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The map label for this gene is oppC [H]

Identifier: 16765088

GI number: 16765088

Start: 1837643

End: 1838551

Strand: Reverse

Name: oppC [H]

Synonym: STM1744

Alternate gene names: 16765088

Gene position: 1838551-1837643 (Counterclockwise)

Preceding gene: 16765089

Following gene: 16765087

Centisome position: 37.85

GC content: 52.7

Gene sequence:

>909_bases
ATGATGTTAAGTAAGAAAAACAGCGAGACGCTGGAAAATTTCAGTGAAAAGCTGGAGGTGGAAGGTCGCAGCCTTTGGCA
AGATGCCCGTCGGCGCTTTATGCATAACCGTGCGGCGGTGGCCAGTCTTATTGTCCTGTTTCTGATAGCCCTGTTCGTGA
CAGTGGCGCCTATGCTGTCGCAATTTACCTATTTCGATACCGACTGGGGCATGATGTCCAGTGCGCCGGATATGGCGTCC
GGTCACTATTTCGGCACTGACTCTTCCGGGCGCGATCTGTTGGTGCGCGTTGCCATCGGCGGGCGTATCTCATTAATGGT
CGGGATTGCCGCCGCGCTGGTGGCGGTCATTGTCGGAACGCTGTATGGCTCGCTGTCCGGCTATCTGGGCGGCAAAATTG
ATTCTGTGATGATGCGTTTGTTGGAGATCCTCAACTCGTTCCCGTTTATGTTCTTTGTGATTTTGCTGGTGACGTTTTTT
GGGCAGAACATTCTGTTGATTTTCGTCGCCATCGGCATGGTCTCCTGGCTTGATATGGCGCGTATCGTGCGTGGCCAAAC
CCTAAGTCTTAAACGTAAAGAATTCATCGAAGCCGCGCAGGTGGGTGGTGTGTCGACTGCCAGCATTGTGATCCGCCATA
TTGTGCCTAACGTCCTGGGCGTAGTGGTAGTGTATGCATCGTTGCTGGTGCCCAGCATGATTCTGTTTGAGTCTTTCCTC
AGTTTCCTGGGGCTTGGGACGCAGGAACCGTTAAGCAGTTGGGGAGCGTTATTGAGCGATGGCGCAAATTCAATGGAAGT
CTCACCGTGGCTGCTGCTGTTTCCGGCTGGCTTTCTCGTGGTGACGTTATTCTGTTTTAACTTTATTGGCGATGGCCTGC
GTGATGCCCTCGACCCGAAAGATCGTTAA

Upstream 100 bases:

>100_bases
CCATTCTAGTCGGGGCGCTGACCATATTATTTAACGCCATTGTCGATGTGCTCTATGCCGTTATCGACCCGAAAATTCGC
TATTGATACTGGAGCTCGCG

Downstream 100 bases:

>100_bases
GGAGTACAGCCATGAGCTTATCAGAAACCGCAACTCAGGCGCCGCAACCGGCGAATGTACTGCTGGAGGTAAACGATCTT
CGTGTTACGTTCGCTACGCC

Product: oligopeptide transport protein

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MMLSKKNSETLENFSEKLEVEGRSLWQDARRRFMHNRAAVASLIVLFLIALFVTVAPMLSQFTYFDTDWGMMSSAPDMAS
GHYFGTDSSGRDLLVRVAIGGRISLMVGIAAALVAVIVGTLYGSLSGYLGGKIDSVMMRLLEILNSFPFMFFVILLVTFF
GQNILLIFVAIGMVSWLDMARIVRGQTLSLKRKEFIEAAQVGGVSTASIVIRHIVPNVLGVVVVYASLLVPSMILFESFL
SFLGLGTQEPLSSWGALLSDGANSMEVSPWLLLFPAGFLVVTLFCFNFIGDGLRDALDPKDR

Sequences:

