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The map label for this gene is yebA [H]

Identifier: 16765232

GI number: 16765232

Start: 1985080

End: 1986399

Strand: Reverse

Name: yebA [H]

Synonym: STM1890

Alternate gene names: 16765232

Gene position: 1986399-1985080 (Counterclockwise)

Preceding gene: 161353595

Following gene: 16765231

Centisome position: 40.89

GC content: 54.7

Gene sequence:

>1320_bases
GTGCAACAGATAGCCCGCTCTGTCGCCCTGGCATTTAATAATCTGCCCCGACCCCACCGCGTTATGCTGGGGTCACTTAC
CGTTCTGACACTGGCCGTCGCCGTATGGCGGCCCTATGTTTACCACCCAGAATCCGCGCCAATCGTTAAAACTATTGAAC
TGGAGAAAAGCGAGATTCGTTCCCTCTTACCGGAGGCCAGCGAACCCATCGATCAGGCCGCGCAGGAAGATGAAGCTATT
CCTCAGGATGAGCTGGACGATAAAACCGCAGGCGAAGTCGGCGTCCATGAATACGTCGTCTCCACAGGCGATACGTTAAG
CAGCATTCTGAATCAGTACGGCATCGATATGAGCGATATTAGCCGACTTGCCGCTTCTGATAAGGAGCTGCGCAATCTGA
AAATTGGCCAACAGCTTTCCTGGACACTGACCGCTGATGGCGATTTACAGCGTCTGACATGGGAAGTCTCCCGCCGTGAA
ACGCGTACCTACGATCGCACTGCCAACGGTTTTAAAATGAGCAGTGAAATGCAGCAGGGGGACTGGGTCAACAGTCTGCT
GAAAGGTACGGTAGGGGGTAGCTTTGTCGCCAGCGCGAAAGAGGCCGGTTTAACCAGCAGCGAAATCAGCGCAGTGATAA
AAGCCATGCAGTGGCAGATGGATTTTCGCAAGCTGAAAAAGGGCGATGAATTTTCGGTTCTGATGTCGCGCGAGATGCTG
GATGGCAAGCGTGAACAGAGTCAGTTGTTGGGCGTGCGGATGCGTTCCGATGGTAAAGATTACTACGCCATTCGCGCCGC
TGACGGTAAATTCTATGACCGTAATGGGGTTGGTCTGGCGAAAGGCTTTTTACGCTTCCCGACCGCTAAACAGTTCCGCA
TCTCCTCCAACTTCAATCCGCGTCGTCTGAACCCGGTTACCGGACGCGTTGCGCCGCATCGTGGCGTTGACTTTGCGATG
CCGCAGGGTACGCCGGTGCTGTCGGTGGGGGATGGCGAGGTCGTGGTCGCTAAACGTAGCGGCGCTGCCGGTTACTACAT
TGCGATTCGTCATGGACGCACCTACACCACACGTTACATGCACTTGCGTAAGCTGCTGGTGAAACCGGGGCAAAAAGTGA
AACGTGGCGATCGTATTGCGCTTTCTGGTAACACCGGGCGTTCCACAGGGCCGCATCTGCATTATGAGGTATGGATCAAC
CAGCAAGCCGTTAACCCTCTGACAGCAAAATTGCCGCGCACGGAAGGTCTGACGGGGTCAGATCGTCGTGAATACCTGGC
ACAGGTGAAAGAGGTTCTGCCGCAACTGCGCTTCGATTAA

Upstream 100 bases:

>100_bases
GAACATTAAACTGGGTAAAACAAGCTATTCAGCGTTTTTAAGCCAATTAGCCAACCAGTATGCGAGCTGCCTGAAAGGAG
ATTAACGAGGAAGTGAATAC

Downstream 100 bases:

>100_bases
CAAATGCGCTGACAGAGCCGGTACGCGATGTGTGCCGGCTTTTTTGTTTTGTGTGAGACGCAGACGTCGCTACACTATTC
ACAATTCCTTTTCGCGTCAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 439; Mature: 439

Protein sequence:

>439_residues
MQQIARSVALAFNNLPRPHRVMLGSLTVLTLAVAVWRPYVYHPESAPIVKTIELEKSEIRSLLPEASEPIDQAAQEDEAI
PQDELDDKTAGEVGVHEYVVSTGDTLSSILNQYGIDMSDISRLAASDKELRNLKIGQQLSWTLTADGDLQRLTWEVSRRE
TRTYDRTANGFKMSSEMQQGDWVNSLLKGTVGGSFVASAKEAGLTSSEISAVIKAMQWQMDFRKLKKGDEFSVLMSREML
DGKREQSQLLGVRMRSDGKDYYAIRAADGKFYDRNGVGLAKGFLRFPTAKQFRISSNFNPRRLNPVTGRVAPHRGVDFAM
PQGTPVLSVGDGEVVVAKRSGAAGYYIAIRHGRTYTTRYMHLRKLLVKPGQKVKRGDRIALSGNTGRSTGPHLHYEVWIN
QQAVNPLTAKLPRTEGLTGSDRREYLAQVKEVLPQLRFD

Sequences:

