| Definition | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 chromosome, complete genome. |
|---|---|
| Accession | NC_003197 |
| Length | 4,857,432 |
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The map label for this gene is yoaE [H]
Identifier: 16765169
GI number: 16765169
Start: 1926504
End: 1928060
Strand: Reverse
Name: yoaE [H]
Synonym: STM1828
Alternate gene names: 16765169
Gene position: 1928060-1926504 (Counterclockwise)
Preceding gene: 16765170
Following gene: 16765164
Centisome position: 39.69
GC content: 55.75
Gene sequence:
>1557_bases ATGGAATTATTAATGGATCCCTCAATTTGGGTGGGTTTACTCACGCTCGTCGTCCTGGAAATTGTTCTGGGTATCGATAA CCTGGTCTTTATCGCGATCCTCGCCGATAAATTGCCGCCAAAGCAGCGTGACAAAGCGCGTCTTATCGGGCTCTCGCTGG CGCTGATTATGCGTCTGGCGCTGCTGTCCATTATTTCGTGGCTGGTGACCTTAACAAAGCCGCTCTTTACCGTCTGGGAT TTTACCTTCTCCGGCCGCGATTTAATTATGCTGCTGGGCGGTATATTCCTGCTGTTTAAAGCGACCACCGAGCTGCATGA ACGTCTGGAAAACCGCGAGCATGACACCGGACACGGTAAAGGCTATGCGAGCTTCTGGGTGGTAGTCACGCAGATTGTCA TCCTGGATGCGGTCTTCTCGCTGGACGCCGTGATTACGGCGGTAGGTATGGTAAACCATCTGCCGGTTATGATGGCGGCG GTGGTGATTGCGATGGCGGTGATGCTACTGGCGTCAAAACCGCTGACCCGTTTTGTCAACCAGCATCCGACGGTGGTGGT GCTCTGTCTGAGTTTCCTGCTGATGATCGGCTTGAGCCTGGTGGCGGAAGGGTTTGGTTTCCATATTCCGAAAGGCTACC TGTACGCGGCAATTGGTTTCTCGATCGTTATCGAGGTGTTTAACCAGATTGCGCGCCGCAACTTTATTCGTCATCAGTCC ACGTTGCCGCTGCGCGCGCGTACTGCGGACGCTATCCTGCGTCTGATGGGCGGTAAACGCCAGGCGAGTACGCAACATGA AACGGATAGCCCGGCCGCGATATCGGTGTCGGAAGGCGCCTTCGCCGAAGAAGAACGCTACATGATTAACGGCGTACTGA CTCTGGCGTCGCGCTCCCTGCGCGGCATTATGACGCCGCGAGGCGAAATTAGTTGGGTGGATGCGAATCTCAGCGTAGCT GAAATCCGTCAGCAGTTACTCTCTTCTCCGCATAGCCTGTTCCCGGTATGTCGGGGCGAGCTGGATGAAATTATCGGTAT CGTTCGCGCGAAAGAGTTGCTGGTGGCGCTGGAAGAGGGCGCGGATGTTGCGGCTATCGCCGCGTCTTCCCCGGCGATAG TGGTGCCGGAAACGCTTGATCCTATCAATCTGTTAGGCGTTTTGCGCGCGCGCGGCAGTTTCGTTATCGTCACTAACGAG TTCGGCGTGGTGCAGGGGCTGGTTACGCCGCTGGATGTGCTGGAAGCGATTGCCGGTGAGTTCCCGGATGCCGATGAAAC GCCGGAAATCGTTGCCGATGCCGAGGGCTGGATAGTGAAGGGTGGCACCGATCTCCATGCGCTACAGCAGGCGCTGGAAG TTGACCATCTGGTGAACGAAGAGGGCGATATTGCGACGGTCGCGGGGTTAGTGATCGCCGCTAATGGCCATATTCCTCGT GTAGGCGATGTCATTGATGTTCCGCCCCTGCGGATCACCATTGTCGAGGCCAACGACTATCGTGTCGATCTGGTTCGAAT TGTTAAAGAACAGCCTGCCCACGACGAAGAGGAATAA
Upstream 100 bases:
>100_bases GCATATCTTGCCATAGCCTTACTTTGTTTATTGCGTTACCGCCTGCATCCTTTGAGATGTTGTGGGCGCCGTTTAGTCAT TCCTTAAGCAGGAGCTTGTC
Downstream 100 bases:
>100_bases CGTCACACGCAGGAATCAAGTCTATAGATGCGGCATCGCGGACATAATCTGTCCGTTATGCCGGGCGGGCGGCGGCGCGC TGCCCGCCAGCCACTGTGGA
Product: inner membrane protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 518; Mature: 518
Protein sequence:
