| Definition | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 chromosome, complete genome. |
|---|---|
| Accession | NC_003197 |
| Length | 4,857,432 |
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The map label for this gene is ydbH [H]
Identifier: 16764990
GI number: 16764990
Start: 1737153
End: 1739789
Strand: Reverse
Name: ydbH [H]
Synonym: STM1646
Alternate gene names: 16764990
Gene position: 1739789-1737153 (Counterclockwise)
Preceding gene: 16764993
Following gene: 16764989
Centisome position: 35.82
GC content: 55.4
Gene sequence:
>2637_bases ATGAAGGGTAAATATAAAGCCGCCCTTGCGCTACTGTTACTGCTGATTCTTATCCCTCTGACGCTACTGATGACCCTCGG GCTGTGGGTTCCCACTCTGGCGGGAATTTGGCTACCCGTCGGTACCCGTATCGCTCTGGAACAAAGTCCACGCCTGACAC GTCATGGGTTAGTGATTCCCGATCTTCGCTATCTGGTCAATGATTGTTCGTTAGCGCATATTACCCAGGCGGAACTGACG CATCCCAGCCGTTGGTTGCTGAATATTAAAAGCCTTAAACTGGATGCCGCGTGCCTGGCGAAACTGCCCGCTACGGAAGC TTCTCCCGCCGCGCCGCGTACGCTGGCGCAGTGGCAGTCAATGCTGCCCAATACCTGGATTAACATCGATAATGTCATTC TCGCGCCCTGGCCGGAATGGCAGGGCAAGCTGGCGATCTCCATGACGCCGGTCATTCAGCAGATACGTTATCAGGGCGAA AAAGTAAAATTTCAAGGGCAGCTACGCGGTCAGGCATTGACGGTGAGCCAACTGGAGATCGCCGCGCTGGCCAACCAGCC TCCCGTTAGCCTGGCGGGGGAATTTGTGTTGCCGCTGGTACCGGATGGCCTGCCGGTCAGCGGTCATGCGGCAGCGACCT TGCGTCTGCCGCAGGAACCGTCGCTGGTGGATGCGGAACTGGAGTGGCGTGATAACGCCGGACAGCTCATCGTGATGGCG CGAGGTAATCCTGACCCGATTCTCGATCTCCCCTGGGCGGTAACGCGTCAGCGGCTTACCATCAGCGATGGCCGCTGGAA CTGGCCATATCAGGGATTCCCCTTGAGCGGACGTCTGGCTTTTAATATCGATAACTGGCAAGCCGGGCCGGATAATGCGC AAGTCAGTGGACGCCTGAATATTCTGACCCAGGGCGATGCCGGTAAAGCGAACGCTGTACTGACTATCGGCCCGGGAAAA CTCAGCATGGATAGCAGTGAGATGCCTCTACAGCTTACCGGCGAGGCTAAACAGAAGGATTTAATCTTTTATGCCGTATT GCCCGCTATGTTCCGCGGCAGTCTGGCCGATCCGCAGCTCACCTTTGCACCTGGCGCATTGCTACGCTCGCGCGGGCGGG TGATTGATGCGTTAGATATTGATGAAATTCGTTGGCCGCTGGCGGGCGTTAAGGTGACGCCGCGCGGCGTTGATGGCCGA TTACAGGCTATTTTACGGGCGCACGAAAATGAGATGGGCGATTTCGTTCTTCATCTTGATGGCCTGGCCAATGATTTTCT CCCTGATGCTGGTCGCTGGCGGTGGCGCTATTGGGGGCAAGGAAGCTTTACGCCAATGCGCGCCCACTGGGATATTGCCG GACAGGGCGAATGGCATGATAACACCATCAGGTTGACCAGTTTGTCCACCGGTTTTGATCAGTTGCACTATGGCGCAATG ACCGTCACATCGCCAAGACTGGCGCTGAATAAACCTATTGTCTGGGTTCGCGACGCCACAACGCCGTCGCTACAGGGCGC