>Translated_439_residues
MQQIARSVALAFNNLPRPHRVMLGSLTVLTLAVAVWRPYVYHPESAPIVKTIELEKSEIRSLLPEASEPIDQAAQEDEAI
PQDELDDKTAGEVGVHEYVVSTGDTLSSILNQYGIDMSDISRLAASDKELRNLKIGQQLSWTLTADGDLQRLTWEVSRRE
TRTYDRTANGFKMSSEMQQGDWVNSLLKGTVGGSFVASAKEAGLTSSEISAVIKAMQWQMDFRKLKKGDEFSVLMSREML
DGKREQSQLLGVRMRSDGKDYYAIRAADGKFYDRNGVGLAKGFLRFPTAKQFRISSNFNPRRLNPVTGRVAPHRGVDFAM
PQGTPVLSVGDGEVVVAKRSGAAGYYIAIRHGRTYTTRYMHLRKLLVKPGQKVKRGDRIALSGNTGRSTGPHLHYEVWIN
QQAVNPLTAKLPRTEGLTGSDRREYLAQVKEVLPQLRFD
>Mature_439_residues
MQQIARSVALAFNNLPRPHRVMLGSLTVLTLAVAVWRPYVYHPESAPIVKTIELEKSEIRSLLPEASEPIDQAAQEDEAI
PQDELDDKTAGEVGVHEYVVSTGDTLSSILNQYGIDMSDISRLAASDKELRNLKIGQQLSWTLTADGDLQRLTWEVSRRE
TRTYDRTANGFKMSSEMQQGDWVNSLLKGTVGGSFVASAKEAGLTSSEISAVIKAMQWQMDFRKLKKGDEFSVLMSREML
DGKREQSQLLGVRMRSDGKDYYAIRAADGKFYDRNGVGLAKGFLRFPTAKQFRISSNFNPRRLNPVTGRVAPHRGVDFAM
PQGTPVLSVGDGEVVVAKRSGAAGYYIAIRHGRTYTTRYMHLRKLLVKPGQKVKRGDRIALSGNTGRSTGPHLHYEVWIN
QQAVNPLTAKLPRTEGLTGSDRREYLAQVKEVLPQLRFD

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=440, Percent_Identity=92.2727272727273, Blast_Score=850, Evalue=0.0,
Organism=Escherichia coli, GI87082174, Length=114, Percent_Identity=35.0877192982456, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI1789099, Length=96, Percent_Identity=36.4583333333333, Blast_Score=62, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 48969; Mature: 48969

Theoretical pI: Translated: 10.03; Mature: 10.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQIARSVALAFNNLPRPHRVMLGSLTVLTLAVAVWRPYVYHPESAPIVKTIELEKSEIR
CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCEEECCCCCCEEEEEECCHHHHH
SLLPEASEPIDQAAQEDEAIPQDELDDKTAGEVGVHEYVVSTGDTLSSILNQYGIDMSDI
HHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHCCCHHHH
SRLAASDKELRNLKIGQQLSWTLTADGDLQRLTWEVSRRETRTYDRTANGFKMSSEMQQG
HHHHHCHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEECHHHHCC
DWVNSLLKGTVGGSFVASAKEAGLTSSEISAVIKAMQWQMDFRKLKKGDEFSVLMSREML
HHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
DGKREQSQLLGVRMRSDGKDYYAIRAADGKFYDRNGVGLAKGFLRFPTAKQFRISSNFNP
CCHHHHHHHHEEEECCCCCCEEEEEECCCCEECCCCCCHHHHHHHCCCCCEEEECCCCCC
RRLNPVTGRVAPHRGVDFAMPQGTPVLSVGDGEVVVAKRSGAAGYYIAIRHGRTYTTRYM
CCCCCCCCCCCCCCCCCEECCCCCEEEEECCCEEEEEECCCCCEEEEEEECCCCHHHHHH
HLRKLLVKPGQKVKRGDRIALSGNTGRSTGPHLHYEVWINQQAVNPLTAKLPRTEGLTGS
HHHHHHHCCCHHHCCCCEEEEECCCCCCCCCEEEEEEEECCHHCCCHHHCCCCCCCCCCC
DRREYLAQVKEVLPQLRFD
HHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MQQIARSVALAFNNLPRPHRVMLGSLTVLTLAVAVWRPYVYHPESAPIVKTIELEKSEIR
CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCEEECCCCCCEEEEEECCHHHHH
SLLPEASEPIDQAAQEDEAIPQDELDDKTAGEVGVHEYVVSTGDTLSSILNQYGIDMSDI
HHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHCCCHHHH
SRLAASDKELRNLKIGQQLSWTLTADGDLQRLTWEVSRRETRTYDRTANGFKMSSEMQQG
HHHHHCHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEECHHHHCC
DWVNSLLKGTVGGSFVASAKEAGLTSSEISAVIKAMQWQMDFRKLKKGDEFSVLMSREML
HHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
DGKREQSQLLGVRMRSDGKDYYAIRAADGKFYDRNGVGLAKGFLRFPTAKQFRISSNFNP
CCHHHHHHHHEEEECCCCCCEEEEEECCCCEECCCCCCHHHHHHHCCCCCEEEECCCCCC
RRLNPVTGRVAPHRGVDFAMPQGTPVLSVGDGEVVVAKRSGAAGYYIAIRHGRTYTTRYM
CCCCCCCCCCCCCCCCCEECCCCCEEEEECCCEEEEEECCCCCEEEEEEECCCCHHHHHH
HLRKLLVKPGQKVKRGDRIALSGNTGRSTGPHLHYEVWINQQAVNPLTAKLPRTEGLTGS
HHHHHHHCCCHHHCCCCEEEEECCCCCCCCCEEEEEEEECCHHCCCHHHCCCCCCCCCCC
DRREYLAQVKEVLPQLRFD
HHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]