTCTAA

Upstream 100 bases:

>100_bases
TATTTTTTAAATTCCATGAACTTCATAGAATAGTATCAATTTGTAGTTTTGTTGAAGTGGCTACATATTCATATAAATTA
TTATCATAAGGGAATACATA

Downstream 100 bases:

>100_bases
GACGCTTTATGTTATTCAAGCCCGTGCTTAGCGCGGGCTTGTTATTATAGGGTAAGAATTAAATAACGGATAACGGCGCA
AAGACAGGTTGACCTGGTTT

Product: porin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 398; Mature: 398

Protein sequence:

>398_residues
MNRKVLALLVPALLVAGAANAAEVYNKNGNKLDLYGKVDGLRYFSDNAGDDGDQSYARFGFKGETQINDMLTGYGQWEYN
IKVNTTEGEGANSWTRLGFAGLKFGEYGSFDYGRNYGVIYDIEAWTDALPEFGGDTYTQTDVYMLGRTNGVATYRNTDFF
GLVEGLNFALQYQGNNEDPGAGEGTANGSDADSGTRKLARENGDGFGMSTSYDFDFGLSLGAAYSSSDRTDNQVASGRGD
GHHYYGNSYAGGETAEAWTVGVKYDAYNVYLAAMYAETRNMTYYGGGDGGDGGIANKTQNFEVVAQYQFDFGLRPSIAYL
QSKGKDLGGQDMDSRGNYRYTDKDLVKYVDVGMTYYFNKNMSTYVDYKINLLDEDDDFYANNGIATDDIVGVGLVYQF

Sequences:

>Translated_398_residues
MNRKVLALLVPALLVAGAANAAEVYNKNGNKLDLYGKVDGLRYFSDNAGDDGDQSYARFGFKGETQINDMLTGYGQWEYN
IKVNTTEGEGANSWTRLGFAGLKFGEYGSFDYGRNYGVIYDIEAWTDALPEFGGDTYTQTDVYMLGRTNGVATYRNTDFF
GLVEGLNFALQYQGNNEDPGAGEGTANGSDADSGTRKLARENGDGFGMSTSYDFDFGLSLGAAYSSSDRTDNQVASGRGD
GHHYYGNSYAGGETAEAWTVGVKYDAYNVYLAAMYAETRNMTYYGGGDGGDGGIANKTQNFEVVAQYQFDFGLRPSIAYL
QSKGKDLGGQDMDSRGNYRYTDKDLVKYVDVGMTYYFNKNMSTYVDYKINLLDEDDDFYANNGIATDDIVGVGLVYQF
>Mature_398_residues
MNRKVLALLVPALLVAGAANAAEVYNKNGNKLDLYGKVDGLRYFSDNAGDDGDQSYARFGFKGETQINDMLTGYGQWEYN
IKVNTTEGEGANSWTRLGFAGLKFGEYGSFDYGRNYGVIYDIEAWTDALPEFGGDTYTQTDVYMLGRTNGVATYRNTDFF
GLVEGLNFALQYQGNNEDPGAGEGTANGSDADSGTRKLARENGDGFGMSTSYDFDFGLSLGAAYSSSDRTDNQVASGRGD
GHHYYGNSYAGGETAEAWTVGVKYDAYNVYLAAMYAETRNMTYYGGGDGGDGGIANKTQNFEVVAQYQFDFGLRPSIAYL
QSKGKDLGGQDMDSRGNYRYTDKDLVKYVDVGMTYYFNKNMSTYVDYKINLLDEDDDFYANNGIATDDIVGVGLVYQF

Specific function: Unknown

COG id: COG3203

COG function: function code M; Outer membrane protein (porin)

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Gram-negative porin family [H]

Homologues:

