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The map label for this gene is yhjC [H]

Identifier: 16765020

GI number: 16765020

Start: 1769947

End: 1770852

Strand: Reverse

Name: yhjC [H]

Synonym: STM1677

Alternate gene names: 16765020

Gene position: 1770852-1769947 (Counterclockwise)

Preceding gene: 16765022

Following gene: 16765019

Centisome position: 36.46

GC content: 54.75

Gene sequence:

>906_bases
ATGGACAAGCTGGAAGCGATGCAGGTCTATGTTTGCGTAGTGGATACCCATAGTTTTATCAGAGCCGCCGAAGTGCTGGG
CGTGCCGCGCTCAACGGTATCGCGAGTGGTTAAAGAACTGGAATCCTGGCTTAAGATTCAACTTTTGCAACGTACAACTC
GCAAACTTAGTGTGACCGCAGAGGGGCGGCGTTACTACGAAGAGTGCAAAAGAGTGCTGGCAGATATCGCGGCCATGGAG
TCGTCATTTCCCGGCCGGGCGGCACAACCCAAAGGGCGTTTTAAAGTGGGGATGCCGCAATCTCTCGCCCGACATTGCAT
TATTCCCACGCTCCCGGCCTTTTTGCGCCAGTATCCGGAGCTGGAGCTGATACTTTGTTCCAGCGATAGCGTGGAGGATA
TTATCCTTCAAGGGTATGACTGCGTGATTCGGGCCGGCAGGATCGATGATTCCACCACGCTGGTTGCCCGTCCACTTGCC
AGCTTTAACTGGGTGATAGCAGCATCGCCCACTTACATTGAGCGTTACGGTAGCCCTGAAAATTTAGATGATCTGCAAAA
GCACCATGCGGTCGGCTACCTGAACCACCGCACCGGGCGTACCATCGACTGGTTTTTTACGCGTGAAGGGAAGGATTACG
CGATACGGGTGCAGGAGACGCTGGTTGTCGATGATACGGACGCTTATATTCAGGCCGGAATACAGGGACTGGGGTTAATT
CGCGTCGCCAGCTATCTGGTTGCGCCGTATCTGCACAGCGGGGCGCTGGTGACCTGCATGGACAACCATTCTTATGATTT
GCCGCTTGCGCTGGTCTATCCGCAAAACAGGTTTCTGCCGCCTGCGGTACGCGCTTTTTATGACTGGTGCAAAACGGCGC
TGAGCCAGCCGGCGCCTCTTCGCTAA

Upstream 100 bases:

>100_bases
ATTCACCTGTAGATAGAGATTACGTCAGGGATCTGCGTTCGATAAGACGCCGAAGACGGGTTAGACTGTTCTGATAAATG
GGATAATTGGCGGGGGGAAA

Downstream 100 bases:

>100_bases
AAATATTATTCCGGATATCGCATTGCCTGTTCAGAAAACTTTTTCACAGACGGTCAAAATGACGGTACTGGTTTTGACGC
ATAAGAAAAGTCATTATCAA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MDKLEAMQVYVCVVDTHSFIRAAEVLGVPRSTVSRVVKELESWLKIQLLQRTTRKLSVTAEGRRYYEECKRVLADIAAME
SSFPGRAAQPKGRFKVGMPQSLARHCIIPTLPAFLRQYPELELILCSSDSVEDIILQGYDCVIRAGRIDDSTTLVARPLA
SFNWVIAASPTYIERYGSPENLDDLQKHHAVGYLNHRTGRTIDWFFTREGKDYAIRVQETLVVDDTDAYIQAGIQGLGLI
RVASYLVAPYLHSGALVTCMDNHSYDLPLALVYPQNRFLPPAVRAFYDWCKTALSQPAPLR

Sequences:

>Translated_301_residues
MDKLEAMQVYVCVVDTHSFIRAAEVLGVPRSTVSRVVKELESWLKIQLLQRTTRKLSVTAEGRRYYEECKRVLADIAAME
SSFPGRAAQPKGRFKVGMPQSLARHCIIPTLPAFLRQYPELELILCSSDSVEDIILQGYDCVIRAGRIDDSTTLVARPLA
SFNWVIAASPTYIERYGSPENLDDLQKHHAVGYLNHRTGRTIDWFFTREGKDYAIRVQETLVVDDTDAYIQAGIQGLGLI
RVASYLVAPYLHSGALVTCMDNHSYDLPLALVYPQNRFLPPAVRAFYDWCKTALSQPAPLR
>Mature_301_residues
MDKLEAMQVYVCVVDTHSFIRAAEVLGVPRSTVSRVVKELESWLKIQLLQRTTRKLSVTAEGRRYYEECKRVLADIAAME
SSFPGRAAQPKGRFKVGMPQSLARHCIIPTLPAFLRQYPELELILCSSDSVEDIILQGYDCVIRAGRIDDSTTLVARPLA
SFNWVIAASPTYIERYGSPENLDDLQKHHAVGYLNHRTGRTIDWFFTREGKDYAIRVQETLVVDDTDAYIQAGIQGLGLI
RVASYLVAPYLHSGALVTCMDNHSYDLPLALVYPQNRFLPPAVRAFYDWCKTALSQPAPLR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=297, Percent_Identity=34.6801346801347, Blast_Score=190, Evalue=9e-50,
Organism=Escherichia coli, GI1786401, Length=288, Percent_Identity=35.4166666666667, Blast_Score=168, Evalue=3e-43,
Organism=Escherichia coli, GI1787128, Length=286, Percent_Identity=29.7202797202797, Blast_Score=141, Evalue=4e-35,
Organism=Escherichia coli, GI1787589, Length=291, Percent_Identity=26.1168384879725, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1789639, Length=289, Percent_Identity=28.0276816608997, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI87081978, Length=266, Percent_Identity=29.3233082706767, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1789440, Length=297, Percent_Identity=24.5791245791246, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI1789173, Length=260, Percent_Identity=27.6923076923077, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1786448, Length=298, Percent_Identity=24.1610738255034, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1788748, Length=152, Percent_Identity=30.2631578947368, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1788481, Length=303, Percent_Identity=22.7722772277228, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33940; Mature: 33940

Theoretical pI: Translated: 7.79; Mature: 7.79

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKLEAMQVYVCVVDTHSFIRAAEVLGVPRSTVSRVVKELESWLKIQLLQRTTRKLSVTA
CCCHHEEEEEEEEECCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEE
EGRRYYEECKRVLADIAAMESSFPGRAAQPKGRFKVGMPQSLARHCIIPTLPAFLRQYPE
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCHHHHHHCCCCCHHHHHHHCCC
LELILCSSDSVEDIILQGYDCVIRAGRIDDSTTLVARPLASFNWVIAASPTYIERYGSPE
EEEEEECCCCHHHHHHCCCHHEEEECCCCCCHHHHHHHHCCCCEEEEECCHHHHHCCCCC
NLDDLQKHHAVGYLNHRTGRTIDWFFTREGKDYAIRVQETLVVDDTDAYIQAGIQGLGLI
CHHHHHHHHHCEEEECCCCCEEEEEEEECCCCEEEEEEEEEEECCCHHHHHHHHHHHHHH
RVASYLVAPYLHSGALVTCMDNHSYDLPLALVYPQNRFLPPAVRAFYDWCKTALSQPAPL
HHHHHHHHHHHCCCCEEEEECCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCC
R
C
>Mature Secondary Structure
MDKLEAMQVYVCVVDTHSFIRAAEVLGVPRSTVSRVVKELESWLKIQLLQRTTRKLSVTA
CCCHHEEEEEEEEECCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEE
EGRRYYEECKRVLADIAAMESSFPGRAAQPKGRFKVGMPQSLARHCIIPTLPAFLRQYPE
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCHHHHHHCCCCCHHHHHHHCCC
LELILCSSDSVEDIILQGYDCVIRAGRIDDSTTLVARPLASFNWVIAASPTYIERYGSPE
EEEEEECCCCHHHHHHCCCHHEEEECCCCCCHHHHHHHHCCCCEEEEECCHHHHHCCCCC
NLDDLQKHHAVGYLNHRTGRTIDWFFTREGKDYAIRVQETLVVDDTDAYIQAGIQGLGLI
CHHHHHHHHHCEEEECCCCCEEEEEEEECCCCEEEEEEEEEEECCCHHHHHHHHHHHHHH
RVASYLVAPYLHSGALVTCMDNHSYDLPLALVYPQNRFLPPAVRAFYDWCKTALSQPAPL
HHHHHHHHHHHCCCCEEEEECCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCC
R
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]