>518_residues MELLMDPSIWVGLLTLVVLEIVLGIDNLVFIAILADKLPPKQRDKARLIGLSLALIMRLALLSIISWLVTLTKPLFTVWD FTFSGRDLIMLLGGIFLLFKATTELHERLENREHDTGHGKGYASFWVVVTQIVILDAVFSLDAVITAVGMVNHLPVMMAA VVIAMAVMLLASKPLTRFVNQHPTVVVLCLSFLLMIGLSLVAEGFGFHIPKGYLYAAIGFSIVIEVFNQIARRNFIRHQS TLPLRARTADAILRLMGGKRQASTQHETDSPAAISVSEGAFAEEERYMINGVLTLASRSLRGIMTPRGEISWVDANLSVA EIRQQLLSSPHSLFPVCRGELDEIIGIVRAKELLVALEEGADVAAIAASSPAIVVPETLDPINLLGVLRARGSFVIVTNE FGVVQGLVTPLDVLEAIAGEFPDADETPEIVADAEGWIVKGGTDLHALQQALEVDHLVNEEGDIATVAGLVIAANGHIPR VGDVIDVPPLRITIVEANDYRVDLVRIVKEQPAHDEEE
Sequences:
>Translated_518_residues MELLMDPSIWVGLLTLVVLEIVLGIDNLVFIAILADKLPPKQRDKARLIGLSLALIMRLALLSIISWLVTLTKPLFTVWD FTFSGRDLIMLLGGIFLLFKATTELHERLENREHDTGHGKGYASFWVVVTQIVILDAVFSLDAVITAVGMVNHLPVMMAA VVIAMAVMLLASKPLTRFVNQHPTVVVLCLSFLLMIGLSLVAEGFGFHIPKGYLYAAIGFSIVIEVFNQIARRNFIRHQS TLPLRARTADAILRLMGGKRQASTQHETDSPAAISVSEGAFAEEERYMINGVLTLASRSLRGIMTPRGEISWVDANLSVA EIRQQLLSSPHSLFPVCRGELDEIIGIVRAKELLVALEEGADVAAIAASSPAIVVPETLDPINLLGVLRARGSFVIVTNE FGVVQGLVTPLDVLEAIAGEFPDADETPEIVADAEGWIVKGGTDLHALQQALEVDHLVNEEGDIATVAGLVIAANGHIPR VGDVIDVPPLRITIVEANDYRVDLVRIVKEQPAHDEEE >Mature_518_residues MELLMDPSIWVGLLTLVVLEIVLGIDNLVFIAILADKLPPKQRDKARLIGLSLALIMRLALLSIISWLVTLTKPLFTVWD FTFSGRDLIMLLGGIFLLFKATTELHERLENREHDTGHGKGYASFWVVVTQIVILDAVFSLDAVITAVGMVNHLPVMMAA VVIAMAVMLLASKPLTRFVNQHPTVVVLCLSFLLMIGLSLVAEGFGFHIPKGYLYAAIGFSIVIEVFNQIARRNFIRHQS TLPLRARTADAILRLMGGKRQASTQHETDSPAAISVSEGAFAEEERYMINGVLTLASRSLRGIMTPRGEISWVDANLSVA EIRQQLLSSPHSLFPVCRGELDEIIGIVRAKELLVALEEGADVAAIAASSPAIVVPETLDPINLLGVLRARGSFVIVTNE FGVVQGLVTPLDVLEAIAGEFPDADETPEIVADAEGWIVKGGTDLHALQQALEVDHLVNEEGDIATVAGLVIAANGHIPR VGDVIDVPPLRITIVEANDYRVDLVRIVKEQPAHDEEE
Specific function: Unknown
COG id: COG1253
COG function: function code R; Hemolysins and related proteins containing CBS domains
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 CBS domains [H]
Homologues:
Organism=Escherichia coli, GI1788119, Length=519, Percent_Identity=90.7514450867052, Blast_Score=927, Evalue=0.0, Organism=Escherichia coli, GI87082033, Length=519, Percent_Identity=50.2890173410405, Blast_Score=439, Evalue=1e-124, Organism=Escherichia coli, GI1789197, Length=229, Percent_Identity=50.2183406113537, Blast_Score=210, Evalue=2e-55, Organism=Escherichia coli, GI1790664, Length=241, Percent_Identity=26.9709543568465, Blast_Score=108, Evalue=9e-25, Organism=Escherichia coli, GI1786879, Length=226, Percent_Identity=32.3008849557522, Blast_Score=97, Evalue=2e-21, Organism=Escherichia coli, GI145693175, Length=275, Percent_Identity=26.9090909090909, Blast_Score=84, Evalue=2e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016169 - InterPro: IPR000644 - InterPro: IPR005496 - InterPro: IPR005170 [H]