>Translated_302_residues
MMLSKKNSETLENFSEKLEVEGRSLWQDARRRFMHNRAAVASLIVLFLIALFVTVAPMLSQFTYFDTDWGMMSSAPDMAS
GHYFGTDSSGRDLLVRVAIGGRISLMVGIAAALVAVIVGTLYGSLSGYLGGKIDSVMMRLLEILNSFPFMFFVILLVTFF
GQNILLIFVAIGMVSWLDMARIVRGQTLSLKRKEFIEAAQVGGVSTASIVIRHIVPNVLGVVVVYASLLVPSMILFESFL
SFLGLGTQEPLSSWGALLSDGANSMEVSPWLLLFPAGFLVVTLFCFNFIGDGLRDALDPKDR
>Mature_302_residues
MMLSKKNSETLENFSEKLEVEGRSLWQDARRRFMHNRAAVASLIVLFLIALFVTVAPMLSQFTYFDTDWGMMSSAPDMAS
GHYFGTDSSGRDLLVRVAIGGRISLMVGIAAALVAVIVGTLYGSLSGYLGGKIDSVMMRLLEILNSFPFMFFVILLVTFF
GQNILLIFVAIGMVSWLDMARIVRGQTLSLKRKEFIEAAQVGGVSTASIVIRHIVPNVLGVVVVYASLLVPSMILFESFL
SFLGLGTQEPLSSWGALLSDGANSMEVSPWLLLFPAGFLVVTLFCFNFIGDGLRDALDPKDR

Specific function: Part of the binding-protein-dependent transport system for oligopeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787498, Length=302, Percent_Identity=96.0264900662252, Blast_Score=532, Evalue=1e-152,
Organism=Escherichia coli, GI1787054, Length=282, Percent_Identity=37.9432624113475, Blast_Score=195, Evalue=4e-51,
Organism=Escherichia coli, GI1787760, Length=261, Percent_Identity=34.8659003831418, Blast_Score=163, Evalue=2e-41,
Organism=Escherichia coli, GI1789889, Length=226, Percent_Identity=30.9734513274336, Blast_Score=132, Evalue=4e-32,
Organism=Escherichia coli, GI1788505, Length=220, Percent_Identity=33.1818181818182, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1789964, Length=219, Percent_Identity=36.0730593607306, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1787549, Length=215, Percent_Identity=28.8372093023256, Blast_Score=99, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33091; Mature: 33091

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMLSKKNSETLENFSEKLEVEGRSLWQDARRRFMHNRAAVASLIVLFLIALFVTVAPMLS
CCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QFTYFDTDWGMMSSAPDMASGHYFGTDSSGRDLLVRVAIGGRISLMVGIAAALVAVIVGT
HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHH
LYGSLSGYLGGKIDSVMMRLLEILNSFPFMFFVILLVTFFGQNILLIFVAIGMVSWLDMA
HHHHHHHHCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
RIVRGQTLSLKRKEFIEAAQVGGVSTASIVIRHIVPNVLGVVVVYASLLVPSMILFESFL
HHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SFLGLGTQEPLSSWGALLSDGANSMEVSPWLLLFPAGFLVVTLFCFNFIGDGLRDALDPK
HHHCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
DR
CC
>Mature Secondary Structure
MMLSKKNSETLENFSEKLEVEGRSLWQDARRRFMHNRAAVASLIVLFLIALFVTVAPMLS
CCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QFTYFDTDWGMMSSAPDMASGHYFGTDSSGRDLLVRVAIGGRISLMVGIAAALVAVIVGT
HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHH
LYGSLSGYLGGKIDSVMMRLLEILNSFPFMFFVILLVTFFGQNILLIFVAIGMVSWLDMA
HHHHHHHHCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
RIVRGQTLSLKRKEFIEAAQVGGVSTASIVIRHIVPNVLGVVVVYASLLVPSMILFESFL
HHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SFLGLGTQEPLSSWGALLSDGANSMEVSPWLLLFPAGFLVVTLFCFNFIGDGLRDALDPK
HHHCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
DR
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]