Organism=Escherichia coli, GI1787641, Length=379, Percent_Identity=67.5461741424802, Blast_Score=493, Evalue=1e-140,
Organism=Escherichia coli, GI1788544, Length=398, Percent_Identity=64.070351758794, Blast_Score=447, Evalue=1e-127,
Organism=Escherichia coli, GI1786436, Length=401, Percent_Identity=54.6134663341646, Blast_Score=408, Evalue=1e-115,
Organism=Escherichia coli, GI1787160, Length=405, Percent_Identity=54.0740740740741, Blast_Score=377, Evalue=1e-106,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001897
- InterPro:   IPR013793
- InterPro:   IPR001702 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 43618; Mature: 43618

Theoretical pI: Translated: 4.13; Mature: 4.13

Prosite motif: PS00576 GRAM_NEG_PORIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRKVLALLVPALLVAGAANAAEVYNKNGNKLDLYGKVDGLRYFSDNAGDDGDQSYARFG
CCCCHHHHHHHHHHHHCCCCHHHHHCCCCCEEEEEEECCCEEEECCCCCCCCCCHHHHCC
FKGETQINDMLTGYGQWEYNIKVNTTEGEGANSWTRLGFAGLKFGEYGSFDYGRNYGVIY
CCCCCCHHHHHCCCCEEEEEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEE
DIEAWTDALPEFGGDTYTQTDVYMLGRTNGVATYRNTDFFGLVEGLNFALQYQGNNEDPG
ECHHHHHHHHHCCCCCCEECEEEEEECCCCEEEEECCCHHEEECCCCEEEEECCCCCCCC
AGEGTANGSDADSGTRKLARENGDGFGMSTSYDFDFGLSLGAAYSSSDRTDNQVASGRGD
CCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCHHHCCCCC
GHHYYGNSYAGGETAEAWTVGVKYDAYNVYLAAMYAETRNMTYYGGGDGGDGGIANKTQN
CCCCCCCCCCCCCCCCEEEEEEEECCEEEEEEEEEEHHCCEEEECCCCCCCCCCCCCCCC
FEVVAQYQFDFGLRPSIAYLQSKGKDLGGQDMDSRGNYRYTDKDLVKYVDVGMTYYFNKN
EEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCEEECHHHHHHHHHCCEEEEECCC
MSTYVDYKINLLDEDDDFYANNGIATDDIVGVGLVYQF
CCEEEEEEEEEECCCCCEEECCCCCCHHEEEEEEEEEC
>Mature Secondary Structure
MNRKVLALLVPALLVAGAANAAEVYNKNGNKLDLYGKVDGLRYFSDNAGDDGDQSYARFG
CCCCHHHHHHHHHHHHCCCCHHHHHCCCCCEEEEEEECCCEEEECCCCCCCCCCHHHHCC
FKGETQINDMLTGYGQWEYNIKVNTTEGEGANSWTRLGFAGLKFGEYGSFDYGRNYGVIY
CCCCCCHHHHHCCCCEEEEEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEE
DIEAWTDALPEFGGDTYTQTDVYMLGRTNGVATYRNTDFFGLVEGLNFALQYQGNNEDPG
ECHHHHHHHHHCCCCCCEECEEEEEECCCCEEEEECCCHHEEECCCCEEEEECCCCCCCC
AGEGTANGSDADSGTRKLARENGDGFGMSTSYDFDFGLSLGAAYSSSDRTDNQVASGRGD
CCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCHHHCCCCC
GHHYYGNSYAGGETAEAWTVGVKYDAYNVYLAAMYAETRNMTYYGGGDGGDGGIANKTQN
CCCCCCCCCCCCCCCCEEEEEEEECCEEEEEEEEEEHHCCEEEECCCCCCCCCCCCCCCC
FEVVAQYQFDFGLRPSIAYLQSKGKDLGGQDMDSRGNYRYTDKDLVKYVDVGMTYYFNKN
EEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCEEECHHHHHHHHHCCEEEEECCC
MSTYVDYKINLLDEDDDFYANNGIATDDIVGVGLVYQF
CCEEEEEEEEEECCCCCEEECCCCCCHHEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7789812; 11677608; 12644504 [H]