Click here to switch to the map view.

The map label for this gene is ydcJ [H]

Identifier: 16764968

GI number: 16764968

Start: 1713259

End: 1714602

Strand: Reverse

Name: ydcJ [H]

Synonym: STM1624

Alternate gene names: 16764968

Gene position: 1714602-1713259 (Counterclockwise)

Preceding gene: 16764970

Following gene: 16764967

Centisome position: 35.3

GC content: 54.39

Gene sequence:

>1344_bases
ATGGCGAACACCATCACGGCAGATGAGATTCGGGAACACTTTTCGCAGGCAATGTCGGCAATGTACCAGCAGGAAGTTCC
GCAGTACGGTACGTTACTGGAACTTGTGGCTGACGTGAATCTGGCGGTGCTGGAAAATAATCCCAAACTGCATGAGCAGT
TGGCTAATGCCGATGAACTGGCGCGATTGAACGTGGAACGACATGGCGCCATTCGTGTTGGCACCGCAGAAGAACTTTCT
ACCTTGCGTCGGATATTCGCCATCATGGGGATGTACCCAGTAAGTTATTACGATCTCTCTCAGGCGGGCGTGCCTGTGCA
CTCCACGGCATTTCGTCCCATTGACGAGGCTTCGCTCTCGCGTAATCCCTTTCGCATGTTCACTTCGCTATTACGCCTGG
AGCTCATTGAAAACGCGGCATTACGCCAGCGGGCGGCGGAAATCTTATCGCAGCGTGATATTTTTACATCGCGCTGCCGA
CAATTGCTGGATGAGTACGACGAGCAGGGCGGTTTTAGCGCTGCTCAGGCCGAAGAGTTCGTCCGTGAAACGCTGGAGAC
TTTTCGCTGGCATCGTCAGGCTACCGTTGATGAAGAAACGTACCGCAGCCTGCATCGTGAGCATCGTTTAATTGCCGACG
TGGTCTGTTTTCCGGGATGCCACATTAACCATCTGACGCCGCGTACTCTGGATATCGACCGGGTACAGGCCATGATGCCG
GAGTGCGGCATTACGCCTAAAATTCTTATCGAAGGTCCGCCTCGCCGCGAAGTGCCTATTCTGTTGCGGCAAACCAGTTT
CAAAGCTCTGGAAGAGCAGGTGCTCTTCGTTGATGAAAAGCAGGGTACGCACACGGCGCGCTTCGGCGAAATTGAGCAAC
GTGGCGTCGCGCTGACGCCAAAAGGTCGTCGATTATATGACGAACTGTTGCACAAGGCGGGAACGGGTAAGGATAACTTC
ACGCATCAACTCCATTTGCGGGAGGTCTTTAACGCCTTTCCGGATAGCGAATTTCTGCTTCGCCAGCAGGGGCTTGCCTG
GTTCCGCTATCGCTTAACGCCTTCCGGCGAGGCGCATCGTCAGGCGATCCATCCTGGCGACGATCCGCAGCCGCTTATTG
AGCGCGGTTGGGTAATCGCGCAGCCGATTACCTATGAAGATTTTCTTCCGGTCAGCGCAGCCGGCATTTTTCAGTCGAAT
TTGGGAGATGAAACGCTGGCCAGAAGCCACGGCAATGCCAGCCGCGACGCCTTTGAACAGGCGCTGGGATGTGCAGTACG
GGATGAATTTTCGTTATATCAGGAAGCGGAAGAACGCAGTAAACGCCGTTGCGGTCTGCTTTAA

Upstream 100 bases:

>100_bases
GCATAATGAATTCAGGTCGGATCACACTTTATAAATTCTTCTCCCCGGAATGGATGAGGTTTTCTACACTCCAGGTAACA
TTCACTGGAGGCATGACATT

Downstream 100 bases:

>100_bases
AAGCGGTAAGCTTCACAGGCTGTGAGGATACTGTAAAAGGAAGGCGTTATGTTGAATCCCTCCATCCCGTTGGTGGAGAC
GCGTCACGGTAAAATCGTGG

Product: cytoplasmic protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 447; Mature: 446

Protein sequence:

>447_residues
MANTITADEIREHFSQAMSAMYQQEVPQYGTLLELVADVNLAVLENNPKLHEQLANADELARLNVERHGAIRVGTAEELS
TLRRIFAIMGMYPVSYYDLSQAGVPVHSTAFRPIDEASLSRNPFRMFTSLLRLELIENAALRQRAAEILSQRDIFTSRCR
QLLDEYDEQGGFSAAQAEEFVRETLETFRWHRQATVDEETYRSLHREHRLIADVVCFPGCHINHLTPRTLDIDRVQAMMP
ECGITPKILIEGPPRREVPILLRQTSFKALEEQVLFVDEKQGTHTARFGEIEQRGVALTPKGRRLYDELLHKAGTGKDNF
THQLHLREVFNAFPDSEFLLRQQGLAWFRYRLTPSGEAHRQAIHPGDDPQPLIERGWVIAQPITYEDFLPVSAAGIFQSN
LGDETLARSHGNASRDAFEQALGCAVRDEFSLYQEAEERSKRRCGLL

Sequences:

