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The map label for this gene is yedD

Identifier: 16765302

GI number: 16765302

Start: 2053191

End: 2053616

Strand: Reverse

Name: yedD

Synonym: STM1964

Alternate gene names: 16765302

Gene position: 2053616-2053191 (Counterclockwise)

Preceding gene: 16765306

Following gene: 16765297

Centisome position: 42.28

GC content: 58.92

Gene sequence:

>426_bases
ATGAAAAAAGTAGCGATCGTTGGCGCATTGCTGGTTCTGGCCGGATGCGCCGAGGTGGAAAACTATAATGATGTGGTGAA
AACGCCCGCGCCGGCCGGTCTGGAAGGGTACTGGCAGTCAAAAGGCCCGCAACGTAAGCTGGTGAGCCCTGAAGCTATCG
CCAGCCTGGTGGTGACTAAAGAAGGCGATACGCTGGACTGCCGCCAGTGGCAGCGCGTTATTGCTCTGCCGGGCAAGCTG
ACCATGCTCTCCGATGACTTAACCAATGTTACGGTTAAGCGTGAGCTCTATGAGATTGAGCGCGACGGGAATACCCTGGA
ATATGATGGCATGACGCTGCAACGGGTCGCTCGTCCGACGCCGGAGTGCGCCGCCGCGTTAGAAAAAACGCCGCTGCCGA
CGCCGCTGCCGACGCCGCTGCCGTAA

Upstream 100 bases:

>100_bases
GTAATACCGACTGGATCAAATTGCGGCCAGCGCCTGGAAAGGCTGGCGGCGTCAGGGCTTTAATGCCACAATTCTTCTTT
CTTCTGATGCAGGATGAATG

Downstream 100 bases:

>100_bases
TTTCGCTTCCCGGCAGCGCTCTGCCGCCGGGAACGCTCATCACACGTCCTCAATGACCCACACGCTGACGCTGCCTGCGT
TGCAGAAGAACGTCGCTTCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 141; Mature: 141

Protein sequence:

>141_residues
MKKVAIVGALLVLAGCAEVENYNDVVKTPAPAGLEGYWQSKGPQRKLVSPEAIASLVVTKEGDTLDCRQWQRVIALPGKL
TMLSDDLTNVTVKRELYEIERDGNTLEYDGMTLQRVARPTPECAAALEKTPLPTPLPTPLP

Sequences:

>Translated_141_residues
MKKVAIVGALLVLAGCAEVENYNDVVKTPAPAGLEGYWQSKGPQRKLVSPEAIASLVVTKEGDTLDCRQWQRVIALPGKL
TMLSDDLTNVTVKRELYEIERDGNTLEYDGMTLQRVARPTPECAAALEKTPLPTPLPTPLP
>Mature_141_residues
MKKVAIVGALLVLAGCAEVENYNDVVKTPAPAGLEGYWQSKGPQRKLVSPEAIASLVVTKEGDTLDCRQWQRVIALPGKL
TMLSDDLTNVTVKRELYEIERDGNTLEYDGMTLQRVARPTPECAAALEKTPLPTPLPTPLP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788237, Length=137, Percent_Identity=83.9416058394161, Blast_Score=216, Evalue=4e-58,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YEDD_SALTY (Q06399)

Other databases:

- EMBL:   L13280
- EMBL:   AE006468
- RefSeq:   NP_460917.1
- PRIDE:   Q06399
- GeneID:   1253485
- GenomeReviews:   AE006468_GR
- KEGG:   stm:STM1964
- NMPDR:   fig|99287.1.peg.1898
- HOGENOM:   HBG417359
- OMA:   QRVDRPT
- ProtClustDB:   PRK10397
- BioCyc:   STYP99287:STM1964-MONOMER

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15356; Mature: 15356

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: PS51257 PROKAR_LIPOPROTEIN; PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKVAIVGALLVLAGCAEVENYNDVVKTPAPAGLEGYWQSKGPQRKLVSPEAIASLVVTK
CCHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHEEEEEC
EGDTLDCRQWQRVIALPGKLTMLSDDLTNVTVKRELYEIERDGNTLEYDGMTLQRVARPT
CCCEECHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHCCC
PECAAALEKTPLPTPLPTPLP
HHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MKKVAIVGALLVLAGCAEVENYNDVVKTPAPAGLEGYWQSKGPQRKLVSPEAIASLVVTK
CCHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHEEEEEC
EGDTLDCRQWQRVIALPGKLTMLSDDLTNVTVKRELYEIERDGNTLEYDGMTLQRVARPT
CCCEECHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHCCC
PECAAALEKTPLPTPLPTPLP
HHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8371104; 11677609