GCTGTCTCTGGTGGCGGGGAAAACCGTATTTACCAGTGGGAGCGTGCTGCCGCCTTCTACCCTTAATTTTAGCGTTGAAG GGCGAGAGCCAACCCTGTTCCAGTTTAAAGGCGACCTTCGGGCGGGGGCGATAGGGCCGGTACGGCTGAATGGGCGCTGG GATGGCGAACGCCTTCGTGGACAGGCCTGGTGGCCGAAGCAGTCGCTTATCGTTTTCCAGCCGTTGCTTCCACCGGACTG GAAAATGACGCTGCGCGAAGGCTCACTGTATGCGCAGGTGGCTTTTTCCGCTGCGCAGGGGCAGGGATTTGAAGCAGGTG GACACGGCGTGTTAAAAGGCGGCAGCGCCTGGATGCCTGATAACAAAATCAACGGCGTCGATTTCATTCTGCCATTTCGC TTCCACAACGGCGCGTGGCAATTGGGGACGCGCGGGCCCATCTCGCTGCGTATCGCCGGGATAGTTAACCAGGTCACGGC GAAAAATATCACCGCTGATTTACAGGGCGGTTATCCCTGGAGCGAGTCGAATCCATTACTGCTAAGCGATGTCAGCGTAG ACGTGCTGGGCGGTCAAATCATTATGAAACAGTTGCGAATGCCGCAGCACGACCCGGCGCTTTTGCGGGTGCAAAATATT TCATCCAGCGAATTGATTAGCGCCATAAATCCAAAGCAATTCGCCATGTCTGGTCCGGTCAGCGGCGCGCTGCCGCTGTG GCTGAACAATGAAAAATGGATAATCAAAGATGGCTGGCTTACGAATCCTGGGCCAATGACGTTGCGTATCGATAAAGATA CTGCGGATGCGGTGGTGAAGGATAATGTCACGGCAGGCTCGGCGATCAACTGGCTACGTTATATGGAGATTACGCATTCG TGGACGAAAATTAACGTTGATAACCTGGGCGTACTAACGATGCAGGCGGCTATTACCGGCAAAAGCCGGGTAGATGGTAA AACCGCGATCGTTAACTTGAACTATACCCATGAAGAAAATGTGTTTACGCTGTGGCGCAGTTTGCGTTTTGGCGACAATT TACAGGCATGGCTTGAACAAAATACAGCGTTGCCGCAACCTCCTTGCCGGAAAGACAAGGACTGTGAGGATAAATAA
Upstream 100 bases:
>100_bases CGCCCCTGCAACATGAACTATTAGGCTATGTACGGGCAATCATGCCAAAATAAAGAGATAGCCGACTGAATTTTTCGTTA AATCAGGAAATTAATGGCCC
Downstream 100 bases:
>100_bases TGAAAATGAGTATTGCCATGCTGTCAGCGCTTGCGTCATTTATCGTGGTGGGGTGCACGCCACGTATTGAAGTCGCCGCG CCGGAACAGCCGATTACCAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 878; Mature: 878
Protein sequence:
>878_residues MKGKYKAALALLLLLILIPLTLLMTLGLWVPTLAGIWLPVGTRIALEQSPRLTRHGLVIPDLRYLVNDCSLAHITQAELT HPSRWLLNIKSLKLDAACLAKLPATEASPAAPRTLAQWQSMLPNTWINIDNVILAPWPEWQGKLAISMTPVIQQIRYQGE KVKFQGQLRGQALTVSQLEIAALANQPPVSLAGEFVLPLVPDGLPVSGHAAATLRLPQEPSLVDAELEWRDNAGQLIVMA RGNPDPILDLPWAVTRQRLTISDGRWNWPYQGFPLSGRLAFNIDNWQAGPDNAQVSGRLNILTQGDAGKANAVLTIGPGK LSMDSSEMPLQLTGEAKQKDLIFYAVLPAMFRGSLADPQLTFAPGALLRSRGRVIDALDIDEIRWPLAGVKVTPRGVDGR LQAILRAHENEMGDFVLHLDGLANDFLPDAGRWRWRYWGQGSFTPMRAHWDIAGQGEWHDNTIRLTSLSTGFDQLHYGAM TVTSPRLALNKPIVWVRDATTPSLQGALSLVAGKTVFTSGSVLPPSTLNFSVEGREPTLFQFKGDLRAGAIGPVRLNGRW DGERLRGQAWWPKQSLIVFQPLLPPDWKMTLREGSLYAQVAFSAAQGQGFEAGGHGVLKGGSAWMPDNKINGVDFILPFR FHNGAWQLGTRGPISLRIAGIVNQVTAKNITADLQGGYPWSESNPLLLSDVSVDVLGGQIIMKQLRMPQHDPALLRVQNI SSSELISAINPKQFAMSGPVSGALPLWLNNEKWIIKDGWLTNPGPMTLRIDKDTADAVVKDNVTAGSAINWLRYMEITHS WTKINVDNLGVLTMQAAITGKSRVDGKTAIVNLNYTHEENVFTLWRSLRFGDNLQAWLEQNTALPQPPCRKDKDCEDK