>Translated_447_residues
MANTITADEIREHFSQAMSAMYQQEVPQYGTLLELVADVNLAVLENNPKLHEQLANADELARLNVERHGAIRVGTAEELS
TLRRIFAIMGMYPVSYYDLSQAGVPVHSTAFRPIDEASLSRNPFRMFTSLLRLELIENAALRQRAAEILSQRDIFTSRCR
QLLDEYDEQGGFSAAQAEEFVRETLETFRWHRQATVDEETYRSLHREHRLIADVVCFPGCHINHLTPRTLDIDRVQAMMP
ECGITPKILIEGPPRREVPILLRQTSFKALEEQVLFVDEKQGTHTARFGEIEQRGVALTPKGRRLYDELLHKAGTGKDNF
THQLHLREVFNAFPDSEFLLRQQGLAWFRYRLTPSGEAHRQAIHPGDDPQPLIERGWVIAQPITYEDFLPVSAAGIFQSN
LGDETLARSHGNASRDAFEQALGCAVRDEFSLYQEAEERSKRRCGLL
>Mature_446_residues
ANTITADEIREHFSQAMSAMYQQEVPQYGTLLELVADVNLAVLENNPKLHEQLANADELARLNVERHGAIRVGTAEELST
LRRIFAIMGMYPVSYYDLSQAGVPVHSTAFRPIDEASLSRNPFRMFTSLLRLELIENAALRQRAAEILSQRDIFTSRCRQ
LLDEYDEQGGFSAAQAEEFVRETLETFRWHRQATVDEETYRSLHREHRLIADVVCFPGCHINHLTPRTLDIDRVQAMMPE
CGITPKILIEGPPRREVPILLRQTSFKALEEQVLFVDEKQGTHTARFGEIEQRGVALTPKGRRLYDELLHKAGTGKDNFT
HQLHLREVFNAFPDSEFLLRQQGLAWFRYRLTPSGEAHRQAIHPGDDPQPLIERGWVIAQPITYEDFLPVSAAGIFQSNL
GDETLARSHGNASRDAFEQALGCAVRDEFSLYQEAEERSKRRCGLL

Specific function: Unknown

COG id: COG5383

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To M.tuberculosis Rv3292 [H]

Homologues:

Organism=Escherichia coli, GI1787692, Length=447, Percent_Identity=87.4720357941834, Blast_Score=827, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009770 [H]

Pfam domain/function: PF07063 DUF1338 [H]

EC number: NA

Molecular weight: Translated: 50965; Mature: 50834

Theoretical pI: Translated: 5.73; Mature: 5.73

Prosite motif: PS00237 G_PROTEIN_RECEP_F1_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANTITADEIREHFSQAMSAMYQQEVPQYGTLLELVADVNLAVLENNPKLHEQLANADEL
CCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEECCCCHHHHHHCCHHHH
ARLNVERHGAIRVGTAEELSTLRRIFAIMGMYPVSYYDLSQAGVPVHSTAFRPIDEASLS
HHHCHHHCCCEEECCHHHHHHHHHHHHHHHCCCCCCEEHHHCCCCCCCCCCCCCCHHHCC
RNPFRMFTSLLRLELIENAALRQRAAEILSQRDIFTSRCRQLLDEYDEQGGFSAAQAEEF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
VRETLETFRWHRQATVDEETYRSLHREHRLIADVVCFPGCHINHLTPRTLDIDRVQAMMP
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH
ECGITPKILIEGPPRREVPILLRQTSFKALEEQVLFVDEKQGTHTARFGEIEQRGVALTP
CCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHEEECCCCCCCHHCCCHHHCCEEECC
KGRRLYDELLHKAGTGKDNFTHQLHLREVFNAFPDSEFLLRQQGLAWFRYRLTPSGEAHR
CCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCEEEEEEECCCCHHHH
QAIHPGDDPQPLIERGWVIAQPITYEDFLPVSAAGIFQSNLGDETLARSHGNASRDAFEQ
HCCCCCCCCCHHHHCCCEEECCCCHHHCCCCHHHHHHHHCCCHHHHHHCCCCCHHHHHHH
ALGCAVRDEFSLYQEAEERSKRRCGLL
HHCCHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
ANTITADEIREHFSQAMSAMYQQEVPQYGTLLELVADVNLAVLENNPKLHEQLANADEL
CCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEECCCCHHHHHHCCHHHH
ARLNVERHGAIRVGTAEELSTLRRIFAIMGMYPVSYYDLSQAGVPVHSTAFRPIDEASLS
HHHCHHHCCCEEECCHHHHHHHHHHHHHHHCCCCCCEEHHHCCCCCCCCCCCCCCHHHCC
RNPFRMFTSLLRLELIENAALRQRAAEILSQRDIFTSRCRQLLDEYDEQGGFSAAQAEEF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
VRETLETFRWHRQATVDEETYRSLHREHRLIADVVCFPGCHINHLTPRTLDIDRVQAMMP
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH
ECGITPKILIEGPPRREVPILLRQTSFKALEEQVLFVDEKQGTHTARFGEIEQRGVALTP
CCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHEEECCCCCCCHHCCCHHHCCEEECC
KGRRLYDELLHKAGTGKDNFTHQLHLREVFNAFPDSEFLLRQQGLAWFRYRLTPSGEAHR
CCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCEEEEEEECCCCHHHH
QAIHPGDDPQPLIERGWVIAQPITYEDFLPVSAAGIFQSNLGDETLARSHGNASRDAFEQ
HCCCCCCCCCHHHHCCCEEECCCCHHHCCCCHHHHHHHHCCCHHHHHHCCCCCHHHHHHH
ALGCAVRDEFSLYQEAEERSKRRCGLL
HHCCHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]