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The map label for this gene is fliN

Identifier: 16765315

GI number: 16765315

Start: 2064536

End: 2064949

Strand: Direct

Name: fliN

Synonym: STM1977

Alternate gene names: 16765315

Gene position: 2064536-2064949 (Clockwise)

Preceding gene: 16765314

Following gene: 308065961

Centisome position: 42.5

GC content: 54.83

Gene sequence:

>414_bases
ATGAGTGACATGAATAATCCGTCCGATGAGAATACTGGCGCATTGGATGATCTGTGGGCTGACGCGTTAAACGAGCAAAA
AGCGACCACCACTAAAAGCGCCGCCGACGCGGTTTTCCAACAGCTTGGCGGCGGCGATGTCAGCGGTGCTATGCAGGATA
TCGATCTGATTATGGATATCCCGGTCAAACTGACCGTAGAGCTGGGCCGCACGCGAATGACCATTAAAGAACTGCTGCGT
CTGACGCAGGGGTCGGTCGTCGCGCTGGACGGGCTGGCGGGCGAGCCGCTGGATATCCTGATTAATGGCTACCTGATTGC
CCAGGGTGAAGTGGTCGTCGTGGCGGATAAATACGGCGTACGTATCACCGATATTATTACGCCATCCGAGCGTATGCGTC
GTTTGAGTCGTTAA

Upstream 100 bases:

>100_bases
TACTCACCAGCCAATATGGCACCGTAAACGGACAGTATGCGCTACGCGTAGAACATTTGATCAACCCAATTTTGAATTCG
CTGAATGAGGAACAGCCCAA

Downstream 100 bases:

>100_bases
TGATGAAGACAGAAGCCACGGTTTCTCAGCCCACCGCGCCAGCCGGATCGCCGCTCATGCAGGTGAGCGGCGCATTAATT
GGCATTATTGCGCTCATTCT

Product: flagellar motor switch protein FliN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 137; Mature: 136

Protein sequence:

>137_residues
MSDMNNPSDENTGALDDLWADALNEQKATTTKSAADAVFQQLGGGDVSGAMQDIDLIMDIPVKLTVELGRTRMTIKELLR
LTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLSR

Sequences:

>Translated_137_residues
MSDMNNPSDENTGALDDLWADALNEQKATTTKSAADAVFQQLGGGDVSGAMQDIDLIMDIPVKLTVELGRTRMTIKELLR
LTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLSR
>Mature_136_residues
SDMNNPSDENTGALDDLWADALNEQKATTTKSAADAVFQQLGGGDVSGAMQDIDLIMDIPVKLTVELGRTRMTIKELLRL
TQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLSR

Specific function: FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the mot

COG id: COG1886

COG function: function code NU; Flagellar motor switch/type III secretory pathway protein

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side. Bacterial flagellum basal body

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliN/MopA/SpaO family

Homologues:

Organism=Escherichia coli, GI1788256, Length=137, Percent_Identity=89.7810218978102, Blast_Score=253, Evalue=2e-69,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): FLIN_SALTY (P26419)

Other databases:

- EMBL:   M24463
- EMBL:   AE006468
- EMBL:   L49021
- PIR:   D44513
- RefSeq:   NP_460930.1
- ProteinModelPortal:   P26419
- SMR:   P26419
- PRIDE:   P26419
- GeneID:   1253498
- GenomeReviews:   AE006468_GR
- KEGG:   stm:STM1977
- HOGENOM:   HBG536886
- OMA:   PLATKET
- ProtClustDB:   PRK07963
- BioCyc:   STYP99287:STM1977-MONOMER
- GO:   GO:0006935
- InterPro:   IPR012826
- InterPro:   IPR001172
- InterPro:   IPR001543
- PRINTS:   PR00956
- TIGRFAMs:   TIGR02480

Pfam domain/function: PF01052 SpoA; SSF101801 SpoA

EC number: NA

Molecular weight: Translated: 14789; Mature: 14658

Theoretical pI: Translated: 4.20; Mature: 4.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDMNNPSDENTGALDDLWADALNEQKATTTKSAADAVFQQLGGGDVSGAMQDIDLIMDI
CCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHEECC
PVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGV
CEEEEEECCCCHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEEEEEECCCEEEEECCCCE
RITDIITPSERMRRLSR
EEEEEECCHHHHHHHCC
>Mature Secondary Structure 
SDMNNPSDENTGALDDLWADALNEQKATTTKSAADAVFQQLGGGDVSGAMQDIDLIMDI
CCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHEECC
PVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGV
CEEEEEECCCCHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEEEEEECCCEEEEECCCCE
RITDIITPSERMRRLSR
EEEEEECCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2656645; 11677609; 9324257