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The map label for this gene is yoaA [H]

Identifier: 16765162

GI number: 16765162

Start: 1918518

End: 1920428

Strand: Reverse

Name: yoaA [H]

Synonym: STM1821

Alternate gene names: 16765162

Gene position: 1920428-1918518 (Counterclockwise)

Preceding gene: 16765164

Following gene: 16765161

Centisome position: 39.54

GC content: 56.41

Gene sequence:

>1911_bases
GTGACGGACGATTTTGCAGCAGATGGCCAACTGGCCAAAGCGATAACCGGCTTTAAACCGCGCGAACCACAGCGACAAAT
GGCGGTTGCCGTAACACAAGCGATTGAAAATGCGCAGCCTCTGGTTGTTGAAGCCGGCACCGGAACCGGGAAGACCTATG
CTTACCTCGCTCCGGCGTTGCGCGCCGGGAAAAAAGTCATTATTTCGACCGGGTCGAAAGCGTTGCAGGATCAACTCTAC
AGCCGCGATCTGCCGACGGTAGCAAAAGCGTTGGCGTTTACCGGTAAGACGGCCCTGTTGAAAGGACGTTCAAACTACCT
CTGCCTGGAGCGGCTGGAACAACAAGCGCTGGCGGGCGGCGATTTACCGGTACAAACGTTAAGCGACGTGATATTGCTGC
GCTCCTGGTCAAATCAGACGCGGGATGGCGATATCAGCACCTGCGTCAGCGTGGCGGAGGATTCCCAGGCCTGGCCGTTG
GTCACCAGTACCAACGACAACTGCCTTGGCAGCGATTGCCCGCTCTACAAAGAGTGCTTTGTGGTGAAAGCGCGTAAAAA
GGCGATGGACGCGGATGTGGTGATTGTAAACCACCACCTATTTCTTGCGGATATGGTGGTTAAAGAGAGCGGGTTTGGCG
AACTTATCCCTCAGGCTGAAGTAATGATCTTCGATGAAGCCCACCAACTGCCTGACATCGCCAGCCAGTATTTCGGACAA
TCGCTCTCCAGCCGTCAGTTGCTGGATTTAGCAAAAGACATCACCATCGCCTACCGGACGGAACTGAAAGACACTCAACA
GTTGCAAAAATGCGCCGATCGCCTTGCCCAGAGCGCCCAGGATTTTCGTCTGCAACTGGGGGAGCCCGGCTACCGGGGAA
ATTTGCGTGAACTGTTAGCCGACTCACGTATCCAACGGGCATTTTTACTGCTGGATGATACGCTGGAGCTTTGTTACGAC
GTGGCGAAGCTGTCGCTGGGCCGTTCGGCGCTGCTGGATGCGGCTTTTGAACGCGCCACGCTATACCGTTCACGGCTGAA
ACGCTTAAAAGAGATCAATCAGCCGGGATACAGCTACTGGTATGAGTGCACCTCGCGCCATTTCACCCTGGCGCTGACGC
CGCTCACCGTGGCGGACAAATTCAAAGAGGTGATGGAACAGAAGCCCGGTAGCTGGATTTTTACCTCAGCCACGTTGTCG
GTAAATGATGATCTTCACCACTTTACCGCCCGTCTTGGAATTGAACAGGCAGAATCCATGCTACTGCCCAGCCCATTCGA
CTATACGCGCCAGGCGTTACTCTGCGTACCGCGTAACCTACCGCAAACCAACCAGCCCGGCGCGGCGCGACAGTTGGCGG
CTATGCTCAGGCCGATTATCGAAGCCAATAACGGGCGATGTTTTATGCTGTGCACCTCACACGCCATGATGCGCGATTTG
GCGGAGCAGTTTCGCGCCACCATGACGCTGCCGGTATTGTTGCAAGGGGAAACCAGTAAAGGCCAACTGTTACAGCAATT
TGTTAGCGCCGGCAACGCGCTGCTCGTCGCCACCAGCAGCTTCTGGGAAGGGGTGGACGTGCGCGGCGATACGTTATCGT
TGGTGATTATCGACAAATTGCCGTTTACCTCCCCGGACGACCCGCTGTTAAAAGCGCGAATGGAAGACTGTCGTTTGCGC
GGTGGCGATCCGTTTGATGAGGTTCAACTGCCCGACGCGGTGATTACGCTGAAGCAGGGGGTGGGGCGGCTGATTCGCGA
TGCGGACGATCGCGGGGTGTTAGTGATTTGTGATAACCGGCTGGTGATGCGGCCCTATGGCGCCACGTTTCTCGCCAGCC
TGCCTCCTGCGCCGCGCACGCGTGATATCGCCCGTGCCGTTCGCTTTCTTGCGATTCCATCCGCCGAGTAA

