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The map label for this gene is yobB [H]

Identifier: 16765219

GI number: 16765219

Start: 1970392

End: 1971048

Strand: Direct

Name: yobB [H]

Synonym: STM1877

Alternate gene names: 16765219

Gene position: 1970392-1971048 (Clockwise)

Preceding gene: 16765218

Following gene: 16765220

Centisome position: 40.56

GC content: 52.36

Gene sequence:

>657_bases
ATGTCCTCCTGGAAAATTGCTGCTGCGCAGTATGCGCCCCTGAACGCCTCGCCGGCGGAGCATGTCGCCCATCATCTGGA
ATATATTGAGCTTGCGGCTCGTCAACAGTGCGAACTGCTGGTCTTTCCGTCACTGTCGCTATTAGGCTGCGACGAAAGGA
ATAAATCGTTGCCCGCCCCGCCTGACGAGGCGCTTTTACAGCCGCTCACTCATGCGGCCGATACCCACCATATGACTATC
ATTGTGGGTATGCCTGTTGAGCATAACTGCCGCTTCGTAAAAGGCATCGCTATTTTTGCCCCATGGCTAACGTCGCCGCT
CATGTTTCACAAAAGTCATGGCGCCTGTATTGCCAGGCAGCGAAGCGCTATCAACGTGGTGGATGAGCAGCCAGAAGGTG
GTGATATAGATCCCTCATTTACGTTATTCACAACCAGTCAATGTCTTAACGAACCTGAACTCCATGCTTCTACCTCACGC
TTACAACGTTTTTCGCATAAATATGCGCTGGCCGTACTGATGGCCAATGCCTGTGGAAGTAGCGCTCTGTGGAATGAAAG
CGGGCAACTTATTGTTCGTGCCGATTGCGGTTCGCTATTACTGACGGGCCTGCGCACAACGGAGGGTTGGCAAGGCGATA
TCATTCCATTACGCTAA

Upstream 100 bases:

>100_bases
ATAACGTTACACTTCCTTACATGCAGACGACTACATTATAAGGCGATTCTTAACCTATGCTTTTTAGAATGGCTGTAGAG
ACTATGAAAAGGAAGTCATT

Downstream 100 bases:

>100_bases
GGTCTTTCGGTGAGGAATGAATCATGTTGCGGATTATAGACACGGAAACCTGCGGGCTGCAGGGCGGGATCGTAGAGATA
GCCTCTGTTGATGTCATTGA

Product: amidohydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 218; Mature: 217

Protein sequence:

>218_residues
MSSWKIAAAQYAPLNASPAEHVAHHLEYIELAARQQCELLVFPSLSLLGCDERNKSLPAPPDEALLQPLTHAADTHHMTI
IVGMPVEHNCRFVKGIAIFAPWLTSPLMFHKSHGACIARQRSAINVVDEQPEGGDIDPSFTLFTTSQCLNEPELHASTSR
LQRFSHKYALAVLMANACGSSALWNESGQLIVRADCGSLLLTGLRTTEGWQGDIIPLR

Sequences:

>Translated_218_residues
MSSWKIAAAQYAPLNASPAEHVAHHLEYIELAARQQCELLVFPSLSLLGCDERNKSLPAPPDEALLQPLTHAADTHHMTI
IVGMPVEHNCRFVKGIAIFAPWLTSPLMFHKSHGACIARQRSAINVVDEQPEGGDIDPSFTLFTTSQCLNEPELHASTSR
LQRFSHKYALAVLMANACGSSALWNESGQLIVRADCGSLLLTGLRTTEGWQGDIIPLR
>Mature_217_residues
SSWKIAAAQYAPLNASPAEHVAHHLEYIELAARQQCELLVFPSLSLLGCDERNKSLPAPPDEALLQPLTHAADTHHMTII
VGMPVEHNCRFVKGIAIFAPWLTSPLMFHKSHGACIARQRSAINVVDEQPEGGDIDPSFTLFTTSQCLNEPELHASTSRL
QRFSHKYALAVLMANACGSSALWNESGQLIVRADCGSLLLTGLRTTEGWQGDIIPLR

Specific function: Unknown

COG id: COG0388

COG function: function code R; Predicted amidohydrolase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788148, Length=218, Percent_Identity=65.5963302752293, Blast_Score=307, Evalue=3e-85,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003010 [H]

Pfam domain/function: PF00795 CN_hydrolase [H]

EC number: NA

Molecular weight: Translated: 23858; Mature: 23726

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSWKIAAAQYAPLNASPAEHVAHHLEYIELAARQQCELLVFPSLSLLGCDERNKSLPAP
CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEECCCCCCCCCCC
PDEALLQPLTHAADTHHMTIIVGMPVEHNCRFVKGIAIFAPWLTSPLMFHKSHGACIARQ
CHHHHHHHHHHCCCCCEEEEEEECCCCCCCEEEHHHHHHHHHHCCCEEEECCCCCEEECC
RSAINVVDEQPEGGDIDPSFTLFTTSQCLNEPELHASTSRLQRFSHKYALAVLMANACGS
CCEEEEECCCCCCCCCCCCEEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
SALWNESGQLIVRADCGSLLLTGLRTTEGWQGDIIPLR
CCEECCCCCEEEEECCCHHHHHCCCCCCCCCCCEEECC
>Mature Secondary Structure 
SSWKIAAAQYAPLNASPAEHVAHHLEYIELAARQQCELLVFPSLSLLGCDERNKSLPAP
CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEECCCCCCCCCCC
PDEALLQPLTHAADTHHMTIIVGMPVEHNCRFVKGIAIFAPWLTSPLMFHKSHGACIARQ
CHHHHHHHHHHCCCCCEEEEEEECCCCCCCEEEHHHHHHHHHHCCCEEEECCCCCEEECC
RSAINVVDEQPEGGDIDPSFTLFTTSQCLNEPELHASTSRLQRFSHKYALAVLMANACGS
CCEEEEECCCCCCCCCCCCEEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
SALWNESGQLIVRADCGSLLLTGLRTTEGWQGDIIPLR
CCEECCCCCEEEEECCCHHHHHCCCCCCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]