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The map label for this gene is yecS [H]

Identifier: 16764978

GI number: 16764978

Start: 1724659

End: 1725306

Strand: Direct

Name: yecS [H]

Synonym: STM1634

Alternate gene names: 16764978

Gene position: 1724659-1725306 (Clockwise)

Preceding gene: 16764977

Following gene: 16764979

Centisome position: 35.51

GC content: 41.98

Gene sequence:

>648_bases
ATGTCATCAGGTAATATGCTGGCTATCTTTTATTTCCTATTGGAAGGGATTGGTAATACGCTGCTTGTAACATTTACCTG
TTTTCTCTCAGCGTTTTTGACCGGGCTTACAGTCGCCGTATTACGGCGACTATCCCCTCTTCCACTACAGAAGATACTCG
ACGTACTGGTCTTTATTCTTCGGGGAATTCCAATACTTATTGCTGTTTTTCTTGTTTATTTTGGATTGCCATCGATTGGC
ATATATGTTTCACCACTGGTGGCCATGAACCTCAGCGTCGGCTTAATCAGCGGGAGTTATCTTGCCGAGGTGTTCAGAGG
GGCGCTTAAATTAGTTGAGCCATTCGAAATAACGGTAGCGAAAGTGGCAGGAATGCGTCAATTACAGGTTATAATAAATA
TTGAACTGCCACAGATGTTGCGATTTTCTGTGCCCGGTATTATCAATGAGTTTTCTTCTGTATTAAAAGCGACGCCCTTT
GCTTATACTGTAGGCATCGCTGAAATAACGAAGCAGGCAATGTCACTGACAGCCATCACGCTGAACGGGTTACAGATTTA
TACTCTTGCCGGGGTATTATATTTCATTATTTATAAAGTATTTACTCTTCTGGCCGGAGTGTTTGAGAAAAAATATCGCA
TCAGTTGA

Upstream 100 bases:

>100_bases
GAAAGGCTCTCCCGTGCGCGATGATTTCAACTTATGGCTTAAAGAGCAAGGGCCACAAAAAATATCTGGCATTGTCGATA
GCTGGATGAAATAGTAAGCT

Downstream 100 bases:

>100_bases
ACCATAAAAATAGAGGTGATACTCATGGCTTTACTGAAACTAAAAGAGATAAGTAAGGAATATTCAGGAAAAAAGGTTCT
TGATACGGTTAGTCTGAAAA

Product: ABC transporter permease component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 215; Mature: 214

Protein sequence:

>215_residues
MSSGNMLAIFYFLLEGIGNTLLVTFTCFLSAFLTGLTVAVLRRLSPLPLQKILDVLVFILRGIPILIAVFLVYFGLPSIG
IYVSPLVAMNLSVGLISGSYLAEVFRGALKLVEPFEITVAKVAGMRQLQVIINIELPQMLRFSVPGIINEFSSVLKATPF
AYTVGIAEITKQAMSLTAITLNGLQIYTLAGVLYFIIYKVFTLLAGVFEKKYRIS

Sequences:

>Translated_215_residues
MSSGNMLAIFYFLLEGIGNTLLVTFTCFLSAFLTGLTVAVLRRLSPLPLQKILDVLVFILRGIPILIAVFLVYFGLPSIG
IYVSPLVAMNLSVGLISGSYLAEVFRGALKLVEPFEITVAKVAGMRQLQVIINIELPQMLRFSVPGIINEFSSVLKATPF
AYTVGIAEITKQAMSLTAITLNGLQIYTLAGVLYFIIYKVFTLLAGVFEKKYRIS
>Mature_214_residues
SSGNMLAIFYFLLEGIGNTLLVTFTCFLSAFLTGLTVAVLRRLSPLPLQKILDVLVFILRGIPILIAVFLVYFGLPSIGI
YVSPLVAMNLSVGLISGSYLAEVFRGALKLVEPFEITVAKVAGMRQLQVIINIELPQMLRFSVPGIINEFSSVLKATPFA
YTVGIAEITKQAMSLTAITLNGLQIYTLAGVLYFIIYKVFTLLAGVFEKKYRIS

Specific function: Probably part of the binding-protein-dependent transport system yecCS for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=201, Percent_Identity=31.3432835820896, Blast_Score=105, Evalue=2e-24,
Organism=Escherichia coli, GI1787030, Length=204, Percent_Identity=25.9803921568627, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1788646, Length=185, Percent_Identity=28.1081081081081, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1788645, Length=165, Percent_Identity=28.4848484848485, Blast_Score=64, Evalue=5e-12,
Organism=Escherichia coli, GI1787087, Length=204, Percent_Identity=23.5294117647059, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 23555; Mature: 23424

Theoretical pI: Translated: 9.85; Mature: 9.85

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSGNMLAIFYFLLEGIGNTLLVTFTCFLSAFLTGLTVAVLRRLSPLPLQKILDVLVFIL
CCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
RGIPILIAVFLVYFGLPSIGIYVSPLVAMNLSVGLISGSYLAEVFRGALKLVEPFEITVA
CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
KVAGMRQLQVIINIELPQMLRFSVPGIINEFSSVLKATPFAYTVGIAEITKQAMSLTAIT
HHHCHHHHHEEEECCHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
LNGLQIYTLAGVLYFIIYKVFTLLAGVFEKKYRIS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SSGNMLAIFYFLLEGIGNTLLVTFTCFLSAFLTGLTVAVLRRLSPLPLQKILDVLVFIL
CCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
RGIPILIAVFLVYFGLPSIGIYVSPLVAMNLSVGLISGSYLAEVFRGALKLVEPFEITVA
CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
KVAGMRQLQVIINIELPQMLRFSVPGIINEFSSVLKATPFAYTVGIAEITKQAMSLTAIT
HHHCHHHHHEEEECCHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
LNGLQIYTLAGVLYFIIYKVFTLLAGVFEKKYRIS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]