Sequences:
>Translated_878_residues MKGKYKAALALLLLLILIPLTLLMTLGLWVPTLAGIWLPVGTRIALEQSPRLTRHGLVIPDLRYLVNDCSLAHITQAELT HPSRWLLNIKSLKLDAACLAKLPATEASPAAPRTLAQWQSMLPNTWINIDNVILAPWPEWQGKLAISMTPVIQQIRYQGE KVKFQGQLRGQALTVSQLEIAALANQPPVSLAGEFVLPLVPDGLPVSGHAAATLRLPQEPSLVDAELEWRDNAGQLIVMA RGNPDPILDLPWAVTRQRLTISDGRWNWPYQGFPLSGRLAFNIDNWQAGPDNAQVSGRLNILTQGDAGKANAVLTIGPGK LSMDSSEMPLQLTGEAKQKDLIFYAVLPAMFRGSLADPQLTFAPGALLRSRGRVIDALDIDEIRWPLAGVKVTPRGVDGR LQAILRAHENEMGDFVLHLDGLANDFLPDAGRWRWRYWGQGSFTPMRAHWDIAGQGEWHDNTIRLTSLSTGFDQLHYGAM TVTSPRLALNKPIVWVRDATTPSLQGALSLVAGKTVFTSGSVLPPSTLNFSVEGREPTLFQFKGDLRAGAIGPVRLNGRW DGERLRGQAWWPKQSLIVFQPLLPPDWKMTLREGSLYAQVAFSAAQGQGFEAGGHGVLKGGSAWMPDNKINGVDFILPFR FHNGAWQLGTRGPISLRIAGIVNQVTAKNITADLQGGYPWSESNPLLLSDVSVDVLGGQIIMKQLRMPQHDPALLRVQNI SSSELISAINPKQFAMSGPVSGALPLWLNNEKWIIKDGWLTNPGPMTLRIDKDTADAVVKDNVTAGSAINWLRYMEITHS WTKINVDNLGVLTMQAAITGKSRVDGKTAIVNLNYTHEENVFTLWRSLRFGDNLQAWLEQNTALPQPPCRKDKDCEDK >Mature_878_residues MKGKYKAALALLLLLILIPLTLLMTLGLWVPTLAGIWLPVGTRIALEQSPRLTRHGLVIPDLRYLVNDCSLAHITQAELT HPSRWLLNIKSLKLDAACLAKLPATEASPAAPRTLAQWQSMLPNTWINIDNVILAPWPEWQGKLAISMTPVIQQIRYQGE KVKFQGQLRGQALTVSQLEIAALANQPPVSLAGEFVLPLVPDGLPVSGHAAATLRLPQEPSLVDAELEWRDNAGQLIVMA RGNPDPILDLPWAVTRQRLTISDGRWNWPYQGFPLSGRLAFNIDNWQAGPDNAQVSGRLNILTQGDAGKANAVLTIGPGK LSMDSSEMPLQLTGEAKQKDLIFYAVLPAMFRGSLADPQLTFAPGALLRSRGRVIDALDIDEIRWPLAGVKVTPRGVDGR LQAILRAHENEMGDFVLHLDGLANDFLPDAGRWRWRYWGQGSFTPMRAHWDIAGQGEWHDNTIRLTSLSTGFDQLHYGAM TVTSPRLALNKPIVWVRDATTPSLQGALSLVAGKTVFTSGSVLPPSTLNFSVEGREPTLFQFKGDLRAGAIGPVRLNGRW DGERLRGQAWWPKQSLIVFQPLLPPDWKMTLREGSLYAQVAFSAAQGQGFEAGGHGVLKGGSAWMPDNKINGVDFILPFR FHNGAWQLGTRGPISLRIAGIVNQVTAKNITADLQGGYPWSESNPLLLSDVSVDVLGGQIIMKQLRMPQHDPALLRVQNI SSSELISAINPKQFAMSGPVSGALPLWLNNEKWIIKDGWLTNPGPMTLRIDKDTADAVVKDNVTAGSAINWLRYMEITHS WTKINVDNLGVLTMQAAITGKSRVDGKTAIVNLNYTHEENVFTLWRSLRFGDNLQAWLEQNTALPQPPCRKDKDCEDK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1787646, Length=878, Percent_Identity=78.246013667426, Blast_Score=1410, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR021730 [H]