Pfam domain/function: PF00571 CBS; PF03471 CorC_HlyC; PF03741 TerC [H]
EC number: NA
Molecular weight: Translated: 56348; Mature: 56348
Theoretical pI: Translated: 4.73; Mature: 4.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MELLMDPSIWVGLLTLVVLEIVLGIDNLVFIAILADKLPPKQRDKARLIGLSLALIMRLA CCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH LLSIISWLVTLTKPLFTVWDFTFSGRDLIMLLGGIFLLFKATTELHERLENREHDTGHGK HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC GYASFWVVVTQIVILDAVFSLDAVITAVGMVNHLPVMMAAVVIAMAVMLLASKPLTRFVN CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHC QHPTVVVLCLSFLLMIGLSLVAEGFGFHIPKGYLYAAIGFSIVIEVFNQIARRNFIRHQS CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC TLPLRARTADAILRLMGGKRQASTQHETDSPAAISVSEGAFAEEERYMINGVLTLASRSL CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHH RGIMTPRGEISWVDANLSVAEIRQQLLSSPHSLFPVCRGELDEIIGIVRAKELLVALEEG HHCCCCCCCEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC ADVAAIAASSPAIVVPETLDPINLLGVLRARGSFVIVTNEFGVVQGLVTPLDVLEAIAGE CCEEEEECCCCCEEECCCCCHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHCC FPDADETPEIVADAEGWIVKGGTDLHALQQALEVDHLVNEEGDIATVAGLVIAANGHIPR CCCCCCCCCCEECCCCEEEECCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHEEECCCCCC VGDVIDVPPLRITIVEANDYRVDLVRIVKEQPAHDEEE CCCEECCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCC >Mature Secondary Structure MELLMDPSIWVGLLTLVVLEIVLGIDNLVFIAILADKLPPKQRDKARLIGLSLALIMRLA CCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH LLSIISWLVTLTKPLFTVWDFTFSGRDLIMLLGGIFLLFKATTELHERLENREHDTGHGK HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC GYASFWVVVTQIVILDAVFSLDAVITAVGMVNHLPVMMAAVVIAMAVMLLASKPLTRFVN CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHC QHPTVVVLCLSFLLMIGLSLVAEGFGFHIPKGYLYAAIGFSIVIEVFNQIARRNFIRHQS CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC TLPLRARTADAILRLMGGKRQASTQHETDSPAAISVSEGAFAEEERYMINGVLTLASRSL CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHH RGIMTPRGEISWVDANLSVAEIRQQLLSSPHSLFPVCRGELDEIIGIVRAKELLVALEEG HHCCCCCCCEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC ADVAAIAASSPAIVVPETLDPINLLGVLRARGSFVIVTNEFGVVQGLVTPLDVLEAIAGE CCEEEEECCCCCEEECCCCCHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHCC FPDADETPEIVADAEGWIVKGGTDLHALQQALEVDHLVNEEGDIATVAGLVIAANGHIPR CCCCCCCCCCEECCCCEEEECCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHEEECCCCCC VGDVIDVPPLRITIVEANDYRVDLVRIVKEQPAHDEEE CCCEECCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]