Click here to switch to the map view.

The map label for this gene is yecS [H]

Identifier: 16764980

GI number: 16764980

Start: 1726059

End: 1726739

Strand: Direct

Name: yecS [H]

Synonym: STM1636

Alternate gene names: 16764980

Gene position: 1726059-1726739 (Clockwise)

Preceding gene: 16764979

Following gene: 16764981

Centisome position: 35.53

GC content: 43.47

Gene sequence:

>681_bases
ATGATCGCTGGCTGGTCTCTCTTCTTTAATGACCTGACTGAACAACTGCCACTTGTTGTGGACGGTATTAAAGAAACCTG
TAAACTTGCGCTGATTGTTTCCATCACCGGTTTTTTGTGGGGAATTATTATTTTCTTTCTGAGCCTGAGCCATCGCCCCG
TGGTAAAAGCCATAACTCGACTGTACATGGATTTCTTTATCGGTACGCCACTCATTCTTATTCTATTTGTTATCTATTAT
GGTTTACCTCAATCTGGCATTCACCTGTCCTCTTTTACCGTGGCGGTTACAGGTTTTACCTTGAATGTCGGCGCATATAA
TGCCGCGTACATGACAACGGCCTATAACGCATTGAATAAGTATGAAACGGAGGCAGCAGTCGTTCAGGGGTTGAACAAAC
GGCAGGTCTTTTTGTGGATTATACTGCCTCAGGTATTGCTGTCTTCCATTCCAGCCTTAACGAATCAGGTGATTAATAAC
CTTAAAGACAGCACCATCGTTTTTCTTATCCAATATACTGAGTTTTTCGCGCGAATTCAGGAGGTTGCTGCAACCAGCTT
TAAATTCTTCCATGCTTACCTTTTTGCCGCCATAGTGTATCTTATTGGCGTTACCTTTATCGTCGGTTTGACCCGGTTTT
TAGAGCATAGACTGCTTCGCCATTACGGTCAGGGTTACTGA

Upstream 100 bases:

>100_bases
TTCTTAATCATGGCAAAATTCGTGCAGAAGGCGCTTTTACCGATCTTGCCTTACGAGAAACGGATCCAGATATCCACTGT
TTTTTTAGCGAGGCACAACG

Downstream 100 bases:

>100_bases
GTTGTACTGCACTATTCTGATTAATTCACCACTGACATTATCAAAGTTATTTTTATTTAGCGTTGATTAAGATTTTAACC
TTCATTATTGCGTTAGATGT

Product: ABC-type transport system membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 226

Protein sequence:

>226_residues
MIAGWSLFFNDLTEQLPLVVDGIKETCKLALIVSITGFLWGIIIFFLSLSHRPVVKAITRLYMDFFIGTPLILILFVIYY
GLPQSGIHLSSFTVAVTGFTLNVGAYNAAYMTTAYNALNKYETEAAVVQGLNKRQVFLWIILPQVLLSSIPALTNQVINN
LKDSTIVFLIQYTEFFARIQEVAATSFKFFHAYLFAAIVYLIGVTFIVGLTRFLEHRLLRHYGQGY

Sequences:

>Translated_226_residues
MIAGWSLFFNDLTEQLPLVVDGIKETCKLALIVSITGFLWGIIIFFLSLSHRPVVKAITRLYMDFFIGTPLILILFVIYY
GLPQSGIHLSSFTVAVTGFTLNVGAYNAAYMTTAYNALNKYETEAAVVQGLNKRQVFLWIILPQVLLSSIPALTNQVINN
LKDSTIVFLIQYTEFFARIQEVAATSFKFFHAYLFAAIVYLIGVTFIVGLTRFLEHRLLRHYGQGY
>Mature_226_residues
MIAGWSLFFNDLTEQLPLVVDGIKETCKLALIVSITGFLWGIIIFFLSLSHRPVVKAITRLYMDFFIGTPLILILFVIYY
GLPQSGIHLSSFTVAVTGFTLNVGAYNAAYMTTAYNALNKYETEAAVVQGLNKRQVFLWIILPQVLLSSIPALTNQVINN
LKDSTIVFLIQYTEFFARIQEVAATSFKFFHAYLFAAIVYLIGVTFIVGLTRFLEHRLLRHYGQGY

Specific function: Probably part of the binding-protein-dependent transport system yecCS for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=208, Percent_Identity=34.6153846153846, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI1787030, Length=209, Percent_Identity=27.7511961722488, Blast_Score=85, Evalue=3e-18,
Organism=Escherichia coli, GI87082239, Length=192, Percent_Identity=30.7291666666667, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1786873, Length=220, Percent_Identity=24.5454545454545, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788645, Length=194, Percent_Identity=27.8350515463918, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 25527; Mature: 25527

Theoretical pI: Translated: 9.16; Mature: 9.16

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIAGWSLFFNDLTEQLPLVVDGIKETCKLALIVSITGFLWGIIIFFLSLSHRPVVKAITR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
LYMDFFIGTPLILILFVIYYGLPQSGIHLSSFTVAVTGFTLNVGAYNAAYMTTAYNALNK
HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHEEEEEEEEEECCCCHHHHHHHHHHHHHH
YETEAAVVQGLNKRQVFLWIILPQVLLSSIPALTNQVINNLKDSTIVFLIQYTEFFARIQ
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
EVAATSFKFFHAYLFAAIVYLIGVTFIVGLTRFLEHRLLRHYGQGY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MIAGWSLFFNDLTEQLPLVVDGIKETCKLALIVSITGFLWGIIIFFLSLSHRPVVKAITR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
LYMDFFIGTPLILILFVIYYGLPQSGIHLSSFTVAVTGFTLNVGAYNAAYMTTAYNALNK
HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHEEEEEEEEEECCCCHHHHHHHHHHHHHH
YETEAAVVQGLNKRQVFLWIILPQVLLSSIPALTNQVINNLKDSTIVFLIQYTEFFARIQ
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
EVAATSFKFFHAYLFAAIVYLIGVTFIVGLTRFLEHRLLRHYGQGY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]