Pfam domain/function: PF11739 DctA-YdbH [H]
EC number: NA
Molecular weight: Translated: 96619; Mature: 96619
Theoretical pI: Translated: 9.17; Mature: 9.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKGKYKAALALLLLLILIPLTLLMTLGLWVPTLAGIWLPVGTRIALEQSPRLTRHGLVIP CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHCCEECC DLRYLVNDCSLAHITQAELTHPSRWLLNIKSLKLDAACLAKLPATEASPAAPRTLAQWQS CHHHHHCCCCEEEEEHHHCCCCCCEEEEEEHEEECHHHHHCCCCCCCCCCCCHHHHHHHH MLPNTWINIDNVILAPWPEWQGKLAISMTPVIQQIRYQGEKVKFQGQLRGQALTVSQLEI HCCCCEECCCCEEEECCCCCCCEEEEEEHHHHHHHHCCCCEEEEEEEECCCEEEEEEEEE AALANQPPVSLAGEFVLPLVPDGLPVSGHAAATLRLPQEPSLVDAELEWRDNAGQLIVMA EECCCCCCCCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCEEEEEEEECCCCCCEEEEE RGNPDPILDLPWAVTRQRLTISDGRWNWPYQGFPLSGRLAFNIDNWQAGPDNAQVSGRLN CCCCCCEEECCHHHCCCEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEE ILTQGDAGKANAVLTIGPGKLSMDSSEMPLQLTGEAKQKDLIFYAVLPAMFRGSLADPQL EEECCCCCCCCEEEEECCCCCCCCCCCCCEEEECCCCCCCEEEEEEHHHHHCCCCCCCCE TFAPGALLRSRGRVIDALDIDEIRWPLAGVKVTPRGVDGRLQAILRAHENEMGDFVLHLD EECCCHHHHCCCCEEEEECHHHHCCCCCCEEECCCCCCHHHHHHHHHHCCCCCCEEEEEC GLANDFLPDAGRWRWRYWGQGSFTPMRAHWDIAGQGEWHDNTIRLTSLSTGFDQLHYGAM CCCHHCCCCCCCEEEEEECCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCHHHHCCCEE TVTSPRLALNKPIVWVRDATTPSLQGALSLVAGKTVFTSGSVLPPSTLNFSVEGREPTLF EECCCCEECCCCEEEEECCCCCCHHHHHHHHCCCEEEECCCCCCCCCEEEEECCCCCEEE QFKGDLRAGAIGPVRLNGRWDGERLRGQAWWPKQSLIVFQPLLPPDWKMTLREGSLYAQV EEECCCCCCCCCEEEECCCCCHHHHCCCCCCCCCCEEEEECCCCCCCEEEEECCCEEEEE AFSAAQGQGFEAGGHGVLKGGSAWMPDNKINGVDFILPFRFHNGAWQLGTRGPISLRIAG EEEHHCCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEEEEECCCEEECCCCCCEEEEEEE IVNQVTAKNITADLQGGYPWSESNPLLLSDVSVDVLGGQIIMKQLRMPQHDPALLRVQNI HHHHHHHCCEEEECCCCCCCCCCCCEEEEECEEEECCHHHHHHHHCCCCCCCCEEEEECC SSSELISAINPKQFAMSGPVSGALPLWLNNEKWIIKDGWLTNPGPMTLRIDKDTADAVVK CHHHHHHHCCCCCEEECCCCCCCEEEEECCCEEEEECCEECCCCCEEEEECCCCCCCEEE