Upstream 100 bases:

>100_bases
TGGTTCAAGACTGCCACAATGTGGCGCCGCCGTCACCTCTGTAACTGGCGTAAGCCTTTCTACCCTGACATAATCCCTGT
GCAAATTAACAGGGGGCAGT

Downstream 100 bases:

>100_bases
TTTGTTACGGAGTATGGTAAGATGCGCGCTATTTTATTGATCTAAGCACGAAACCTCATGCGAATTCTGGCTATCGATAC
CGCCACAGAGGCCTGTTCTG

Product: DNA helicase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 636; Mature: 635

Protein sequence:

>636_residues
MTDDFAADGQLAKAITGFKPREPQRQMAVAVTQAIENAQPLVVEAGTGTGKTYAYLAPALRAGKKVIISTGSKALQDQLY
SRDLPTVAKALAFTGKTALLKGRSNYLCLERLEQQALAGGDLPVQTLSDVILLRSWSNQTRDGDISTCVSVAEDSQAWPL
VTSTNDNCLGSDCPLYKECFVVKARKKAMDADVVIVNHHLFLADMVVKESGFGELIPQAEVMIFDEAHQLPDIASQYFGQ
SLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLADSRIQRAFLLLDDTLELCYD
VAKLSLGRSALLDAAFERATLYRSRLKRLKEINQPGYSYWYECTSRHFTLALTPLTVADKFKEVMEQKPGSWIFTSATLS
VNDDLHHFTARLGIEQAESMLLPSPFDYTRQALLCVPRNLPQTNQPGAARQLAAMLRPIIEANNGRCFMLCTSHAMMRDL
AEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLR
GGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFLAIPSAE

Sequences:

>Translated_636_residues
MTDDFAADGQLAKAITGFKPREPQRQMAVAVTQAIENAQPLVVEAGTGTGKTYAYLAPALRAGKKVIISTGSKALQDQLY
SRDLPTVAKALAFTGKTALLKGRSNYLCLERLEQQALAGGDLPVQTLSDVILLRSWSNQTRDGDISTCVSVAEDSQAWPL
VTSTNDNCLGSDCPLYKECFVVKARKKAMDADVVIVNHHLFLADMVVKESGFGELIPQAEVMIFDEAHQLPDIASQYFGQ
SLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLADSRIQRAFLLLDDTLELCYD
VAKLSLGRSALLDAAFERATLYRSRLKRLKEINQPGYSYWYECTSRHFTLALTPLTVADKFKEVMEQKPGSWIFTSATLS
VNDDLHHFTARLGIEQAESMLLPSPFDYTRQALLCVPRNLPQTNQPGAARQLAAMLRPIIEANNGRCFMLCTSHAMMRDL
AEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLR
GGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFLAIPSAE
>Mature_635_residues
TDDFAADGQLAKAITGFKPREPQRQMAVAVTQAIENAQPLVVEAGTGTGKTYAYLAPALRAGKKVIISTGSKALQDQLYS
RDLPTVAKALAFTGKTALLKGRSNYLCLERLEQQALAGGDLPVQTLSDVILLRSWSNQTRDGDISTCVSVAEDSQAWPLV
TSTNDNCLGSDCPLYKECFVVKARKKAMDADVVIVNHHLFLADMVVKESGFGELIPQAEVMIFDEAHQLPDIASQYFGQS
LSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLADSRIQRAFLLLDDTLELCYDV
AKLSLGRSALLDAAFERATLYRSRLKRLKEINQPGYSYWYECTSRHFTLALTPLTVADKFKEVMEQKPGSWIFTSATLSV
NDDLHHFTARLGIEQAESMLLPSPFDYTRQALLCVPRNLPQTNQPGAARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLA
EQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRG
GDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFLAIPSAE

Specific function: Unknown

COG id: COG1199

COG function: function code KL; Rad3-related DNA helicases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase ATP-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788110, Length=635, Percent_Identity=95.2755905511811, Blast_Score=1249, Evalue=0.0,
Organism=Escherichia coli, GI1787018, Length=699, Percent_Identity=28.3261802575107, Blast_Score=197, Evalue=1e-51,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR010614
- InterPro:   IPR014013
- InterPro:   IPR006555
- InterPro:   IPR006935 [H]

Pfam domain/function: PF06733 DEAD_2; PF04851 ResIII [H]

EC number: =3.6.4.12 [H]

Molecular weight: Translated: 70284; Mature: 70153

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDDFAADGQLAKAITGFKPREPQRQMAVAVTQAIENAQPLVVEAGTGTGKTYAYLAPAL
CCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHH
RAGKKVIISTGSKALQDQLYSRDLPTVAKALAFTGKTALLKGRSNYLCLERLEQQALAGG
HCCCEEEEECCCHHHHHHHHHCCCHHHHHHHHHCCCHHEECCCCCHHHHHHHHHHHHCCC
DLPVQTLSDVILLRSWSNQTRDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPLYKECF
CCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCEEECCCCCCCCCCCCHHHHHH
VVKARKKAMDADVVIVNHHLFLADMVVKESGFGELIPQAEVMIFDEAHQLPDIASQYFGQ
HHHHHHHCCCCCEEEEECHHHHHHHHHHCCCCCCCCCCCEEEEECCHHCCHHHHHHHHCC
SLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLA
CCCHHHHHHHHHHCEEEEHHCCHHHHHHHHHHHHHHHCHHHHEEECCCCCCCCCHHHHHH
DSRIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRSRLKRLKEINQPGYSYW
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
YECTSRHFTLALTPLTVADKFKEVMEQKPGSWIFTSATLSVNDDLHHFTARLGIEQAESM
HHHCCCEEEEEEECHHHHHHHHHHHHCCCCCEEEEEEEEEECCHHHHHHHHHCHHHHHHH
LLPSPFDYTRQALLCVPRNLPQTNQPGAARQLAAMLRPIIEANNGRCFMLCTSHAMMRDL
CCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHH
AEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKL
HHHHHHHEEEEEEEECCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEEEEEECC
PFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNR
CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCE
LVMRPYGATFLASLPPAPRTRDIARAVRFLAIPSAE
EEECCCCCHHHHCCCCCCCHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
TDDFAADGQLAKAITGFKPREPQRQMAVAVTQAIENAQPLVVEAGTGTGKTYAYLAPAL
CCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHH
RAGKKVIISTGSKALQDQLYSRDLPTVAKALAFTGKTALLKGRSNYLCLERLEQQALAGG
HCCCEEEEECCCHHHHHHHHHCCCHHHHHHHHHCCCHHEECCCCCHHHHHHHHHHHHCCC
DLPVQTLSDVILLRSWSNQTRDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPLYKECF
CCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCEEECCCCCCCCCCCCHHHHHH
VVKARKKAMDADVVIVNHHLFLADMVVKESGFGELIPQAEVMIFDEAHQLPDIASQYFGQ
HHHHHHHCCCCCEEEEECHHHHHHHHHHCCCCCCCCCCCEEEEECCHHCCHHHHHHHHCC
SLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLA
CCCHHHHHHHHHHCEEEEHHCCHHHHHHHHHHHHHHHCHHHHEEECCCCCCCCCHHHHHH
DSRIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRSRLKRLKEINQPGYSYW
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
YECTSRHFTLALTPLTVADKFKEVMEQKPGSWIFTSATLSVNDDLHHFTARLGIEQAESM
HHHCCCEEEEEEECHHHHHHHHHHHHCCCCCEEEEEEEEEECCHHHHHHHHHCHHHHHHH
LLPSPFDYTRQALLCVPRNLPQTNQPGAARQLAAMLRPIIEANNGRCFMLCTSHAMMRDL
CCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHH
AEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKL
HHHHHHHEEEEEEEECCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEEEEEECC
PFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNR
CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCE
LVMRPYGATFLASLPPAPRTRDIARAVRFLAIPSAE
EEECCCCCHHHHCCCCCCCHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503 [H]