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The map label for this gene is oppB [H]

Identifier: 16765089

GI number: 16765089

Start: 1838566

End: 1839486

Strand: Reverse

Name: oppB [H]

Synonym: STM1745

Alternate gene names: 16765089

Gene position: 1839486-1838566 (Counterclockwise)

Preceding gene: 39546324

Following gene: 16765088

Centisome position: 37.87

GC content: 50.81

Gene sequence:

>921_bases
ATGTTGAAATTTATTTTACGCCGCTGTCTGGAAGCGATTCCGACGCTGTTTATTCTTATTACCATCTCTTTCTTTATGAT
GCGCCTCGCGCCGGGGAGTCCTTTTACCGGCGAGCGCGCATTGCCGCCGGAAGTGCTGGCCAATATTGAAGCAAAATATC
ATCTGAACGATCCCATCATGACGCAGTACTTCAGCTACCTGAAGCAGCTGGCGCATGGCGATTTTGGACCATCGTTTAAA
TATAAAGATTACACGGTCAACGATCTGGTTGCCGCCAGCTTCCCCGTTTCGGCGAAACTTGGCGCCGCCGCTTTTTTGCT
GGCGGTCATTATTGGTGTCAGCGCTGGCGTGATTGCCGCGCTAAAGCAAAATACGCGATGGGATTATACGGTGATGGGAT
TTGCCATGACCGGCGTCGTTATCCCCAGTTTTGTGGTGGCGCCGCTACTGGTGATGGTCTTTGCGATAACCTTGCAATGG
CTGCCTGGCGGCGGCTGGAACGGCGGGGCGTTAAAATTTATGATCCTGCCGATGGTTGCGCTTTCACTGGCCTATATTGC
CAGCATCGCTCGTATTACGCGCGGCTCAATGATTGAAGTTCTGCATTCGAACTTTATTCGTACCGCGCGGGCAAAAGGAT
TACCGATGCGCAGAATTATCTTCCGCCATGCGTTAAAACCTGCGCTGCTGCCGGTTTTATCCTATATGGGGCCAGCCTTT
GTCGGCATTATTACCGGCTCAATGGTGATTGAAACTATTTATGGCTTACCGGGCATTGGGCAGCTTTTCGTTAATGGCGC
GCTCAACCGCGATTACTCGCTGGTGTTAAGTTTGACCATTCTAGTCGGGGCGCTGACCATATTATTTAACGCCATTGTCG
ATGTGCTCTATGCCGTTATCGACCCGAAAATTCGCTATTGA

Upstream 100 bases:

>100_bases
CGGTTGTCCCATGGTGTCTTTTTTCATCGCACTATAACTTTCCCTGGCGGATCTTTTGTCACGTCCGGGAAGTAAAGGCA
CAGGCCAGAAGGTACGGGCA

Downstream 100 bases:

>100_bases
TACTGGAGCTCGCGATGATGTTAAGTAAGAAAAACAGCGAGACGCTGGAAAATTTCAGTGAAAAGCTGGAGGTGGAAGGT
CGCAGCCTTTGGCAAGATGC

Product: oligopeptide transporter permease

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MLKFILRRCLEAIPTLFILITISFFMMRLAPGSPFTGERALPPEVLANIEAKYHLNDPIMTQYFSYLKQLAHGDFGPSFK
YKDYTVNDLVAASFPVSAKLGAAAFLLAVIIGVSAGVIAALKQNTRWDYTVMGFAMTGVVIPSFVVAPLLVMVFAITLQW
LPGGGWNGGALKFMILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRRIIFRHALKPALLPVLSYMGPAF
VGIITGSMVIETIYGLPGIGQLFVNGALNRDYSLVLSLTILVGALTILFNAIVDVLYAVIDPKIRY

Sequences:

>Translated_306_residues
MLKFILRRCLEAIPTLFILITISFFMMRLAPGSPFTGERALPPEVLANIEAKYHLNDPIMTQYFSYLKQLAHGDFGPSFK
YKDYTVNDLVAASFPVSAKLGAAAFLLAVIIGVSAGVIAALKQNTRWDYTVMGFAMTGVVIPSFVVAPLLVMVFAITLQW
LPGGGWNGGALKFMILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRRIIFRHALKPALLPVLSYMGPAF
VGIITGSMVIETIYGLPGIGQLFVNGALNRDYSLVLSLTILVGALTILFNAIVDVLYAVIDPKIRY
>Mature_306_residues
MLKFILRRCLEAIPTLFILITISFFMMRLAPGSPFTGERALPPEVLANIEAKYHLNDPIMTQYFSYLKQLAHGDFGPSFK
YKDYTVNDLVAASFPVSAKLGAAAFLLAVIIGVSAGVIAALKQNTRWDYTVMGFAMTGVVIPSFVVAPLLVMVFAITLQW
LPGGGWNGGALKFMILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRRIIFRHALKPALLPVLSYMGPAF
VGIITGSMVIETIYGLPGIGQLFVNGALNRDYSLVLSLTILVGALTILFNAIVDVLYAVIDPKIRY

Specific function: Part of the binding-protein-dependent transport system for oligopeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787497, Length=306, Percent_Identity=96.078431372549, Blast_Score=594, Evalue=1e-171,
Organism=Escherichia coli, GI1787053, Length=310, Percent_Identity=36.4516129032258, Blast_Score=194, Evalue=6e-51,
Organism=Escherichia coli, GI1789965, Length=338, Percent_Identity=34.3195266272189, Blast_Score=194, Evalue=9e-51,
Organism=Escherichia coli, GI1789888, Length=310, Percent_Identity=35.1612903225806, Blast_Score=178, Evalue=4e-46,
Organism=Escherichia coli, GI1788504, Length=362, Percent_Identity=27.0718232044199, Blast_Score=142, Evalue=2e-35,
Organism=Escherichia coli, GI1787761, Length=328, Percent_Identity=31.4024390243902, Blast_Score=132, Evalue=4e-32,
Organism=Escherichia coli, GI1787550, Length=266, Percent_Identity=29.6992481203008, Blast_Score=124, Evalue=1e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33421; Mature: 33421

Theoretical pI: Translated: 10.21; Mature: 10.21

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKFILRRCLEAIPTLFILITISFFMMRLAPGSPFTGERALPPEVLANIEAKYHLNDPIM
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCEEECCCHHH
TQYFSYLKQLAHGDFGPSFKYKDYTVNDLVAASFPVSAKLGAAAFLLAVIIGVSAGVIAA
HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LKQNTRWDYTVMGFAMTGVVIPSFVVAPLLVMVFAITLQWLPGGGWNGGALKFMILPMVA
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
LSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRRIIFRHALKPALLPVLSYMGPAF
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
VGIITGSMVIETIYGLPGIGQLFVNGALNRDYSLVLSLTILVGALTILFNAIVDVLYAVI
HHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DPKIRY
CCCCCC
>Mature Secondary Structure
MLKFILRRCLEAIPTLFILITISFFMMRLAPGSPFTGERALPPEVLANIEAKYHLNDPIM
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCEEECCCHHH
TQYFSYLKQLAHGDFGPSFKYKDYTVNDLVAASFPVSAKLGAAAFLLAVIIGVSAGVIAA
HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LKQNTRWDYTVMGFAMTGVVIPSFVVAPLLVMVFAITLQWLPGGGWNGGALKFMILPMVA
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
LSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRRIIFRHALKPALLPVLSYMGPAF
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
VGIITGSMVIETIYGLPGIGQLFVNGALNRDYSLVLSLTILVGALTILFNAIVDVLYAVI
HHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DPKIRY
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]