DNVTAGSAINWLRYMEITHSWTKINVDNLGVLTMQAAITGKSRVDGKTAIVNLNYTHEEN CCCCCCCHHHHHHEEEEECCEEEEECCCCEEEEEEEEECCCCCCCCCEEEEEEECCCCCC VFTLWRSLRFGDNLQAWLEQNTALPQPPCRKDKDCEDK HHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MKGKYKAALALLLLLILIPLTLLMTLGLWVPTLAGIWLPVGTRIALEQSPRLTRHGLVIP CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHCCEECC DLRYLVNDCSLAHITQAELTHPSRWLLNIKSLKLDAACLAKLPATEASPAAPRTLAQWQS CHHHHHCCCCEEEEEHHHCCCCCCEEEEEEHEEECHHHHHCCCCCCCCCCCCHHHHHHHH MLPNTWINIDNVILAPWPEWQGKLAISMTPVIQQIRYQGEKVKFQGQLRGQALTVSQLEI HCCCCEECCCCEEEECCCCCCCEEEEEEHHHHHHHHCCCCEEEEEEEECCCEEEEEEEEE AALANQPPVSLAGEFVLPLVPDGLPVSGHAAATLRLPQEPSLVDAELEWRDNAGQLIVMA EECCCCCCCCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCEEEEEEEECCCCCCEEEEE RGNPDPILDLPWAVTRQRLTISDGRWNWPYQGFPLSGRLAFNIDNWQAGPDNAQVSGRLN CCCCCCEEECCHHHCCCEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEE ILTQGDAGKANAVLTIGPGKLSMDSSEMPLQLTGEAKQKDLIFYAVLPAMFRGSLADPQL EEECCCCCCCCEEEEECCCCCCCCCCCCCEEEECCCCCCCEEEEEEHHHHHCCCCCCCCE TFAPGALLRSRGRVIDALDIDEIRWPLAGVKVTPRGVDGRLQAILRAHENEMGDFVLHLD EECCCHHHHCCCCEEEEECHHHHCCCCCCEEECCCCCCHHHHHHHHHHCCCCCCEEEEEC GLANDFLPDAGRWRWRYWGQGSFTPMRAHWDIAGQGEWHDNTIRLTSLSTGFDQLHYGAM CCCHHCCCCCCCEEEEEECCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCHHHHCCCEE TVTSPRLALNKPIVWVRDATTPSLQGALSLVAGKTVFTSGSVLPPSTLNFSVEGREPTLF EECCCCEECCCCEEEEECCCCCCHHHHHHHHCCCEEEECCCCCCCCCEEEEECCCCCEEE QFKGDLRAGAIGPVRLNGRWDGERLRGQAWWPKQSLIVFQPLLPPDWKMTLREGSLYAQV EEECCCCCCCCCEEEECCCCCHHHHCCCCCCCCCCEEEEECCCCCCCEEEEECCCEEEEE AFSAAQGQGFEAGGHGVLKGGSAWMPDNKINGVDFILPFRFHNGAWQLGTRGPISLRIAG EEEHHCCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEEEEECCCEEECCCCCCEEEEEEE IVNQVTAKNITADLQGGYPWSESNPLLLSDVSVDVLGGQIIMKQLRMPQHDPALLRVQNI HHHHHHHCCEEEECCCCCCCCCCCCEEEEECEEEECCHHHHHHHHCCCCCCCCEEEEECC SSSELISAINPKQFAMSGPVSGALPLWLNNEKWIIKDGWLTNPGPMTLRIDKDTADAVVK CHHHHHHHCCCCCEEECCCCCCCEEEEECCCEEEEECCEECCCCCEEEEECCCCCCCEEE DNVTAGSAINWLRYMEITHSWTKINVDNLGVLTMQAAITGKSRVDGKTAIVNLNYTHEEN CCCCCCCHHHHHHEEEEECCEEEEECCCCEEEEEEEEECCCCCCCCCEEEEEEECCCCCC VFTLWRSLRFGDNLQAWLEQNTALPQPPCRKDKDCEDK HHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9097039; 9278503; 9025293 [H]